Wall clock time and date at job start Sat Apr 11 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46596 * 2 1 4 4 O 1.33804 * 125.07675 * 270.02552 * 3 2 1 5 5 C 1.34905 * 111.34854 * 179.97438 * 4 3 2 6 6 C 1.38978 * 133.11417 * 180.02562 * 5 4 3 7 7 C 1.37839 * 119.97182 * 179.97438 * 6 5 4 8 8 C 1.38687 * 120.65559 * 359.97438 * 7 6 5 9 9 C 1.37836 * 120.20073 * 0.03569 * 8 7 6 10 10 C 1.39112 * 119.63304 * 359.69766 * 9 8 7 11 11 C 1.36061 * 125.07194 * 90.00568 * 3 2 1 12 12 C 1.47077 * 127.14146 * 359.97438 * 11 3 2 13 13 O 1.21647 * 120.00248 * 89.99561 * 12 11 3 14 14 N 1.34775 * 120.00044 * 270.00497 * 12 11 3 15 15 C 1.47869 * 126.94204 * 359.97438 * 14 12 11 16 16 C 1.58438 * 104.82832 * 182.30812 * 15 14 12 17 17 H 1.09004 * 116.62205 * 159.51493 * 16 15 14 18 18 C 1.57432 * 99.62416 * 32.32616 * 16 15 14 19 19 C 1.49289 * 126.94654 * 180.02562 * 14 12 11 20 20 H 1.09001 * 116.14977 * 15.83463 * 19 14 12 21 21 C 1.56021 * 104.09236 * 246.69520 * 19 14 12 22 22 N 1.47867 * 105.10039 * 287.91871 * 21 19 14 23 23 C 1.36943 * 126.94301 * 181.97834 * 22 21 19 24 24 H 1.08002 * 119.99788 * 180.02562 * 23 22 21 25 25 C 1.38811 * 119.99622 * 0.30365 * 23 22 21 26 26 N 1.31614 * 120.00467 * 359.72375 * 25 23 22 27 27 Si 1.86801 * 119.99700 * 179.72266 * 25 23 22 28 28 H 1.48504 * 109.47306 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47021 * 119.99661 * 27 25 23 30 30 H 1.48501 * 109.47039 * 240.00078 * 27 25 23 31 31 H 1.09008 * 109.46963 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47112 * 299.99343 * 1 2 3 33 33 H 1.08997 * 109.47460 * 59.99793 * 1 2 3 34 34 H 1.08999 * 109.47112 * 240.00657 * 2 1 3 35 35 H 1.08997 * 109.47460 * 120.00207 * 2 1 3 36 36 H 1.07992 * 120.00778 * 359.94657 * 6 5 4 37 37 H 1.07998 * 119.66869 * 179.97438 * 7 6 5 38 38 H 1.08007 * 119.89647 * 180.02562 * 8 7 6 39 39 H 1.08005 * 120.18368 * 179.97438 * 9 8 7 40 40 H 1.08999 * 110.31556 * 300.91134 * 15 14 12 41 41 H 1.08998 * 110.31541 * 62.99831 * 15 14 12 42 42 H 1.09001 * 112.53430 * 192.40658 * 18 16 15 43 43 H 1.09008 * 112.31560 * 64.87226 * 18 16 15 44 44 H 1.08996 * 110.31219 * 169.01474 * 21 19 14 45 45 H 1.08993 * 110.40010 * 46.87080 * 21 19 14 46 46 H 0.96995 * 120.00147 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2880 2.1460 -1.0950 5 6 2.7243 3.3817 -0.7749 6 6 3.1111 4.4790 -1.5350 7 6 3.5202 5.6386 -0.9120 8 6 3.5504 5.7250 0.4718 9 6 3.1707 4.6470 1.2423 10 6 2.7508 3.4736 0.6242 11 6 2.2929 2.1579 1.1136 12 6 2.1428 1.7345 2.5140 13 8 3.0738 1.2078 3.0934 14 7 0.9736 1.9297 3.1555 15 6 -0.2497 2.5507 2.6040 16 6 -1.2745 2.5704 3.8121 17 1 -2.1008 3.2778 3.7403 18 6 -0.2678 2.7571 5.0081 19 6 0.6524 1.5637 4.5667 20 1 1.5031 1.3415 5.2109 21 6 -0.4233 0.4416 4.4327 22 7 -1.6491 1.1350 3.9820 23 6 -2.8781 0.5731 3.7598 24 1 -3.7015 1.1888 3.4292 25 6 -3.0668 -0.7867 3.9650 26 7 -2.0633 -1.5370 4.3678 27 14 -4.7451 -1.5518 3.6693 28 1 -5.6964 -0.5017 3.2246 29 1 -4.6348 -2.5968 2.6200 30 1 -5.2385 -2.1647 4.9287 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.0915 4.4230 -2.6133 37 1 3.8201 6.4882 -1.5075 38 1 3.8727 6.6397 0.9472 39 1 3.1948 4.7144 2.3200 40 1 -0.0410 3.5674 2.2710 41 1 -0.6372 1.9546 1.7777 42 1 -0.7346 2.5845 5.9778 43 1 0.2492 3.7159 4.9681 44 1 -0.5924 -0.0376 5.3970 45 1 -0.1124 -0.2964 3.6934 46 1 -2.1952 -2.4873 4.5109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032803623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:18 Heat of formation + Delta-G solvation = 53.424155 kcal Electronic energy + Delta-G solvation = -30679.263413 eV Core-core repulsion = 26730.093625 eV Total energy + Delta-G solvation = -3949.169788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.60230 -39.90532 -38.02107 -37.70886 -34.26386 -33.59431 -32.38253 -31.42082 -30.48595 -29.12132 -28.68924 -28.38022 -25.24818 -24.56862 -23.92230 -22.89037 -22.57365 -21.18497 -20.23423 -19.77528 -18.60170 -17.74151 -17.08593 -16.63129 -16.44246 -15.89952 -15.67553 -15.39721 -14.95109 -14.40560 -14.20069 -13.96062 -13.89906 -13.84265 -13.43994 -13.30073 -12.81475 -12.53814 -12.21136 -12.17592 -12.10762 -11.84911 -11.70692 -11.45819 -11.32939 -11.16181 -11.03142 -10.92467 -10.87217 -10.69941 -10.63067 -10.22095 -10.11407 -10.04200 -9.68546 -9.61728 -8.74665 -8.73047 -8.15260 -8.03456 -6.95702 -5.80435 -3.14720 0.78483 1.22606 2.09339 2.53369 2.85545 3.33936 3.39856 3.40162 3.42512 3.61257 4.27177 4.38692 4.52856 4.80029 4.86336 5.00300 5.06732 5.10224 5.11944 5.16616 5.28423 5.31512 5.35129 5.44094 5.50851 5.54469 5.60411 5.74264 5.75408 5.95558 5.97283 6.05410 6.07427 6.11211 6.17568 6.22786 6.27917 6.31046 6.36985 6.42806 6.54243 6.56736 6.60040 6.75469 7.07847 7.39191 7.44828 7.68566 8.02350 8.06688 8.52842 9.06780 9.67505 10.36620 11.31480 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015422 B = 0.003788 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.146613 B = 7389.113380 C = 8021.276867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.053 4.053 3 C 0.091 3.909 4 O -0.184 6.184 5 C 0.049 3.951 6 C -0.104 4.104 7 C -0.099 4.099 8 C -0.132 4.132 9 C -0.070 4.070 10 C -0.093 4.093 11 C -0.212 4.212 12 C 0.605 3.395 13 O -0.546 6.546 14 N -0.593 5.593 15 C 0.081 3.919 16 C 0.143 3.857 17 H 0.107 0.893 18 C -0.150 4.150 19 C 0.097 3.903 20 H 0.113 0.887 21 C 0.175 3.825 22 N -0.596 5.596 23 C -0.231 4.231 24 H 0.081 0.919 25 C -0.003 4.003 26 N -0.918 5.918 27 Si 0.909 3.091 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.370 12.410 -9.051 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.090 4.090 3 C 0.041 3.959 4 O -0.085 6.085 5 C 0.002 3.998 6 C -0.122 4.122 7 C -0.117 4.117 8 C -0.150 4.150 9 C -0.088 4.088 10 C -0.095 4.095 11 C -0.217 4.217 12 C 0.392 3.608 13 O -0.425 6.425 14 N -0.326 5.326 15 C -0.045 4.045 16 C 0.033 3.967 17 H 0.125 0.875 18 C -0.189 4.189 19 C -0.005 4.005 20 H 0.131 0.869 21 C 0.050 3.950 22 N -0.320 5.320 23 C -0.358 4.358 24 H 0.098 0.902 25 C -0.200 4.200 26 N -0.564 5.564 27 Si 0.740 3.260 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.752 11.752 -9.046 17.220 hybrid contribution -0.783 -0.467 -0.181 0.929 sum 7.969 11.286 -9.226 16.613 Atomic orbital electron populations 1.21884 0.92097 1.03701 1.03312 1.20404 0.97750 0.86025 1.04813 1.22710 0.96399 0.94376 0.82369 1.83783 1.69052 1.21810 1.33861 1.19531 1.01641 0.85399 0.93240 1.19913 1.02834 0.89875 0.99599 1.20873 0.99477 0.96669 0.94727 1.21015 1.01745 0.98570 0.93701 1.20519 0.97136 0.90965 1.00205 1.19490 1.03405 0.93906 0.92668 1.20612 1.12354 0.94511 0.94193 1.16653 0.81509 0.78591 0.84039 1.90784 1.39446 1.44653 1.67628 1.49105 1.11124 1.58512 1.13825 1.23846 0.85449 0.95913 0.99252 1.23705 0.93165 0.89042 0.90739 0.87503 1.24172 0.97953 0.96844 0.99943 1.24356 0.97230 0.97645 0.81293 0.86897 1.21928 0.82822 0.90339 0.99921 1.45259 1.07442 1.01138 1.78122 1.19082 0.86000 0.91552 1.39209 0.90161 1.24781 0.97579 0.96229 1.01426 1.69917 1.29387 1.05424 1.51696 0.86090 0.83304 0.79181 0.77418 1.20490 1.21781 1.21767 0.90815 0.90434 0.92515 0.89434 0.88106 0.85040 0.84789 0.85226 0.85583 0.93114 0.90759 0.89563 0.91710 0.92526 0.93371 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.89 37.16 0.37 -1.94 16 2 C -0.05 -0.77 6.25 -27.88 -0.17 -0.94 16 3 C 0.09 1.45 6.55 -35.09 -0.23 1.22 16 4 O -0.18 -2.80 10.53 5.35 0.06 -2.74 16 5 C 0.05 0.70 7.39 -38.56 -0.28 0.41 16 6 C -0.10 -1.15 10.06 -39.45 -0.40 -1.54 16 7 C -0.10 -0.93 10.01 -39.56 -0.40 -1.33 16 8 C -0.13 -1.36 10.04 -39.56 -0.40 -1.75 16 9 C -0.07 -0.93 10.09 -39.40 -0.40 -1.32 16 10 C -0.09 -1.45 6.39 -104.98 -0.67 -2.12 16 11 C -0.21 -3.69 5.33 -103.25 -0.55 -4.24 16 12 C 0.60 11.80 7.28 -12.68 -0.09 11.71 16 13 O -0.55 -12.27 17.45 5.24 0.09 -12.17 16 14 N -0.59 -11.07 2.95 -156.60 -0.46 -11.54 16 15 C 0.08 1.41 6.11 -0.29 0.00 1.41 16 16 C 0.14 2.59 5.63 -60.94 -0.34 2.25 16 17 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 18 C -0.15 -2.48 6.85 -22.13 -0.15 -2.64 16 19 C 0.10 1.85 5.19 -62.58 -0.32 1.52 16 20 H 0.11 2.10 8.05 -51.93 -0.42 1.69 16 21 C 0.17 4.04 4.75 -1.68 -0.01 4.03 16 22 N -0.60 -13.71 3.02 -154.60 -0.47 -14.18 16 23 C -0.23 -5.89 10.38 -15.06 -0.16 -6.05 16 24 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 25 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 26 N -0.92 -25.69 10.56 55.49 0.59 -25.10 16 27 Si 0.91 21.10 29.55 -169.99 -5.02 16.08 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 31 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 32 H 0.08 1.40 5.56 -51.93 -0.29 1.11 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.60 7.86 -51.93 -0.41 1.19 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.40 5.56 -51.93 -0.29 1.11 16 42 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 43 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 44 H 0.06 1.45 7.45 -51.93 -0.39 1.06 16 45 H 0.05 1.27 7.68 -51.93 -0.40 0.87 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 376.58 15.07 5.67 5.67 Total: -1.00 -31.11 376.58 -10.23 -41.34 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.39 Total: 4.13 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -4.30 Total: -1.49 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.34 Total: -50.82 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.15 Total: -14.91 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.11 -10.23 -41.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032803623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.763 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds