Wall clock time and date at job start Sat Apr 11 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46596 * 2 1 4 4 O 1.33804 * 125.07675 * 270.02552 * 3 2 1 5 5 C 1.34905 * 111.34854 * 179.97438 * 4 3 2 6 6 C 1.38978 * 133.11417 * 180.02562 * 5 4 3 7 7 C 1.37839 * 119.97182 * 179.97438 * 6 5 4 8 8 C 1.38687 * 120.65559 * 359.97438 * 7 6 5 9 9 C 1.37836 * 120.20073 * 0.03569 * 8 7 6 10 10 C 1.39112 * 119.63304 * 359.69766 * 9 8 7 11 11 C 1.36061 * 125.07194 * 90.00568 * 3 2 1 12 12 C 1.47077 * 127.14146 * 359.97438 * 11 3 2 13 13 O 1.21647 * 120.00248 * 89.99561 * 12 11 3 14 14 N 1.34775 * 120.00044 * 270.00497 * 12 11 3 15 15 C 1.47869 * 126.94204 * 359.97438 * 14 12 11 16 16 C 1.58438 * 104.82832 * 182.30812 * 15 14 12 17 17 H 1.09004 * 116.62205 * 159.51493 * 16 15 14 18 18 C 1.57432 * 99.62416 * 32.32616 * 16 15 14 19 19 C 1.49289 * 126.94654 * 180.02562 * 14 12 11 20 20 H 1.09001 * 116.14977 * 15.83463 * 19 14 12 21 21 C 1.56021 * 104.09236 * 246.69520 * 19 14 12 22 22 N 1.47867 * 105.10039 * 287.91871 * 21 19 14 23 23 C 1.36943 * 126.94301 * 181.97834 * 22 21 19 24 24 H 1.08002 * 119.99788 * 180.02562 * 23 22 21 25 25 C 1.38811 * 119.99622 * 0.30365 * 23 22 21 26 26 N 1.31614 * 120.00467 * 359.72375 * 25 23 22 27 27 Si 1.86801 * 119.99700 * 179.72266 * 25 23 22 28 28 H 1.48504 * 109.47306 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47021 * 119.99661 * 27 25 23 30 30 H 1.48501 * 109.47039 * 240.00078 * 27 25 23 31 31 H 1.09008 * 109.46963 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47112 * 299.99343 * 1 2 3 33 33 H 1.08997 * 109.47460 * 59.99793 * 1 2 3 34 34 H 1.08999 * 109.47112 * 240.00657 * 2 1 3 35 35 H 1.08997 * 109.47460 * 120.00207 * 2 1 3 36 36 H 1.07992 * 120.00778 * 359.94657 * 6 5 4 37 37 H 1.07998 * 119.66869 * 179.97438 * 7 6 5 38 38 H 1.08007 * 119.89647 * 180.02562 * 8 7 6 39 39 H 1.08005 * 120.18368 * 179.97438 * 9 8 7 40 40 H 1.08999 * 110.31556 * 300.91134 * 15 14 12 41 41 H 1.08998 * 110.31541 * 62.99831 * 15 14 12 42 42 H 1.09001 * 112.53430 * 192.40658 * 18 16 15 43 43 H 1.09008 * 112.31560 * 64.87226 * 18 16 15 44 44 H 1.08996 * 110.31219 * 169.01474 * 21 19 14 45 45 H 1.08993 * 110.40010 * 46.87080 * 21 19 14 46 46 H 0.96995 * 120.00147 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2880 2.1460 -1.0950 5 6 2.7243 3.3817 -0.7749 6 6 3.1111 4.4790 -1.5350 7 6 3.5202 5.6386 -0.9120 8 6 3.5504 5.7250 0.4718 9 6 3.1707 4.6470 1.2423 10 6 2.7508 3.4736 0.6242 11 6 2.2929 2.1579 1.1136 12 6 2.1428 1.7345 2.5140 13 8 3.0738 1.2078 3.0934 14 7 0.9736 1.9297 3.1555 15 6 -0.2497 2.5507 2.6040 16 6 -1.2745 2.5704 3.8121 17 1 -2.1008 3.2778 3.7403 18 6 -0.2678 2.7571 5.0081 19 6 0.6524 1.5637 4.5667 20 1 1.5031 1.3415 5.2109 21 6 -0.4233 0.4416 4.4327 22 7 -1.6491 1.1350 3.9820 23 6 -2.8781 0.5731 3.7598 24 1 -3.7015 1.1888 3.4292 25 6 -3.0668 -0.7867 3.9650 26 7 -2.0633 -1.5370 4.3678 27 14 -4.7451 -1.5518 3.6693 28 1 -5.6964 -0.5017 3.2246 29 1 -4.6348 -2.5968 2.6200 30 1 -5.2385 -2.1647 4.9287 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.0915 4.4230 -2.6133 37 1 3.8201 6.4882 -1.5075 38 1 3.8727 6.6397 0.9472 39 1 3.1948 4.7144 2.3200 40 1 -0.0410 3.5674 2.2710 41 1 -0.6372 1.9546 1.7777 42 1 -0.7346 2.5845 5.9778 43 1 0.2492 3.7159 4.9681 44 1 -0.5924 -0.0376 5.3970 45 1 -0.1124 -0.2964 3.6934 46 1 -2.1952 -2.4873 4.5109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032803623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:17 Heat of formation + Delta-G solvation = 36.854274 kcal Electronic energy + Delta-G solvation = -30679.981937 eV Core-core repulsion = 26730.093625 eV Total energy + Delta-G solvation = -3949.888312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.69834 -41.47768 -39.31869 -38.92801 -35.59840 -35.31668 -33.63256 -33.00188 -31.42739 -30.74360 -30.19120 -29.69379 -26.99260 -25.94912 -25.32383 -24.01667 -23.86220 -22.27177 -21.67231 -21.36552 -20.08399 -19.17528 -18.32891 -18.06701 -17.78851 -17.28720 -17.07800 -16.57719 -16.30942 -16.04909 -15.61364 -15.21661 -15.16931 -15.02764 -14.86172 -14.69462 -14.07493 -13.85214 -13.73297 -13.49081 -13.41877 -13.15738 -13.13520 -12.91831 -12.83045 -12.74730 -12.62344 -12.39826 -12.20160 -12.18010 -12.00478 -11.93236 -11.77568 -11.52114 -11.32401 -11.05372 -10.73271 -9.66441 -9.63332 -9.21242 -8.89344 -7.82304 -5.17587 -0.20722 0.30587 0.95482 1.34343 1.44040 1.47878 1.48921 1.58290 1.96282 2.49357 2.70122 3.18319 3.28841 3.34749 3.46230 3.70160 3.79578 3.83760 3.87472 3.94572 4.02488 4.09571 4.09650 4.16722 4.22524 4.33377 4.42931 4.50886 4.52671 4.60877 4.74439 4.79282 4.81405 4.86497 4.91351 4.98090 5.07556 5.09511 5.15598 5.22746 5.33924 5.36129 5.45608 5.46310 5.53178 5.64065 5.67526 6.05218 6.10655 6.50715 6.98527 7.05150 7.72264 8.42766 9.28792 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015422 B = 0.003788 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.146613 B = 7389.113380 C = 8021.276867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C 0.089 3.911 4 O -0.185 6.185 5 C 0.027 3.973 6 C -0.104 4.104 7 C -0.085 4.085 8 C -0.118 4.118 9 C -0.094 4.094 10 C -0.118 4.118 11 C -0.238 4.238 12 C 0.606 3.394 13 O -0.587 6.587 14 N -0.591 5.591 15 C 0.090 3.910 16 C 0.140 3.860 17 H 0.136 0.864 18 C -0.127 4.127 19 C 0.098 3.902 20 H 0.114 0.886 21 C 0.191 3.809 22 N -0.611 5.611 23 C -0.228 4.228 24 H 0.093 0.907 25 C -0.063 4.063 26 N -0.952 5.952 27 Si 0.970 3.030 28 H -0.261 1.261 29 H -0.299 1.299 30 H -0.298 1.298 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.159 0.841 37 H 0.179 0.821 38 H 0.164 0.836 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.022 0.978 45 H 0.002 0.998 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.410 16.496 -11.113 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 C 0.039 3.961 4 O -0.086 6.086 5 C -0.019 4.019 6 C -0.122 4.122 7 C -0.102 4.102 8 C -0.136 4.136 9 C -0.112 4.112 10 C -0.120 4.120 11 C -0.243 4.243 12 C 0.395 3.605 13 O -0.469 6.469 14 N -0.323 5.323 15 C -0.035 4.035 16 C 0.033 3.967 17 H 0.154 0.846 18 C -0.166 4.166 19 C -0.005 4.005 20 H 0.132 0.868 21 C 0.065 3.935 22 N -0.335 5.335 23 C -0.356 4.356 24 H 0.111 0.889 25 C -0.256 4.256 26 N -0.601 5.601 27 Si 0.800 3.200 28 H -0.185 1.185 29 H -0.227 1.227 30 H -0.226 1.226 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.135 0.865 35 H 0.096 0.904 36 H 0.177 0.823 37 H 0.196 0.804 38 H 0.181 0.819 39 H 0.139 0.861 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.040 0.960 45 H 0.020 0.980 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.770 15.909 -11.125 21.302 hybrid contribution -0.719 -1.593 0.402 1.793 sum 8.051 14.316 -10.724 19.615 Atomic orbital electron populations 1.21764 0.92529 1.03277 1.02456 1.20348 0.97214 0.85934 1.05106 1.22730 0.96280 0.94578 0.82498 1.83754 1.69243 1.22444 1.33171 1.20047 1.02808 0.85727 0.93343 1.20425 1.01682 0.89067 1.00988 1.21444 0.96985 0.97104 0.94692 1.21466 0.99361 0.98524 0.94205 1.20699 0.98584 0.91396 1.00496 1.19650 1.05001 0.93849 0.93477 1.20546 1.14317 0.96449 0.92956 1.17006 0.81025 0.77593 0.84887 1.90742 1.40814 1.46469 1.68828 1.49124 1.11417 1.58128 1.13589 1.23731 0.84557 0.96847 0.98317 1.24083 0.94336 0.86760 0.91507 0.84649 1.24078 0.96423 0.96903 0.99162 1.24248 0.96606 0.97469 0.82166 0.86796 1.21505 0.84524 0.90897 0.96608 1.45457 1.06650 1.03497 1.77940 1.19507 0.87150 0.91761 1.37205 0.88911 1.25534 1.00545 0.97049 1.02430 1.70141 1.31254 1.04944 1.53809 0.85119 0.80087 0.78342 0.76453 1.18503 1.22650 1.22587 0.91023 0.93727 0.90670 0.86461 0.90431 0.82343 0.80406 0.81883 0.86059 0.90343 0.92369 0.89371 0.88291 0.96004 0.97966 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.89 71.98 0.71 -3.79 16 2 C -0.05 -1.48 6.25 29.85 0.19 -1.30 16 3 C 0.09 2.91 6.55 25.18 0.16 3.07 16 4 O -0.19 -5.51 10.53 -3.77 -0.04 -5.55 16 5 C 0.03 0.73 7.39 22.93 0.17 0.90 16 6 C -0.10 -1.90 10.06 22.35 0.22 -1.67 16 7 C -0.08 -1.16 10.01 22.28 0.22 -0.93 16 8 C -0.12 -1.92 10.04 22.28 0.22 -1.70 16 9 C -0.09 -2.30 10.09 22.38 0.23 -2.08 16 10 C -0.12 -3.60 6.39 -20.10 -0.13 -3.72 16 11 C -0.24 -8.49 5.33 -18.98 -0.10 -8.59 16 12 C 0.61 24.68 7.28 86.56 0.63 25.31 16 13 O -0.59 -27.84 17.45 -4.18 -0.07 -27.92 16 14 N -0.59 -22.63 2.95 -767.61 -2.27 -24.90 16 15 C 0.09 3.10 6.11 88.06 0.54 3.63 16 16 C 0.14 4.89 5.63 47.95 0.27 5.16 16 17 H 0.14 4.00 8.14 -2.38 -0.02 3.98 16 18 C -0.13 -4.00 6.85 33.57 0.23 -3.77 16 19 C 0.10 3.84 5.19 46.91 0.24 4.08 16 20 H 0.11 4.43 8.05 -2.39 -0.02 4.41 16 21 C 0.19 9.33 4.75 87.16 0.41 9.75 16 22 N -0.61 -28.66 3.02 -643.03 -1.94 -30.60 16 23 C -0.23 -11.74 10.38 84.03 0.87 -10.87 16 24 H 0.09 4.47 7.83 -2.91 -0.02 4.44 16 25 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 26 N -0.95 -56.34 10.56 21.65 0.23 -56.11 16 27 Si 0.97 44.34 29.55 68.60 2.03 46.37 16 28 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 29 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 30 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 31 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.04 1.70 5.56 -2.39 -0.01 1.68 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.08 2.69 7.86 -2.39 -0.02 2.67 16 36 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 39 H 0.12 2.98 8.06 -2.91 -0.02 2.96 16 40 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.06 2.24 5.56 -2.39 -0.01 2.23 16 42 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 44 H 0.02 1.20 7.45 -2.39 -0.02 1.19 16 45 H 0.00 0.12 7.68 -2.39 -0.02 0.11 16 46 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -73.20 376.58 4.49 -68.71 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 1.00 Total: 19.46 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.56 Total: 10.54 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -3.98 Total: -111.61 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.11 Total: -33.46 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -73.20 4.49 -68.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032803623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.561 kcal (2) G-P(sol) polarization free energy of solvation -73.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds