Wall clock time and date at job start Sat Apr 11 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40359 * 126.64527 * 2 1 4 4 C 1.35133 * 107.11543 * 179.97438 * 3 2 1 5 5 O 1.33934 * 108.76847 * 359.97438 * 4 3 2 6 6 C 1.34919 * 109.37964 * 0.02562 * 5 4 3 7 7 C 1.46662 * 125.98185 * 180.26471 * 6 5 4 8 8 O 1.21697 * 119.99355 * 179.69023 * 7 6 5 9 9 N 1.34772 * 120.00419 * 359.68829 * 7 6 5 10 10 C 1.46499 * 120.00361 * 180.02562 * 9 7 6 11 11 C 1.50692 * 109.47308 * 179.97438 * 10 9 7 12 12 C 1.37954 * 119.71004 * 259.99954 * 11 10 9 13 13 C 1.38221 * 119.82671 * 180.02562 * 12 11 10 14 14 C 1.38010 * 119.72105 * 0.26362 * 13 12 11 15 15 C 1.38784 * 120.50026 * 359.83758 * 14 13 12 16 16 C 1.37725 * 119.84953 * 359.44393 * 15 14 13 17 17 C 1.50592 * 122.84906 * 181.02306 * 16 15 14 18 18 C 1.52791 * 110.92241 * 340.15325 * 17 16 15 19 19 N 1.47229 * 107.91213 * 47.32189 * 18 17 16 20 20 C 1.36937 * 121.32816 * 115.77614 * 19 18 17 21 21 H 1.08006 * 119.99745 * 335.42115 * 20 19 18 22 22 C 1.38806 * 119.99849 * 155.41950 * 20 19 18 23 23 N 1.31615 * 120.00474 * 344.26352 * 22 20 19 24 24 Si 1.86807 * 119.99845 * 164.26707 * 22 20 19 25 25 H 1.48498 * 109.47138 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47001 * 119.99666 * 24 22 20 27 27 H 1.48500 * 109.47172 * 239.99721 * 24 22 20 28 28 C 1.46685 * 117.34484 * 295.80370 * 19 18 17 29 29 H 1.09006 * 109.46826 * 270.00497 * 1 2 3 30 30 H 1.08995 * 109.46801 * 30.00176 * 1 2 3 31 31 H 1.09002 * 109.47050 * 150.00494 * 1 2 3 32 32 H 1.08001 * 126.44662 * 0.02562 * 3 2 1 33 33 H 1.08000 * 125.61936 * 180.02562 * 4 3 2 34 34 H 0.97005 * 119.99864 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.46862 * 300.00183 * 10 9 7 36 36 H 1.09001 * 109.46804 * 59.99576 * 10 9 7 37 37 H 1.08000 * 120.08870 * 0.10035 * 12 11 10 38 38 H 1.08004 * 120.14380 * 180.28069 * 13 12 11 39 39 H 1.07996 * 119.75097 * 179.86074 * 14 13 12 40 40 H 1.09001 * 109.33429 * 219.67154 * 17 16 15 41 41 H 1.08993 * 108.95653 * 100.39422 * 17 16 15 42 42 H 1.09004 * 109.77321 * 287.71766 * 18 17 16 43 43 H 1.09002 * 109.81767 * 166.95173 * 18 17 16 44 44 H 0.97002 * 120.00390 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.43011 * 284.32477 * 28 19 18 46 46 H 1.08998 * 109.43153 * 164.45940 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 0.0006 5 8 3.6006 -0.6648 0.0015 6 6 2.3220 -1.0955 0.0010 7 6 1.8843 -2.4953 0.0071 8 8 0.6968 -2.7614 0.0116 9 7 2.7971 -3.4869 0.0077 10 6 2.3599 -4.8851 0.0133 11 6 3.5659 -5.7886 0.0123 12 6 3.9846 -6.3686 -1.1673 13 6 5.0902 -7.1981 -1.1710 14 6 5.7646 -7.4446 0.0076 15 6 5.3429 -6.8633 1.1953 16 6 4.2504 -6.0248 1.1980 17 6 3.7487 -5.3409 2.4424 18 6 4.2561 -6.0501 3.6970 19 7 5.6998 -6.2863 3.5311 20 6 6.6180 -5.6894 4.3532 21 1 6.3723 -4.7661 4.8568 22 6 7.8645 -6.2711 4.5393 23 7 8.0642 -7.5248 4.1919 24 14 9.2586 -5.2746 5.2829 25 1 8.7797 -3.9016 5.5843 26 1 9.7186 -5.9252 6.5360 27 1 10.3860 -5.2045 4.3188 28 6 6.1155 -7.1859 2.4496 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 2.0307 2.1595 0.0004 33 1 4.5047 1.2916 0.0011 34 1 3.7436 -3.2747 0.0045 35 1 1.7634 -5.0756 0.9056 36 1 1.7585 -5.0812 -0.8744 37 1 3.4507 -6.1740 -2.0857 38 1 5.4252 -7.6513 -2.0924 39 1 6.6271 -8.0945 0.0057 40 1 2.6587 -5.3472 2.4431 41 1 4.1012 -4.3096 2.4462 42 1 3.7382 -7.0016 3.8177 43 1 4.0832 -5.4228 4.5715 44 1 8.9352 -7.9314 4.3223 45 1 5.9196 -8.2178 2.7410 46 1 7.1816 -7.0588 2.2618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051278955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:23 Heat of formation + Delta-G solvation = 5.247322 kcal Electronic energy + Delta-G solvation = -29208.049668 eV Core-core repulsion = 25256.790776 eV Total energy + Delta-G solvation = -3951.258893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.66895 -41.22818 -40.24236 -37.68383 -36.31181 -35.01737 -34.47232 -33.22718 -31.79086 -31.44627 -30.35361 -28.77076 -27.44906 -26.89944 -24.83090 -23.85932 -23.72606 -22.28077 -21.75949 -20.95337 -20.61287 -19.20289 -18.66468 -17.49123 -17.40387 -17.15992 -16.84000 -16.64672 -16.51736 -15.95728 -15.67657 -15.40349 -15.38921 -14.76979 -14.62625 -14.37382 -14.14349 -14.07073 -13.93607 -13.87517 -13.58683 -13.50932 -13.38433 -13.26793 -12.83393 -12.78042 -12.77342 -12.54552 -12.39059 -12.15516 -11.86489 -11.63759 -11.38043 -11.29001 -10.70464 -10.66793 -10.27684 -9.58801 -9.55839 -9.33652 -8.79479 -7.92406 -5.35187 0.03125 0.32333 0.55190 1.41311 1.44641 1.46182 1.56860 1.75327 2.08225 2.26689 2.47934 2.92681 3.24627 3.59688 3.62613 3.77546 3.83481 3.91810 3.96731 4.00901 4.13856 4.32361 4.37083 4.52898 4.54174 4.57937 4.63906 4.71624 4.74322 4.78075 4.79467 4.81541 4.97480 5.10258 5.11982 5.13223 5.13816 5.18366 5.26033 5.37325 5.43448 5.48419 5.57300 5.61836 5.68636 5.86990 5.93755 6.15108 6.30057 6.40023 6.96978 7.08717 7.77233 8.32446 9.16505 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010734 B = 0.003329 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.948148 B = 8408.534307 C = 9940.903692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.094 4.094 3 C -0.234 4.234 4 C 0.009 3.991 5 O -0.176 6.176 6 C -0.121 4.121 7 C 0.602 3.398 8 O -0.550 6.550 9 N -0.705 5.705 10 C 0.171 3.829 11 C -0.117 4.117 12 C -0.103 4.103 13 C -0.120 4.120 14 C -0.122 4.122 15 C -0.107 4.107 16 C -0.058 4.058 17 C -0.086 4.086 18 C 0.138 3.862 19 N -0.611 5.611 20 C -0.260 4.260 21 H 0.070 0.930 22 C -0.051 4.051 23 N -0.938 5.938 24 Si 0.969 3.031 25 H -0.267 1.267 26 H -0.291 1.291 27 H -0.289 1.289 28 C 0.221 3.779 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.184 0.816 33 H 0.250 0.750 34 H 0.409 0.591 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.024 0.976 43 H 0.061 0.939 44 H 0.251 0.749 45 H 0.006 0.994 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.096 13.836 -13.954 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.253 4.253 4 C -0.061 4.061 5 O -0.072 6.072 6 C -0.172 4.172 7 C 0.390 3.610 8 O -0.431 6.431 9 N -0.355 5.355 10 C 0.049 3.951 11 C -0.118 4.118 12 C -0.121 4.121 13 C -0.138 4.138 14 C -0.141 4.141 15 C -0.109 4.109 16 C -0.059 4.059 17 C -0.124 4.124 18 C 0.012 3.988 19 N -0.334 5.334 20 C -0.390 4.390 21 H 0.088 0.912 22 C -0.246 4.246 23 N -0.584 5.584 24 Si 0.797 3.203 25 H -0.191 1.191 26 H -0.218 1.218 27 H -0.216 1.216 28 C 0.095 3.905 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.201 0.799 33 H 0.266 0.734 34 H 0.245 0.755 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.137 0.863 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.024 0.976 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.560 13.325 -13.892 22.454 hybrid contribution 1.582 0.079 0.856 1.801 sum -9.977 13.404 -13.036 21.193 Atomic orbital electron populations 1.20432 0.87681 1.03755 1.03069 1.21035 0.98384 0.91580 0.98675 1.22100 0.92113 1.00843 1.10220 1.25305 1.01556 0.79701 0.99510 1.84086 1.27865 1.24308 1.70970 1.21759 0.82413 0.94621 1.18429 1.16681 0.85412 0.82469 0.76469 1.90812 1.16549 1.83009 1.52733 1.45961 1.10173 1.05767 1.73591 1.20191 0.93631 0.77911 1.03407 1.19826 0.97815 1.00884 0.93242 1.21194 0.96751 0.96762 0.97420 1.21283 0.95747 0.98894 0.97889 1.21296 1.00382 0.99914 0.92472 1.20677 0.96341 0.97239 0.96628 1.19465 0.94517 0.96748 0.95174 1.20854 0.99918 0.98731 0.92911 1.21056 0.84280 0.97285 0.96167 1.44251 1.01281 1.54462 1.33422 1.19527 0.94750 1.02683 1.22004 0.91208 1.25771 1.01567 0.96203 1.01064 1.70173 1.22873 1.11879 1.53482 0.85181 0.79241 0.78588 0.77301 1.19102 1.21783 1.21577 1.19331 0.96585 0.90974 0.83570 0.90651 0.89163 0.91306 0.79897 0.73417 0.75539 0.90609 0.89230 0.83211 0.83112 0.86304 0.89655 0.91740 0.95824 0.92004 0.93975 0.97585 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 9.81 71.24 0.70 -1.07 16 2 C -0.09 -2.02 6.20 -19.74 -0.12 -2.15 16 3 C -0.23 -3.64 10.83 22.07 0.24 -3.40 16 4 C 0.01 0.13 12.08 67.10 0.81 0.94 16 5 O -0.18 -3.95 10.40 -5.12 -0.05 -4.00 16 6 C -0.12 -3.03 7.13 24.07 0.17 -2.86 16 7 C 0.60 16.61 7.79 86.44 0.67 17.28 16 8 O -0.55 -17.34 14.74 -4.34 -0.06 -17.40 16 9 N -0.71 -17.83 5.51 -470.85 -2.60 -20.43 16 10 C 0.17 4.23 5.10 85.63 0.44 4.66 16 11 C -0.12 -3.26 5.25 -19.77 -0.10 -3.36 16 12 C -0.10 -2.49 9.65 22.20 0.21 -2.27 16 13 C -0.12 -3.11 10.05 22.21 0.22 -2.89 16 14 C -0.12 -4.10 9.62 22.35 0.22 -3.89 16 15 C -0.11 -4.31 5.82 -19.82 -0.12 -4.42 16 16 C -0.06 -2.05 5.76 -19.85 -0.11 -2.17 16 17 C -0.09 -3.02 5.24 29.74 0.16 -2.87 16 18 C 0.14 5.86 6.52 86.17 0.56 6.43 16 19 N -0.61 -31.47 2.97 -704.20 -2.09 -33.57 16 20 C -0.26 -14.45 9.69 84.03 0.81 -13.64 16 21 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 22 C -0.05 -2.86 4.99 84.86 0.42 -2.43 16 23 N -0.94 -55.44 11.10 21.65 0.24 -55.19 16 24 Si 0.97 44.91 29.58 68.60 2.03 46.94 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 27 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 28 C 0.22 11.04 4.85 85.63 0.42 11.46 16 29 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.57 6.46 -2.39 -0.02 1.56 16 32 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.25 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.41 10.23 8.22 -92.70 -0.76 9.47 16 35 H 0.08 1.98 6.34 -2.39 -0.02 1.97 16 36 H 0.09 1.97 7.99 -2.39 -0.02 1.95 16 37 H 0.15 2.65 8.02 -2.91 -0.02 2.62 16 38 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 39 H 0.12 3.90 8.05 -2.91 -0.02 3.88 16 40 H 0.09 2.60 6.26 -2.39 -0.01 2.59 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.06 2.55 7.96 -2.39 -0.02 2.53 16 44 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 45 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.06 3.45 6.34 -2.39 -0.02 3.43 16 Total: -1.00 -70.70 378.73 3.31 -67.39 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.25 Total: 22.93 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 5.60 Total: -6.66 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -4.45 Total: -109.19 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.12 Total: -21.40 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -70.70 3.31 -67.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051278955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.634 kcal (2) G-P(sol) polarization free energy of solvation -70.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds