Wall clock time and date at job start Sat Apr 11 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39722 * 119.99667 * 93.49917 * 3 2 1 5 5 C 1.37595 * 120.00124 * 179.97438 * 4 3 2 6 6 C 1.39748 * 119.99885 * 359.97438 * 5 4 3 7 7 C 1.47687 * 120.00161 * 180.02562 * 6 5 4 8 8 O 1.21576 * 120.00186 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99829 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00280 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47376 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.34253 * 304.33295 * 11 10 9 13 13 C 1.55014 * 110.30018 * 182.21161 * 11 10 9 14 14 C 1.55484 * 101.04288 * 205.04509 * 13 11 10 15 15 C 1.53659 * 101.97023 * 33.48976 * 14 13 11 16 16 C 1.52694 * 115.27094 * 206.89751 * 15 14 13 17 17 N 1.47206 * 87.79847 * 219.25251 * 16 15 14 18 18 C 1.36942 * 135.97483 * 206.43081 * 17 16 15 19 19 H 1.07998 * 119.99662 * 6.48704 * 18 17 16 20 20 C 1.38810 * 119.99956 * 186.48113 * 18 17 16 21 21 N 1.31624 * 120.00077 * 6.42088 * 20 18 17 22 22 Si 1.86795 * 119.99801 * 186.41661 * 20 18 17 23 23 H 1.48495 * 109.47273 * 265.02243 * 22 20 18 24 24 H 1.48505 * 109.47005 * 145.02269 * 22 20 18 25 25 H 1.48501 * 109.47407 * 25.02586 * 22 20 18 26 26 C 1.47214 * 88.05471 * 26.69103 * 17 16 15 27 27 O 1.42398 * 108.52836 * 339.12856 * 15 14 13 28 28 C 1.39741 * 119.99344 * 0.27730 * 6 5 4 29 29 C 1.37602 * 119.99310 * 359.46352 * 28 6 5 30 30 H 4.51948 * 14.06479 * 0.02562 * 4 2 1 31 31 H 1.07994 * 119.99384 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.99879 * 179.97438 * 5 4 3 33 33 H 0.97005 * 120.00127 * 0.02562 * 9 7 6 34 34 H 1.09004 * 109.46894 * 59.99607 * 10 9 7 35 35 H 1.09001 * 109.46755 * 300.00380 * 10 9 7 36 36 H 1.08996 * 111.10564 * 322.99276 * 13 11 10 37 37 H 1.09005 * 111.10446 * 87.06291 * 13 11 10 38 38 H 1.08998 * 110.93713 * 275.31886 * 14 13 11 39 39 H 1.09000 * 110.93180 * 151.65667 * 14 13 11 40 40 H 1.09000 * 113.49973 * 104.51257 * 16 15 14 41 41 H 1.09003 * 113.55269 * 333.99358 * 16 15 14 42 42 H 0.97001 * 119.99419 * 179.97438 * 21 20 18 43 43 H 1.09000 * 113.49681 * 88.03731 * 26 17 16 44 44 H 1.08991 * 113.49728 * 218.58097 * 26 17 16 45 45 H 1.07995 * 120.00602 * 179.72601 * 28 6 5 46 46 H 1.08006 * 119.99968 * 180.23356 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3045 0.0748 -1.2078 5 6 4.6804 0.0760 -1.2079 6 6 5.3793 0.0035 0.0001 7 6 6.8561 0.0053 0.0002 8 8 7.4640 0.0703 -1.0507 9 7 7.5301 -0.0641 1.1653 10 6 8.9951 -0.0617 1.1654 11 6 9.5051 -0.1486 2.6053 12 1 9.0866 0.6597 3.2050 13 6 11.0539 -0.0915 2.6316 14 6 11.3565 -0.8269 3.9677 15 6 10.2234 -1.8632 4.0247 16 6 9.8213 -2.3129 5.4274 17 7 9.6753 -3.6746 4.8875 18 6 8.9438 -4.7874 5.2070 19 1 8.1963 -4.7371 5.9848 20 6 9.1632 -5.9797 4.5310 21 7 10.1569 -6.0769 3.6733 22 14 8.0481 -7.4464 4.8385 23 1 8.6603 -8.3268 5.8658 24 1 7.8718 -8.2077 3.5757 25 1 6.7257 -6.9709 5.3185 26 6 10.6652 -3.3183 3.8577 27 8 9.1652 -1.4237 3.1792 28 6 4.6805 -0.0760 1.2077 29 6 3.3045 -0.0717 1.2078 30 1 -1.0500 0.0005 0.0001 31 1 2.7643 0.1321 -2.1412 32 1 5.2203 0.1329 -2.1416 33 1 7.0451 -0.1156 2.0038 34 1 9.3569 0.8582 0.7062 35 1 9.3598 -0.9185 0.5988 36 1 11.4809 -0.6268 1.7835 37 1 11.4083 0.9389 2.6610 38 1 11.2988 -0.1401 4.8121 39 1 12.3299 -1.3160 3.9313 40 1 8.8824 -1.8785 5.7707 41 1 10.6221 -2.2198 6.1610 42 1 10.3103 -6.9103 3.2013 43 1 11.6955 -3.4976 4.1648 44 1 10.4388 -3.7329 2.8755 45 1 5.2204 -0.1365 2.1411 46 1 2.7644 -0.1294 2.1413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053635740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:36 Heat of formation + Delta-G solvation = 65.018448 kcal Electronic energy + Delta-G solvation = -28355.272497 eV Core-core repulsion = 24406.605475 eV Total energy + Delta-G solvation = -3948.667022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.41365 -39.85742 -38.57357 -36.59765 -34.57830 -34.09582 -32.14888 -31.93837 -31.33887 -30.82623 -29.15588 -26.98016 -24.91309 -24.74840 -23.64166 -22.77583 -21.51795 -21.40980 -20.63697 -19.27813 -19.05213 -18.05941 -16.86256 -16.47501 -16.21959 -15.93769 -15.27338 -15.08438 -15.01060 -14.87516 -14.41877 -14.12098 -13.88967 -13.69162 -13.60296 -13.38644 -13.26120 -13.02095 -12.48042 -12.44638 -12.32233 -11.81932 -11.69474 -11.46257 -11.39658 -11.25133 -11.10734 -11.02403 -10.80184 -10.78882 -10.43676 -10.12275 -10.00168 -9.76225 -9.47247 -9.33661 -9.14916 -8.80696 -8.78605 -8.66154 -6.85446 -5.74882 -3.04727 0.26643 1.08053 2.31160 2.38398 3.05046 3.14284 3.41491 3.46508 3.49156 3.75794 3.87304 3.94727 4.47627 4.52790 4.57396 4.65161 4.68963 4.80750 4.99229 5.00290 5.15027 5.19580 5.21459 5.26144 5.39337 5.48465 5.54956 5.58889 5.63913 5.68732 5.71980 5.87486 5.98974 6.03309 6.07082 6.09462 6.11377 6.23823 6.36664 6.39997 6.51815 6.55069 6.65869 6.95913 7.15732 7.19444 7.45038 7.53035 7.75634 8.00383 8.14489 9.06503 9.73607 10.67176 11.44275 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008655 B = 0.002974 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3234.407984 B = 9411.480973 C =11616.873803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.153 4.153 3 C 0.030 3.970 4 C -0.105 4.105 5 C -0.059 4.059 6 C -0.122 4.122 7 C 0.557 3.443 8 O -0.541 6.541 9 N -0.714 5.714 10 C 0.124 3.876 11 C 0.063 3.937 12 H 0.073 0.927 13 C -0.145 4.145 14 C -0.136 4.136 15 C 0.056 3.944 16 C 0.111 3.889 17 N -0.602 5.602 18 C -0.215 4.215 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.161 3.839 27 O -0.332 6.332 28 C -0.081 4.081 29 C -0.102 4.102 30 H 0.225 0.775 31 H 0.133 0.867 32 H 0.142 0.858 33 H 0.405 0.595 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.253 0.747 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.135 0.865 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.525 18.414 -5.771 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.153 4.153 3 C 0.029 3.971 4 C -0.123 4.123 5 C -0.078 4.078 6 C -0.125 4.125 7 C 0.344 3.656 8 O -0.419 6.419 9 N -0.366 5.366 10 C 0.000 4.000 11 C 0.004 3.996 12 H 0.090 0.910 13 C -0.183 4.183 14 C -0.174 4.174 15 C 0.015 3.985 16 C -0.016 4.016 17 N -0.328 5.328 18 C -0.342 4.342 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.035 3.965 27 O -0.251 6.251 28 C -0.100 4.100 29 C -0.120 4.120 30 H 0.242 0.758 31 H 0.151 0.849 32 H 0.160 0.840 33 H 0.241 0.759 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.153 0.847 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.361 17.969 -6.567 21.299 hybrid contribution -0.708 -0.936 0.756 1.396 sum -10.068 17.034 -5.810 20.622 Atomic orbital electron populations 1.24929 0.95786 0.98721 0.99100 1.20024 0.92023 1.01722 1.01528 1.16179 0.86712 1.00257 0.93916 1.21165 0.93756 1.00141 0.97249 1.21194 0.93366 0.95212 0.98018 1.20105 0.93149 1.04781 0.94452 1.18178 0.87007 0.76564 0.83858 1.90773 1.69844 1.50115 1.31180 1.45816 1.07660 1.74180 1.08907 1.21596 0.79268 1.02903 0.96213 1.23259 0.95099 0.88367 0.92859 0.90954 1.23201 0.94429 1.01442 0.99210 1.22877 0.99955 0.97772 0.96825 1.23427 0.86287 0.95699 0.93068 1.22689 0.98239 0.87534 0.93096 1.45523 1.46505 1.09057 1.31683 1.18893 1.11943 0.86185 1.17204 0.90206 1.24797 0.98361 0.97378 0.99865 1.69843 1.30450 1.25984 1.30357 0.86113 0.80039 0.82568 0.77123 1.21665 1.21587 1.20527 1.22294 0.92344 0.86384 0.95517 1.88426 1.40592 1.33572 1.62503 1.21301 0.94146 0.96993 0.97532 1.21147 0.93791 0.99643 0.97375 0.75780 0.84897 0.84000 0.75907 0.90249 0.90243 0.89912 0.90194 0.90762 0.89756 0.93802 0.94109 0.93681 0.94298 0.91662 0.84701 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 19.25 29.55 0.57 -0.73 16 2 C -0.15 -1.52 13.23 -38.84 -0.51 -2.03 16 3 C 0.03 0.31 5.73 -106.86 -0.61 -0.30 16 4 C -0.11 -1.04 9.73 -39.26 -0.38 -1.43 16 5 C -0.06 -0.66 9.57 -39.25 -0.38 -1.04 16 6 C -0.12 -1.48 5.88 -104.91 -0.62 -2.10 16 7 C 0.56 7.93 7.77 -12.40 -0.10 7.83 16 8 O -0.54 -9.29 16.33 5.30 0.09 -9.21 16 9 N -0.71 -9.23 5.49 -61.30 -0.34 -9.57 16 10 C 0.12 1.60 5.38 -4.04 -0.02 1.58 16 11 C 0.06 0.81 3.49 -25.67 -0.09 0.72 16 12 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.14 -1.66 6.58 -24.35 -0.16 -1.82 16 14 C -0.14 -1.83 6.39 -25.07 -0.16 -1.99 16 15 C 0.06 1.04 1.75 -90.45 -0.16 0.88 16 16 C 0.11 2.29 8.20 -8.08 -0.07 2.23 16 17 N -0.60 -15.87 3.77 -184.62 -0.70 -16.56 16 18 C -0.21 -6.20 10.73 -15.06 -0.16 -6.36 16 19 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 21 N -0.92 -28.03 11.82 55.49 0.66 -27.37 16 22 Si 0.91 22.68 29.56 -169.99 -5.02 17.65 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 C 0.16 3.82 6.70 -7.92 -0.05 3.77 16 27 O -0.33 -6.05 10.84 -35.23 -0.38 -6.43 16 28 C -0.08 -0.85 9.52 -39.25 -0.37 -1.22 16 29 C -0.10 -1.01 9.73 -39.26 -0.38 -1.39 16 30 H 0.23 0.82 7.80 -54.09 -0.42 0.40 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.14 1.53 7.64 -52.48 -0.40 1.13 16 33 H 0.40 4.62 6.49 -40.82 -0.26 4.36 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.08 0.97 8.05 -51.93 -0.42 0.56 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 39 H 0.08 1.11 7.81 -51.93 -0.41 0.70 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 42 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.04 0.93 7.95 -51.93 -0.41 0.51 16 44 H 0.07 1.76 7.60 -51.93 -0.39 1.37 16 45 H 0.14 1.18 6.38 -52.49 -0.34 0.85 16 46 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 393.21 15.07 5.93 5.93 Total: -1.00 -36.00 393.21 -9.93 -45.93 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.40 Total: 3.34 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -3.75 Total: -3.70 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.38 Total: -53.50 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.30 Total: -15.64 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.00 -9.93 -45.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053635740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.944 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds