Wall clock time and date at job start Sat Apr 11 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40359 * 126.64527 * 2 1 4 4 C 1.35133 * 107.11543 * 179.97438 * 3 2 1 5 5 O 1.33934 * 108.76847 * 359.97438 * 4 3 2 6 6 C 1.34919 * 109.37964 * 0.02562 * 5 4 3 7 7 C 1.46662 * 125.98185 * 180.26471 * 6 5 4 8 8 O 1.21697 * 119.99355 * 179.69023 * 7 6 5 9 9 N 1.34772 * 120.00419 * 359.68829 * 7 6 5 10 10 C 1.46499 * 120.00361 * 180.02562 * 9 7 6 11 11 C 1.50692 * 109.47308 * 179.97438 * 10 9 7 12 12 C 1.37954 * 119.71004 * 259.99954 * 11 10 9 13 13 C 1.38221 * 119.82671 * 180.02562 * 12 11 10 14 14 C 1.38010 * 119.72105 * 0.26362 * 13 12 11 15 15 C 1.38784 * 120.50026 * 359.83758 * 14 13 12 16 16 C 1.37725 * 119.84953 * 359.44393 * 15 14 13 17 17 C 1.50592 * 122.84906 * 181.02306 * 16 15 14 18 18 C 1.52791 * 110.92241 * 340.15325 * 17 16 15 19 19 N 1.47229 * 107.91213 * 47.32189 * 18 17 16 20 20 C 1.36937 * 121.32816 * 115.77614 * 19 18 17 21 21 H 1.08006 * 119.99745 * 335.42115 * 20 19 18 22 22 C 1.38806 * 119.99849 * 155.41950 * 20 19 18 23 23 N 1.31615 * 120.00474 * 344.26352 * 22 20 19 24 24 Si 1.86807 * 119.99845 * 164.26707 * 22 20 19 25 25 H 1.48498 * 109.47138 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47001 * 119.99666 * 24 22 20 27 27 H 1.48500 * 109.47172 * 239.99721 * 24 22 20 28 28 C 1.46685 * 117.34484 * 295.80370 * 19 18 17 29 29 H 1.09006 * 109.46826 * 270.00497 * 1 2 3 30 30 H 1.08995 * 109.46801 * 30.00176 * 1 2 3 31 31 H 1.09002 * 109.47050 * 150.00494 * 1 2 3 32 32 H 1.08001 * 126.44662 * 0.02562 * 3 2 1 33 33 H 1.08000 * 125.61936 * 180.02562 * 4 3 2 34 34 H 0.97005 * 119.99864 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.46862 * 300.00183 * 10 9 7 36 36 H 1.09001 * 109.46804 * 59.99576 * 10 9 7 37 37 H 1.08000 * 120.08870 * 0.10035 * 12 11 10 38 38 H 1.08004 * 120.14380 * 180.28069 * 13 12 11 39 39 H 1.07996 * 119.75097 * 179.86074 * 14 13 12 40 40 H 1.09001 * 109.33429 * 219.67154 * 17 16 15 41 41 H 1.08993 * 108.95653 * 100.39422 * 17 16 15 42 42 H 1.09004 * 109.77321 * 287.71766 * 18 17 16 43 43 H 1.09002 * 109.81767 * 166.95173 * 18 17 16 44 44 H 0.97002 * 120.00390 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.43011 * 284.32477 * 28 19 18 46 46 H 1.08998 * 109.43153 * 164.45940 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 0.0006 5 8 3.6006 -0.6648 0.0015 6 6 2.3220 -1.0955 0.0010 7 6 1.8843 -2.4953 0.0071 8 8 0.6968 -2.7614 0.0116 9 7 2.7971 -3.4869 0.0077 10 6 2.3599 -4.8851 0.0133 11 6 3.5659 -5.7886 0.0123 12 6 3.9846 -6.3686 -1.1673 13 6 5.0902 -7.1981 -1.1710 14 6 5.7646 -7.4446 0.0076 15 6 5.3429 -6.8633 1.1953 16 6 4.2504 -6.0248 1.1980 17 6 3.7487 -5.3409 2.4424 18 6 4.2561 -6.0501 3.6970 19 7 5.6998 -6.2863 3.5311 20 6 6.6180 -5.6894 4.3532 21 1 6.3723 -4.7661 4.8568 22 6 7.8645 -6.2711 4.5393 23 7 8.0642 -7.5248 4.1919 24 14 9.2586 -5.2746 5.2829 25 1 8.7797 -3.9016 5.5843 26 1 9.7186 -5.9252 6.5360 27 1 10.3860 -5.2045 4.3188 28 6 6.1155 -7.1859 2.4496 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 2.0307 2.1595 0.0004 33 1 4.5047 1.2916 0.0011 34 1 3.7436 -3.2747 0.0045 35 1 1.7634 -5.0756 0.9056 36 1 1.7585 -5.0812 -0.8744 37 1 3.4507 -6.1740 -2.0857 38 1 5.4252 -7.6513 -2.0924 39 1 6.6271 -8.0945 0.0057 40 1 2.6587 -5.3472 2.4431 41 1 4.1012 -4.3096 2.4462 42 1 3.7382 -7.0016 3.8177 43 1 4.0832 -5.4228 4.5715 44 1 8.9352 -7.9314 4.3223 45 1 5.9196 -8.2178 2.7410 46 1 7.1816 -7.0588 2.2618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051278955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:24 Heat of formation + Delta-G solvation = 22.874960 kcal Electronic energy + Delta-G solvation = -29207.285276 eV Core-core repulsion = 25256.790776 eV Total energy + Delta-G solvation = -3950.494501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.87219 -39.98448 -39.06429 -36.03684 -35.19327 -34.14870 -32.77224 -31.83725 -30.58089 -30.14642 -28.92562 -27.83613 -25.84097 -25.57113 -23.20407 -22.90320 -22.14077 -21.43868 -20.56407 -19.97680 -19.03280 -18.27316 -16.81790 -16.56278 -16.28836 -16.13681 -15.69920 -15.35349 -14.86979 -14.50225 -14.43483 -14.23293 -13.67724 -13.61264 -13.33182 -13.23518 -13.16616 -12.93811 -12.74158 -12.65090 -12.57227 -12.36757 -11.99473 -11.95911 -11.54500 -11.27975 -10.98048 -10.88610 -10.75899 -10.36678 -10.28032 -10.16512 -9.91839 -9.90408 -9.75212 -9.22572 -8.72462 -8.71446 -8.29971 -7.90165 -6.80969 -5.86431 -3.26003 0.90567 1.57681 1.85478 2.14072 2.58006 3.07171 3.25385 3.33639 3.41618 3.43621 4.19025 4.43707 4.50658 4.57106 4.72324 4.88423 5.11408 5.24418 5.25970 5.29722 5.32456 5.39271 5.48565 5.51498 5.54571 5.55428 5.70344 5.81568 5.83974 5.94097 5.96708 6.09972 6.11684 6.17654 6.19987 6.31383 6.45814 6.53096 6.63890 6.67065 6.82250 6.82918 6.92592 7.08637 7.18953 7.41130 7.42980 7.58511 7.73191 8.00217 8.31873 9.12780 9.75116 10.33040 11.24074 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010734 B = 0.003329 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.948148 B = 8408.534307 C = 9940.903692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.089 4.089 3 C -0.228 4.228 4 C -0.002 4.002 5 O -0.161 6.161 6 C -0.084 4.084 7 C 0.602 3.398 8 O -0.524 6.524 9 N -0.709 5.709 10 C 0.166 3.834 11 C -0.127 4.127 12 C -0.117 4.117 13 C -0.132 4.132 14 C -0.112 4.112 15 C -0.077 4.077 16 C -0.045 4.045 17 C -0.100 4.100 18 C 0.142 3.858 19 N -0.593 5.593 20 C -0.248 4.248 21 H 0.070 0.930 22 C 0.001 3.999 23 N -0.908 5.908 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.205 3.795 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.210 0.790 34 H 0.408 0.592 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.060 0.940 44 H 0.254 0.746 45 H 0.041 0.959 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.337 11.413 -11.882 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.247 4.247 4 C -0.072 4.072 5 O -0.056 6.056 6 C -0.136 4.136 7 C 0.389 3.611 8 O -0.403 6.403 9 N -0.359 5.359 10 C 0.044 3.956 11 C -0.127 4.127 12 C -0.135 4.135 13 C -0.150 4.150 14 C -0.131 4.131 15 C -0.079 4.079 16 C -0.045 4.045 17 C -0.139 4.139 18 C 0.015 3.985 19 N -0.315 5.315 20 C -0.377 4.377 21 H 0.088 0.912 22 C -0.197 4.197 23 N -0.553 5.553 24 Si 0.734 3.266 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.215 1.215 28 C 0.079 3.921 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.173 0.827 33 H 0.226 0.774 34 H 0.243 0.757 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.779 10.894 -11.813 19.350 hybrid contribution 1.404 0.771 0.264 1.623 sum -9.375 11.664 -11.549 18.903 Atomic orbital electron populations 1.20419 0.88241 1.03456 1.02930 1.20634 0.97650 0.90985 0.99969 1.21735 0.92448 1.00123 1.10399 1.24387 0.99992 0.80647 1.02163 1.84101 1.28299 1.22702 1.70495 1.21897 0.81546 0.94852 1.15289 1.16522 0.85724 0.81810 0.77060 1.90836 1.15673 1.82416 1.51350 1.46025 1.10219 1.05920 1.73723 1.20229 0.94436 0.78125 1.02851 1.19763 0.97977 1.01040 0.93930 1.20758 0.97470 0.98646 0.96651 1.20938 0.96451 0.99738 0.97862 1.21202 0.99860 0.99830 0.92194 1.21037 0.94969 0.94250 0.97597 1.19453 0.94442 0.96585 0.94065 1.21050 0.98810 0.99674 0.94362 1.20909 0.86184 0.97060 0.94301 1.44002 0.99912 1.54448 1.33149 1.19216 0.93884 1.02591 1.21995 0.91241 1.25004 0.99406 0.95289 1.00039 1.70007 1.22734 1.10436 1.52095 0.86189 0.82370 0.79605 0.78440 1.20261 1.21653 1.21536 1.19773 0.97795 0.92751 0.81752 0.90780 0.91608 0.89501 0.82725 0.77360 0.75655 0.90061 0.90831 0.86802 0.86624 0.86218 0.91882 0.91219 0.95522 0.92104 0.93554 0.94117 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.81 36.01 0.35 -0.60 16 2 C -0.09 -1.04 6.20 -104.43 -0.65 -1.68 16 3 C -0.23 -2.11 10.83 -39.89 -0.43 -2.54 16 4 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 5 O -0.16 -1.93 10.40 4.97 0.05 -1.88 16 6 C -0.08 -1.09 7.13 -36.80 -0.26 -1.36 16 7 C 0.60 8.53 7.79 -12.86 -0.10 8.43 16 8 O -0.52 -8.37 14.74 5.19 0.08 -8.30 16 9 N -0.71 -9.42 5.51 -62.81 -0.35 -9.77 16 10 C 0.17 2.22 5.10 -5.20 -0.03 2.19 16 11 C -0.13 -1.89 5.25 -104.47 -0.55 -2.44 16 12 C -0.12 -1.62 9.65 -39.69 -0.38 -2.00 16 13 C -0.13 -1.90 10.05 -39.67 -0.40 -2.30 16 14 C -0.11 -1.90 9.62 -39.46 -0.38 -2.28 16 15 C -0.08 -1.50 5.82 -104.56 -0.61 -2.11 16 16 C -0.04 -0.79 5.76 -104.60 -0.60 -1.40 16 17 C -0.10 -1.77 5.24 -28.04 -0.15 -1.91 16 18 C 0.14 2.94 6.52 -3.75 -0.02 2.91 16 19 N -0.59 -14.60 2.97 -173.93 -0.52 -15.12 16 20 C -0.25 -6.66 9.69 -15.06 -0.15 -6.81 16 21 H 0.07 1.84 7.88 -52.48 -0.41 1.42 16 22 C 0.00 0.02 4.99 -17.43 -0.09 -0.07 16 23 N -0.91 -25.63 11.10 55.49 0.62 -25.01 16 24 Si 0.90 21.34 29.58 -169.99 -5.03 16.32 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.20 4.81 4.85 -5.04 -0.02 4.78 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 1.01 6.46 -51.93 -0.34 0.67 16 32 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.21 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.41 5.34 8.22 -40.82 -0.34 5.01 16 35 H 0.08 1.13 6.34 -51.93 -0.33 0.80 16 36 H 0.07 0.92 7.99 -51.93 -0.41 0.51 16 37 H 0.11 1.32 8.02 -52.49 -0.42 0.90 16 38 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.12 1.91 8.05 -52.49 -0.42 1.49 16 40 H 0.06 0.99 6.26 -51.93 -0.32 0.66 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 44 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.10 2.51 6.34 -51.93 -0.33 2.18 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -30.92 378.73 -9.81 -40.72 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.26 Total: 6.18 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -4.11 Total: -8.84 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.25 Total: -49.90 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.13 Total: -10.17 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.92 -9.81 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051278955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.596 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds