Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34174 * 127.02564 * 2 1 4 4 O 1.34209 * 109.12748 * 180.26705 * 3 2 1 5 5 C 1.33656 * 110.90760 * 359.74480 * 4 3 2 6 6 C 1.50691 * 125.80176 * 179.97438 * 5 4 3 7 7 C 1.36415 * 108.39237 * 0.02562 * 5 4 3 8 8 C 1.47388 * 127.18656 * 179.97438 * 7 5 4 9 9 O 1.21610 * 119.99988 * 90.02706 * 8 7 5 10 10 N 1.34778 * 120.00007 * 270.02236 * 8 7 5 11 11 C 1.46498 * 119.99750 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.72769 * 31.59862 * 11 10 8 13 13 C 1.54342 * 110.82567 * 267.97367 * 11 10 8 14 14 C 1.51377 * 105.16903 * 268.12316 * 13 11 10 15 15 C 1.38504 * 130.38901 * 163.09338 * 14 13 11 16 16 C 1.38106 * 120.20820 * 180.15064 * 15 14 13 17 17 C 1.38245 * 119.93707 * 359.54342 * 16 15 14 18 18 C 1.38105 * 119.93686 * 0.22876 * 17 16 15 19 19 C 1.38215 * 109.75709 * 342.81172 * 14 13 11 20 20 C 1.51369 * 109.76229 * 359.97438 * 19 14 13 21 21 H 1.08999 * 110.30349 * 136.11272 * 20 19 14 22 22 N 1.46494 * 110.30358 * 258.16786 * 20 19 14 23 23 C 1.36937 * 120.00225 * 273.54767 * 22 20 19 24 24 H 1.07997 * 119.99996 * 359.97438 * 23 22 20 25 25 C 1.38814 * 120.00020 * 179.97438 * 23 22 20 26 26 N 1.31616 * 119.99843 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 119.99973 * 0.02562 * 25 23 22 28 28 H 1.48494 * 109.47282 * 89.99798 * 27 25 23 29 29 H 1.48506 * 109.46681 * 210.00012 * 27 25 23 30 30 H 1.48503 * 109.47031 * 329.99619 * 27 25 23 31 31 H 1.08998 * 109.47466 * 270.13526 * 1 2 3 32 32 H 1.09001 * 109.47456 * 30.13360 * 1 2 3 33 33 H 1.09001 * 109.47371 * 150.13525 * 1 2 3 34 34 H 1.08010 * 125.43591 * 0.02562 * 3 2 1 35 35 H 1.09003 * 109.47556 * 270.00615 * 6 5 4 36 36 H 1.09001 * 109.47285 * 30.00072 * 6 5 4 37 37 H 1.09002 * 109.46884 * 150.00428 * 6 5 4 38 38 H 0.96998 * 119.99790 * 0.02562 * 10 8 7 39 39 H 1.08992 * 110.30704 * 149.19930 * 13 11 10 40 40 H 1.09003 * 110.30230 * 27.04537 * 13 11 10 41 41 H 1.07993 * 119.89103 * 359.69693 * 15 14 13 42 42 H 1.08002 * 120.02529 * 179.75354 * 16 15 14 43 43 H 1.08005 * 120.02867 * 180.20141 * 17 16 15 44 44 H 1.08001 * 119.88993 * 180.02562 * 18 17 16 45 45 H 0.97010 * 119.99885 * 93.54758 * 22 20 19 46 46 H 0.97004 * 120.00181 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5921 0.6588 -0.0059 5 6 3.6623 -0.6760 -0.0044 6 6 4.9290 -1.4921 -0.0102 7 6 2.3922 -1.1738 0.0022 8 6 1.9913 -2.5921 0.0056 9 8 1.8305 -3.1760 1.0601 10 7 1.8028 -3.2418 -1.1601 11 6 1.4038 -4.6514 -1.1567 12 1 0.7884 -4.8761 -0.2855 13 6 2.6412 -5.5721 -1.2119 14 6 2.8744 -5.8345 -2.6844 15 6 3.9915 -6.3204 -3.3435 16 6 3.9755 -6.4766 -4.7156 17 6 2.8381 -6.1563 -5.4332 18 6 1.7217 -5.6761 -4.7772 19 6 1.7373 -5.5142 -3.4018 20 6 0.6619 -5.0153 -2.4606 21 1 0.1746 -4.1336 -2.8767 22 7 -0.3239 -6.0696 -2.2106 23 6 -1.3832 -6.2327 -3.0631 24 1 -1.4920 -5.5838 -3.9194 25 6 -2.3170 -7.2321 -2.8264 26 7 -3.3354 -7.3885 -3.6455 27 14 -2.1292 -8.3541 -1.3448 28 1 -2.8370 -7.7611 -0.1819 29 1 -2.7129 -9.6842 -1.6540 30 1 -0.6882 -8.5092 -1.0208 31 1 -0.3634 0.0024 1.0276 32 1 -0.3634 0.8888 -0.5159 33 1 -0.3634 -0.8912 -0.5117 34 1 1.9895 2.1011 0.0004 35 1 5.2289 -1.6903 -1.0392 36 1 5.7193 -0.9400 0.4985 37 1 4.7552 -2.4363 0.5059 38 1 1.9314 -2.7761 -2.0012 39 1 2.4409 -6.5068 -0.6883 40 1 3.5053 -5.0710 -0.7755 41 1 4.8803 -6.5709 -2.7835 42 1 4.8496 -6.8520 -5.2270 43 1 2.8229 -6.2810 -6.5059 44 1 0.8335 -5.4265 -5.3385 45 1 -0.2264 -6.6523 -1.4412 46 1 -3.9878 -8.0871 -3.4804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960263895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = -2.383438 kcal Electronic energy + Delta-G solvation = -29469.424885 eV Core-core repulsion = 25517.835098 eV Total energy + Delta-G solvation = -3951.589787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.53883 -41.58893 -40.12541 -37.62518 -35.83969 -34.97601 -34.03388 -33.38672 -33.00579 -31.61919 -29.62568 -28.80613 -27.91926 -27.38000 -25.21226 -24.23478 -23.09715 -21.82210 -21.68447 -21.09177 -20.63331 -19.84310 -18.77553 -17.77809 -17.28981 -17.05204 -16.89038 -16.44912 -16.32376 -15.81005 -15.70188 -15.57966 -15.37225 -14.76168 -14.59040 -14.42145 -14.31042 -14.16865 -14.08544 -14.01358 -13.77604 -13.59507 -13.57658 -13.29391 -13.06831 -12.87386 -12.67360 -12.44630 -12.30254 -12.21597 -12.05579 -11.83979 -11.68693 -11.31706 -11.06164 -10.46481 -10.29987 -9.66053 -9.50028 -9.43674 -9.34659 -8.06399 -5.41292 0.52156 0.57202 0.62273 1.22332 1.34901 1.36770 1.37314 1.43094 1.84823 2.16313 2.43821 2.89963 3.24665 3.32183 3.52561 3.61333 3.67470 3.81724 3.97605 3.99108 4.12632 4.20460 4.25027 4.30308 4.36160 4.42511 4.60015 4.61655 4.64918 4.71342 4.71972 4.75448 4.78618 4.85997 4.92499 4.96299 5.01638 5.17956 5.20781 5.27789 5.36167 5.45140 5.62981 5.68608 5.70851 5.86733 6.06877 6.15627 6.20626 6.39457 6.99469 7.06873 7.72569 7.91672 9.14347 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.003845 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.370907 B = 7281.252622 C = 8807.139132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.172 4.172 3 C -0.026 4.026 4 O -0.175 6.175 5 C 0.049 3.951 6 C -0.081 4.081 7 C -0.261 4.261 8 C 0.601 3.399 9 O -0.573 6.573 10 N -0.690 5.690 11 C 0.143 3.857 12 H 0.087 0.913 13 C -0.079 4.079 14 C -0.100 4.100 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.128 4.128 18 C -0.110 4.110 19 C -0.118 4.118 20 C 0.210 3.790 21 H 0.058 0.942 22 N -0.735 5.735 23 C -0.225 4.225 24 H 0.062 0.938 25 C -0.052 4.052 26 N -0.977 5.977 27 Si 0.943 3.057 28 H -0.279 1.279 29 H -0.294 1.294 30 H -0.255 1.255 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.247 0.753 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.412 0.588 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.143 0.857 42 H 0.152 0.848 43 H 0.138 0.862 44 H 0.098 0.902 45 H 0.366 0.634 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.827 15.095 4.048 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.174 4.174 3 C -0.091 4.091 4 O -0.071 6.071 5 C -0.004 4.004 6 C -0.137 4.137 7 C -0.265 4.265 8 C 0.388 3.612 9 O -0.453 6.453 10 N -0.341 5.341 11 C 0.036 3.964 12 H 0.105 0.895 13 C -0.118 4.118 14 C -0.101 4.101 15 C -0.130 4.130 16 C -0.137 4.137 17 C -0.146 4.146 18 C -0.129 4.129 19 C -0.121 4.121 20 C 0.101 3.899 21 H 0.076 0.924 22 N -0.377 5.377 23 C -0.356 4.356 24 H 0.080 0.920 25 C -0.245 4.245 26 N -0.627 5.627 27 Si 0.770 3.230 28 H -0.205 1.205 29 H -0.220 1.220 30 H -0.180 1.180 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.263 0.737 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.248 0.752 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.161 0.839 42 H 0.170 0.830 43 H 0.156 0.844 44 H 0.116 0.884 45 H 0.200 0.800 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 20.764 14.898 4.625 25.971 hybrid contribution -1.195 -0.997 0.163 1.564 sum 19.570 13.901 4.788 24.477 Atomic orbital electron populations 1.20210 0.88231 1.03285 1.02558 1.21595 0.97440 0.90710 1.07609 1.24321 0.78589 1.00634 1.05581 1.83745 1.30256 1.21504 1.71585 1.22939 0.96258 0.81138 1.00022 1.20585 0.90399 0.97316 1.05428 1.21027 0.94776 0.93087 1.17603 1.17537 0.75392 0.85205 0.83109 1.90780 1.52610 1.69335 1.32536 1.45729 1.68532 1.11005 1.08817 1.21608 0.95754 0.80976 0.98025 0.89465 1.21356 0.97970 0.99616 0.92811 1.20617 0.94337 0.99740 0.95373 1.20859 0.97679 0.99752 0.94714 1.21318 0.98651 0.99886 0.93832 1.21278 0.93070 0.99519 1.00756 1.20735 0.98310 1.00073 0.93749 1.21350 0.95951 1.00558 0.94194 1.19876 0.87532 0.91077 0.91391 0.92406 1.42557 1.26502 1.38156 1.30438 1.18911 0.99416 1.12572 1.04688 0.91997 1.25341 0.97020 1.00789 1.01306 1.69849 1.15867 1.36556 1.40460 0.85596 0.78609 0.78643 0.80129 1.20537 1.22040 1.18005 0.91261 0.88441 0.93398 0.73688 0.87542 0.87822 0.89884 0.75223 0.89637 0.88865 0.83946 0.83020 0.84440 0.88366 0.80043 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 10.38 71.24 0.74 -1.01 16 2 C -0.17 -3.75 6.38 -18.49 -0.12 -3.86 16 3 C -0.03 -0.42 11.96 66.89 0.80 0.38 16 4 O -0.17 -3.26 10.52 4.49 0.05 -3.21 16 5 C 0.05 0.99 7.37 25.26 0.19 1.17 16 6 C -0.08 -1.12 10.24 71.23 0.73 -0.39 16 7 C -0.26 -6.59 6.07 -18.99 -0.12 -6.70 16 8 C 0.60 18.13 7.25 86.65 0.63 18.76 16 9 O -0.57 -21.72 16.75 -4.06 -0.07 -21.79 16 10 N -0.69 -19.23 5.11 -441.47 -2.25 -21.49 16 11 C 0.14 4.62 3.03 45.91 0.14 4.76 16 12 H 0.09 3.24 7.46 -2.39 -0.02 3.22 16 13 C -0.08 -2.25 6.49 30.52 0.20 -2.05 16 14 C -0.10 -2.95 6.14 -19.59 -0.12 -3.07 16 15 C -0.11 -2.74 10.04 22.30 0.22 -2.51 16 16 C -0.12 -2.77 10.05 22.24 0.22 -2.55 16 17 C -0.13 -3.55 10.05 22.24 0.22 -3.32 16 18 C -0.11 -3.82 10.04 22.30 0.22 -3.59 16 19 C -0.12 -4.13 5.76 -19.60 -0.11 -4.24 16 20 C 0.21 8.02 3.11 44.92 0.14 8.16 16 21 H 0.06 2.30 8.05 -2.39 -0.02 2.28 16 22 N -0.73 -34.42 4.96 -323.28 -1.60 -36.03 16 23 C -0.23 -12.69 10.44 84.03 0.88 -11.81 16 24 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 25 C -0.05 -3.09 5.50 84.86 0.47 -2.62 16 26 N -0.98 -62.32 13.97 21.65 0.30 -62.02 16 27 Si 0.94 46.09 27.74 68.60 1.90 47.99 16 28 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 29 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 30 H -0.26 -11.46 6.52 99.48 0.65 -10.81 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.25 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.32 7.93 -2.39 -0.02 1.30 16 38 H 0.41 10.02 8.64 -92.71 -0.80 9.22 16 39 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 40 H 0.09 2.26 8.09 -2.39 -0.02 2.25 16 41 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 42 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 43 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 44 H 0.10 3.73 8.06 -2.91 -0.02 3.70 16 45 H 0.37 16.82 5.65 -92.70 -0.52 16.30 16 46 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -76.48 391.41 3.29 -73.18 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -0.37 Total: 37.86 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 5.33 Total: -14.50 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -3.55 Total: -119.53 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.02 Total: -25.00 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 47.99 kcal Total: -76.48 3.29 -73.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960263895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.800 kcal (2) G-P(sol) polarization free energy of solvation -76.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds