Wall clock time and date at job start Sat Apr 11 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34178 * 127.02520 * 2 1 4 4 O 1.34210 * 109.12817 * 180.26456 * 3 2 1 5 5 C 1.33651 * 110.90869 * 359.74100 * 4 3 2 6 6 C 1.36418 * 108.39624 * 0.02562 * 5 4 3 7 7 C 1.47374 * 127.19065 * 179.97438 * 6 5 4 8 8 O 1.21613 * 119.99796 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00347 * 0.02562 * 7 6 5 10 10 C 1.46498 * 119.99956 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46894 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.77444 * 64.24702 * 11 10 9 13 13 C 1.52790 * 109.77660 * 184.99606 * 11 10 9 14 14 C 1.50598 * 110.86379 * 167.05268 * 13 11 10 15 15 C 1.38978 * 117.61495 * 160.40868 * 14 13 11 16 16 C 1.37901 * 120.58656 * 179.54048 * 15 14 13 17 17 C 1.38261 * 119.82747 * 359.95852 * 16 15 14 18 18 C 1.37960 * 119.71856 * 0.24177 * 17 16 15 19 19 C 1.37672 * 122.87020 * 340.30958 * 14 13 11 20 20 C 1.50811 * 122.35876 * 0.75527 * 19 14 13 21 21 N 1.46688 * 109.66674 * 348.91175 * 20 19 14 22 22 C 1.36933 * 121.34477 * 224.34921 * 21 20 19 23 23 H 1.08005 * 119.99758 * 152.09365 * 22 21 20 24 24 C 1.38812 * 120.00592 * 332.09714 * 22 21 20 25 25 N 1.31619 * 119.99623 * 349.00256 * 24 22 21 26 26 Si 1.86796 * 120.00363 * 169.00890 * 24 22 21 27 27 H 1.48507 * 109.46968 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47371 * 119.99726 * 26 24 22 29 29 H 1.48494 * 109.47291 * 239.99868 * 26 24 22 30 30 H 1.09003 * 109.47157 * 270.13775 * 1 2 3 31 31 H 1.08994 * 109.47452 * 30.13799 * 1 2 3 32 32 H 1.09003 * 109.47179 * 150.14556 * 1 2 3 33 33 H 1.08006 * 125.43761 * 0.02562 * 3 2 1 34 34 H 1.08004 * 125.80489 * 179.97438 * 5 4 3 35 35 H 0.96998 * 120.00121 * 359.97438 * 9 7 6 36 36 H 1.08995 * 109.47556 * 59.99665 * 10 9 7 37 37 H 1.09008 * 109.47203 * 299.99317 * 10 9 7 38 38 H 1.09004 * 109.19721 * 287.41366 * 13 11 10 39 39 H 1.09000 * 109.19922 * 46.69647 * 13 11 10 40 40 H 1.08003 * 119.70436 * 359.56096 * 15 14 13 41 41 H 1.08000 * 120.08470 * 179.97438 * 16 15 14 42 42 H 1.08004 * 120.14285 * 180.25656 * 17 16 15 43 43 H 1.07990 * 119.74839 * 179.97438 * 18 17 16 44 44 H 1.08994 * 109.44044 * 228.84854 * 20 19 14 45 45 H 1.09004 * 109.43718 * 108.97325 * 20 19 14 46 46 H 0.97001 * 119.99798 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5921 0.6588 -0.0059 5 6 3.6623 -0.6758 -0.0042 6 6 2.3923 -1.1738 0.0024 7 6 1.9914 -2.5920 0.0059 8 8 0.8126 -2.8906 0.0114 9 7 2.9313 -3.5580 0.0030 10 6 2.5328 -4.9677 0.0058 11 6 3.7822 -5.8509 0.0009 12 1 4.3447 -5.6991 0.9221 13 6 3.3770 -7.3190 -0.1214 14 6 4.5701 -8.1796 -0.4437 15 6 4.4716 -9.5411 -0.1829 16 6 5.5238 -10.3872 -0.4633 17 6 6.6880 -9.8793 -1.0095 18 6 6.7903 -8.5275 -1.2656 19 6 5.7331 -7.6741 -0.9797 20 6 5.9147 -6.2063 -1.2745 21 7 4.6255 -5.5162 -1.1586 22 6 4.2226 -4.5982 -2.0914 23 1 3.1698 -4.4372 -2.2709 24 6 5.1671 -3.8746 -2.8063 25 7 6.4322 -3.9065 -2.4447 26 14 4.6426 -2.8554 -4.2812 27 1 3.1764 -2.9866 -4.4774 28 1 4.9842 -1.4297 -4.0445 29 1 5.3500 -3.3391 -5.4939 30 1 -0.3633 0.0025 1.0277 31 1 -0.3634 0.8887 -0.5159 32 1 -0.3634 -0.8913 -0.5116 33 1 1.9895 2.1011 0.0004 34 1 4.5702 -1.2608 -0.0083 35 1 3.8716 -3.3198 -0.0018 36 1 1.9358 -5.1784 -0.8815 37 1 1.9431 -5.1768 0.8985 38 1 2.9402 -7.6499 0.8209 39 1 2.6363 -7.4216 -0.9144 40 1 3.5627 -9.9401 0.2428 41 1 5.4386 -11.4439 -0.2570 42 1 7.5137 -10.5379 -1.2349 43 1 7.6995 -8.1302 -1.6918 44 1 6.3017 -6.0846 -2.2861 45 1 6.6207 -5.7781 -0.5628 46 1 7.0923 -3.4011 -2.9445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054049318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:56 Heat of formation + Delta-G solvation = 23.853628 kcal Electronic energy + Delta-G solvation = -29834.354467 eV Core-core repulsion = 25883.902404 eV Total energy + Delta-G solvation = -3950.452063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29721 -39.48149 -38.70601 -36.55404 -33.82996 -33.51931 -32.95142 -31.47726 -30.82832 -29.84916 -28.84138 -27.03087 -25.71757 -25.53986 -23.03740 -22.74152 -21.57095 -21.08500 -20.14159 -19.61435 -19.04051 -17.74964 -16.39173 -16.25939 -15.95005 -15.58510 -15.34202 -15.10835 -14.59073 -14.48355 -14.31505 -14.19454 -13.80098 -13.49553 -13.15365 -13.02229 -12.88304 -12.74143 -12.62369 -12.46250 -12.29555 -12.14979 -11.70431 -11.59033 -11.30370 -11.13624 -10.94747 -10.87610 -10.74346 -10.52442 -10.22656 -10.02876 -9.74911 -9.40290 -9.26618 -8.81886 -8.49023 -8.29490 -8.23430 -7.87861 -6.86796 -5.96676 -3.40839 1.70308 1.84538 1.92142 2.25217 3.17896 3.27454 3.37538 3.41516 3.75467 3.92652 4.26605 4.34435 4.80245 4.93505 5.11179 5.18341 5.24768 5.27348 5.34298 5.44829 5.54657 5.57623 5.68663 5.70098 5.84266 5.87121 5.91769 5.98992 6.03014 6.07154 6.13801 6.17118 6.27879 6.29355 6.35020 6.53029 6.60201 6.65803 6.78470 6.92280 6.93352 7.09985 7.11295 7.16380 7.19464 7.47284 7.61081 7.69554 8.20467 8.25090 8.85090 9.03223 9.62388 10.20718 11.11973 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.003690 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.181440 B = 7585.495920 C = 8768.808113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.135 4.135 3 C -0.059 4.059 4 O -0.175 6.175 5 C 0.030 3.970 6 C -0.229 4.229 7 C 0.581 3.419 8 O -0.559 6.559 9 N -0.690 5.690 10 C 0.138 3.862 11 C 0.157 3.843 12 H 0.042 0.958 13 C -0.090 4.090 14 C -0.067 4.067 15 C -0.128 4.128 16 C -0.140 4.140 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.078 4.078 20 C 0.207 3.793 21 N -0.588 5.588 22 C -0.244 4.244 23 H 0.073 0.927 24 C 0.009 3.991 25 N -0.905 5.905 26 Si 0.893 3.107 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.288 1.288 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.202 0.798 34 H 0.215 0.785 35 H 0.412 0.588 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.042 0.958 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 0.148 6.410 7.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C -0.124 4.124 4 O -0.071 6.071 5 C -0.040 4.040 6 C -0.233 4.233 7 C 0.369 3.631 8 O -0.440 6.440 9 N -0.340 5.340 10 C 0.014 3.986 11 C 0.050 3.950 12 H 0.060 0.940 13 C -0.130 4.130 14 C -0.068 4.068 15 C -0.146 4.146 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.142 4.142 19 C -0.079 4.079 20 C 0.082 3.918 21 N -0.312 5.312 22 C -0.373 4.373 23 H 0.090 0.910 24 C -0.190 4.190 25 N -0.550 5.550 26 Si 0.723 3.277 27 H -0.202 1.202 28 H -0.214 1.214 29 H -0.215 1.215 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.219 0.781 34 H 0.232 0.768 35 H 0.249 0.751 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.115 0.885 45 H 0.060 0.940 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.406 0.236 6.319 7.182 hybrid contribution 0.336 0.319 -1.034 1.133 sum -3.070 0.555 5.284 6.136 Atomic orbital electron populations 1.20190 0.88679 1.02963 1.02158 1.21396 0.97081 0.90657 1.04540 1.23601 0.80090 0.99437 1.09319 1.83769 1.29396 1.22724 1.71173 1.24657 0.99434 0.80639 0.99277 1.21479 0.93065 0.94612 1.14172 1.17181 0.85562 0.83727 0.76660 1.90689 1.17576 1.83499 1.52202 1.45720 1.10198 1.05569 1.72545 1.21247 0.96370 0.79965 1.01015 1.20724 0.91266 0.91289 0.91689 0.93987 1.20880 0.95438 0.95928 1.00745 1.19478 0.95290 0.93275 0.98723 1.21125 0.98460 0.93413 1.01573 1.20848 0.94286 0.98891 1.01801 1.20954 0.97710 0.95443 1.00753 1.21117 0.98882 0.93221 1.00977 1.21012 0.92402 0.99351 0.95153 1.19787 0.87628 0.82195 1.02172 1.44049 1.18072 1.46057 1.23012 1.19179 0.92303 1.12679 1.13114 0.90977 1.24996 0.95835 0.98172 1.00013 1.69965 1.00667 1.44177 1.40171 0.86344 0.78348 0.79953 0.83095 1.20209 1.21443 1.21506 0.91541 0.92170 0.89894 0.78091 0.76829 0.75063 0.91394 0.92318 0.91827 0.90773 0.87080 0.87129 0.87002 0.86480 0.88509 0.94007 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.00 36.00 0.36 -0.76 16 2 C -0.13 -2.07 6.37 -102.50 -0.65 -2.72 16 3 C -0.06 -0.77 11.96 29.30 0.35 -0.42 16 4 O -0.18 -2.60 10.52 7.67 0.08 -2.52 16 5 C 0.03 0.47 11.61 30.08 0.35 0.82 16 6 C -0.23 -3.98 6.31 -103.28 -0.65 -4.64 16 7 C 0.58 11.26 7.81 -12.54 -0.10 11.16 16 8 O -0.56 -12.02 15.41 5.27 0.08 -11.94 16 9 N -0.69 -12.81 4.08 -61.40 -0.25 -13.06 16 10 C 0.14 2.49 4.43 -4.04 -0.02 2.47 16 11 C 0.16 2.88 2.99 -67.64 -0.20 2.67 16 12 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.09 -1.50 5.21 -28.04 -0.15 -1.65 16 14 C -0.07 -1.19 5.76 -104.60 -0.60 -1.79 16 15 C -0.13 -1.97 9.59 -39.43 -0.38 -2.35 16 16 C -0.14 -2.03 10.04 -39.70 -0.40 -2.43 16 17 C -0.13 -1.95 10.05 -39.67 -0.40 -2.35 16 18 C -0.12 -2.11 9.62 -39.46 -0.38 -2.49 16 19 C -0.08 -1.48 5.82 -104.55 -0.61 -2.09 16 20 C 0.21 4.48 4.80 -5.04 -0.02 4.45 16 21 N -0.59 -12.70 2.86 -166.38 -0.48 -13.18 16 22 C -0.24 -5.79 7.09 -15.06 -0.11 -5.90 16 23 H 0.07 1.80 6.18 -52.48 -0.32 1.48 16 24 C 0.01 0.21 5.08 -17.43 -0.09 0.12 16 25 N -0.91 -22.95 11.06 55.49 0.61 -22.34 16 26 Si 0.89 20.72 29.57 -169.99 -5.03 15.70 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.31 6.92 -51.93 -0.36 0.95 16 33 H 0.20 1.76 8.06 -52.48 -0.42 1.33 16 34 H 0.22 3.06 7.47 -52.48 -0.39 2.67 16 35 H 0.41 7.74 6.45 -40.82 -0.26 7.48 16 36 H 0.07 1.34 7.25 -51.93 -0.38 0.97 16 37 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 38 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 39 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 40 H 0.11 1.46 8.05 -52.48 -0.42 1.04 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 43 H 0.12 1.88 8.05 -52.49 -0.42 1.45 16 44 H 0.10 2.36 6.45 -51.93 -0.33 2.03 16 45 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -28.55 375.56 -9.26 -37.82 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.25 Total: 11.73 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -3.70 Total: -7.87 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.11 Total: -48.58 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.16 Total: -14.46 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.55 -9.26 -37.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054049318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.672 kcal (2) G-P(sol) polarization free energy of solvation -28.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds