Wall clock time and date at job start Sat Apr 11 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34178 * 127.02520 * 2 1 4 4 O 1.34210 * 109.12817 * 180.26456 * 3 2 1 5 5 C 1.33651 * 110.90869 * 359.74100 * 4 3 2 6 6 C 1.36418 * 108.39624 * 0.02562 * 5 4 3 7 7 C 1.47374 * 127.19065 * 179.97438 * 6 5 4 8 8 O 1.21613 * 119.99796 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00347 * 0.02562 * 7 6 5 10 10 C 1.46498 * 119.99956 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46894 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.77444 * 64.24702 * 11 10 9 13 13 C 1.52790 * 109.77660 * 184.99606 * 11 10 9 14 14 C 1.50598 * 110.86379 * 167.05268 * 13 11 10 15 15 C 1.38978 * 117.61495 * 160.40868 * 14 13 11 16 16 C 1.37901 * 120.58656 * 179.54048 * 15 14 13 17 17 C 1.38261 * 119.82747 * 359.95852 * 16 15 14 18 18 C 1.37960 * 119.71856 * 0.24177 * 17 16 15 19 19 C 1.37672 * 122.87020 * 340.30958 * 14 13 11 20 20 C 1.50811 * 122.35876 * 0.75527 * 19 14 13 21 21 N 1.46688 * 109.66674 * 348.91175 * 20 19 14 22 22 C 1.36933 * 121.34477 * 224.34921 * 21 20 19 23 23 H 1.08005 * 119.99758 * 152.09365 * 22 21 20 24 24 C 1.38812 * 120.00592 * 332.09714 * 22 21 20 25 25 N 1.31619 * 119.99623 * 349.00256 * 24 22 21 26 26 Si 1.86796 * 120.00363 * 169.00890 * 24 22 21 27 27 H 1.48507 * 109.46968 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47371 * 119.99726 * 26 24 22 29 29 H 1.48494 * 109.47291 * 239.99868 * 26 24 22 30 30 H 1.09003 * 109.47157 * 270.13775 * 1 2 3 31 31 H 1.08994 * 109.47452 * 30.13799 * 1 2 3 32 32 H 1.09003 * 109.47179 * 150.14556 * 1 2 3 33 33 H 1.08006 * 125.43761 * 0.02562 * 3 2 1 34 34 H 1.08004 * 125.80489 * 179.97438 * 5 4 3 35 35 H 0.96998 * 120.00121 * 359.97438 * 9 7 6 36 36 H 1.08995 * 109.47556 * 59.99665 * 10 9 7 37 37 H 1.09008 * 109.47203 * 299.99317 * 10 9 7 38 38 H 1.09004 * 109.19721 * 287.41366 * 13 11 10 39 39 H 1.09000 * 109.19922 * 46.69647 * 13 11 10 40 40 H 1.08003 * 119.70436 * 359.56096 * 15 14 13 41 41 H 1.08000 * 120.08470 * 179.97438 * 16 15 14 42 42 H 1.08004 * 120.14285 * 180.25656 * 17 16 15 43 43 H 1.07990 * 119.74839 * 179.97438 * 18 17 16 44 44 H 1.08994 * 109.44044 * 228.84854 * 20 19 14 45 45 H 1.09004 * 109.43718 * 108.97325 * 20 19 14 46 46 H 0.97001 * 119.99798 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5921 0.6588 -0.0059 5 6 3.6623 -0.6758 -0.0042 6 6 2.3923 -1.1738 0.0024 7 6 1.9914 -2.5920 0.0059 8 8 0.8126 -2.8906 0.0114 9 7 2.9313 -3.5580 0.0030 10 6 2.5328 -4.9677 0.0058 11 6 3.7822 -5.8509 0.0009 12 1 4.3447 -5.6991 0.9221 13 6 3.3770 -7.3190 -0.1214 14 6 4.5701 -8.1796 -0.4437 15 6 4.4716 -9.5411 -0.1829 16 6 5.5238 -10.3872 -0.4633 17 6 6.6880 -9.8793 -1.0095 18 6 6.7903 -8.5275 -1.2656 19 6 5.7331 -7.6741 -0.9797 20 6 5.9147 -6.2063 -1.2745 21 7 4.6255 -5.5162 -1.1586 22 6 4.2226 -4.5982 -2.0914 23 1 3.1698 -4.4372 -2.2709 24 6 5.1671 -3.8746 -2.8063 25 7 6.4322 -3.9065 -2.4447 26 14 4.6426 -2.8554 -4.2812 27 1 3.1764 -2.9866 -4.4774 28 1 4.9842 -1.4297 -4.0445 29 1 5.3500 -3.3391 -5.4939 30 1 -0.3633 0.0025 1.0277 31 1 -0.3634 0.8887 -0.5159 32 1 -0.3634 -0.8913 -0.5116 33 1 1.9895 2.1011 0.0004 34 1 4.5702 -1.2608 -0.0083 35 1 3.8716 -3.3198 -0.0018 36 1 1.9358 -5.1784 -0.8815 37 1 1.9431 -5.1768 0.8985 38 1 2.9402 -7.6499 0.8209 39 1 2.6363 -7.4216 -0.9144 40 1 3.5627 -9.9401 0.2428 41 1 5.4386 -11.4439 -0.2570 42 1 7.5137 -10.5379 -1.2349 43 1 7.6995 -8.1302 -1.6918 44 1 6.3017 -6.0846 -2.2861 45 1 6.6207 -5.7781 -0.5628 46 1 7.0923 -3.4011 -2.9445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054049318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:55 Heat of formation + Delta-G solvation = 9.175565 kcal Electronic energy + Delta-G solvation = -29834.990955 eV Core-core repulsion = 25883.902404 eV Total energy + Delta-G solvation = -3951.088551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.47784 -40.90476 -40.16074 -38.06344 -35.39423 -34.73850 -34.51759 -32.98273 -32.15924 -31.27709 -30.28362 -28.10504 -27.36850 -26.98977 -24.57661 -24.21482 -22.88649 -22.48042 -21.29409 -21.04231 -20.53926 -19.10142 -18.03286 -17.71405 -17.16323 -17.03942 -16.73593 -16.49883 -16.08413 -16.00790 -15.76825 -15.48694 -15.27392 -15.07684 -14.60176 -14.27951 -14.22648 -14.02680 -13.94504 -13.76651 -13.60352 -13.41262 -13.26646 -13.11573 -12.80548 -12.62359 -12.54604 -12.41940 -12.26841 -12.15589 -11.88200 -11.59915 -11.31524 -10.93274 -10.67878 -10.55028 -9.85286 -9.57859 -9.52602 -9.25247 -8.67306 -7.88144 -5.31501 0.40865 0.59824 0.63877 1.11200 1.36981 1.44351 1.49929 2.04096 2.31296 2.45512 2.49231 2.99496 3.30147 3.50348 3.68363 3.72276 3.84111 4.10669 4.14083 4.23931 4.25613 4.36610 4.40396 4.42401 4.50637 4.55824 4.67262 4.72862 4.82397 4.83361 4.91697 4.92912 4.97480 5.06434 5.09705 5.21244 5.23972 5.28290 5.43198 5.53112 5.55231 5.61232 5.70749 5.71755 5.75843 6.02045 6.02754 6.28695 6.35280 6.71497 7.14704 7.32930 7.79738 8.35738 9.18686 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.003690 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.181440 B = 7585.495920 C = 8768.808113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.164 4.164 3 C -0.035 4.035 4 O -0.177 6.177 5 C 0.033 3.967 6 C -0.260 4.260 7 C 0.578 3.422 8 O -0.586 6.586 9 N -0.690 5.690 10 C 0.143 3.857 11 C 0.160 3.840 12 H 0.046 0.954 13 C -0.085 4.085 14 C -0.083 4.083 15 C -0.128 4.128 16 C -0.132 4.132 17 C -0.128 4.128 18 C -0.137 4.137 19 C -0.108 4.108 20 C 0.223 3.777 21 N -0.598 5.598 22 C -0.228 4.228 23 H 0.059 0.941 24 C -0.025 4.025 25 N -0.922 5.922 26 Si 0.933 3.067 27 H -0.287 1.287 28 H -0.287 1.287 29 H -0.295 1.295 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.251 0.749 34 H 0.220 0.780 35 H 0.410 0.590 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.142 0.858 43 H 0.115 0.885 44 H 0.061 0.939 45 H 0.018 0.982 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 -0.707 7.519 8.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.166 4.166 3 C -0.100 4.100 4 O -0.071 6.071 5 C -0.038 4.038 6 C -0.264 4.264 7 C 0.366 3.634 8 O -0.470 6.470 9 N -0.339 5.339 10 C 0.019 3.981 11 C 0.054 3.946 12 H 0.063 0.937 13 C -0.124 4.124 14 C -0.084 4.084 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.109 4.109 20 C 0.098 3.902 21 N -0.322 5.322 22 C -0.358 4.358 23 H 0.077 0.923 24 C -0.222 4.222 25 N -0.568 5.568 26 Si 0.763 3.237 27 H -0.212 1.212 28 H -0.214 1.214 29 H -0.222 1.222 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.266 0.734 34 H 0.237 0.763 35 H 0.247 0.753 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.157 0.843 41 H 0.165 0.835 42 H 0.160 0.840 43 H 0.133 0.867 44 H 0.079 0.921 45 H 0.035 0.965 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.004 -0.633 7.440 8.472 hybrid contribution 0.507 0.516 -1.346 1.528 sum -3.496 -0.117 6.094 7.027 Atomic orbital electron populations 1.20164 0.87679 1.02913 1.02677 1.21733 0.98118 0.90514 1.06251 1.24451 0.78719 1.00823 1.06054 1.83798 1.30512 1.22006 1.70821 1.24714 0.99103 0.81207 0.98768 1.21577 0.94583 0.94189 1.16088 1.17525 0.85188 0.84701 0.75955 1.90659 1.18549 1.84104 1.53659 1.45752 1.09999 1.05846 1.72277 1.21230 0.96153 0.79791 1.00913 1.20839 0.90659 0.92737 0.90383 0.93654 1.20822 0.95190 0.94191 1.02162 1.19649 0.94806 0.94771 0.99140 1.21432 0.99945 0.92283 1.00901 1.21320 0.93272 1.00624 0.99721 1.21306 0.99043 0.94578 0.99617 1.21231 0.98443 0.94423 1.01477 1.20789 0.94379 0.97768 0.98014 1.19356 0.87010 0.84434 0.99425 1.44155 1.18435 1.45787 1.23838 1.19080 0.91450 1.12182 1.13067 0.92326 1.25318 0.96000 0.99374 1.01482 1.70061 1.00968 1.45039 1.40779 0.85734 0.77114 0.79253 0.81555 1.21237 1.21395 1.22197 0.90765 0.89069 0.92977 0.73357 0.76344 0.75304 0.93428 0.90359 0.88598 0.91447 0.84254 0.83460 0.84012 0.86688 0.92096 0.96471 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.02 10.00 71.23 0.71 -1.31 16 2 C -0.16 -4.88 6.37 -18.49 -0.12 -4.99 16 3 C -0.04 -0.83 11.96 66.89 0.80 -0.03 16 4 O -0.18 -4.96 10.52 4.54 0.05 -4.91 16 5 C 0.03 1.03 11.61 67.39 0.78 1.81 16 6 C -0.26 -9.15 6.31 -18.99 -0.12 -9.27 16 7 C 0.58 23.03 7.81 86.65 0.68 23.70 16 8 O -0.59 -26.01 15.41 -4.07 -0.06 -26.07 16 9 N -0.69 -26.38 4.08 -466.41 -1.90 -28.29 16 10 C 0.14 5.23 4.43 86.38 0.38 5.61 16 11 C 0.16 5.88 2.99 44.78 0.13 6.01 16 12 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 13 C -0.08 -2.70 5.21 29.75 0.15 -2.55 16 14 C -0.08 -2.83 5.76 -19.85 -0.11 -2.94 16 15 C -0.13 -3.51 9.59 22.37 0.21 -3.29 16 16 C -0.13 -3.27 10.04 22.20 0.22 -3.05 16 17 C -0.13 -3.46 10.05 22.21 0.22 -3.23 16 18 C -0.14 -4.63 9.62 22.35 0.22 -4.42 16 19 C -0.11 -4.15 5.82 -19.82 -0.12 -4.27 16 20 C 0.22 10.10 4.80 85.63 0.41 10.51 16 21 N -0.60 -26.70 2.86 -680.30 -1.95 -28.65 16 22 C -0.23 -11.22 7.09 84.03 0.60 -10.62 16 23 H 0.06 3.05 6.18 -2.91 -0.02 3.03 16 24 C -0.03 -1.29 5.08 84.86 0.43 -0.85 16 25 N -0.92 -48.67 11.06 21.65 0.24 -48.43 16 26 Si 0.93 43.81 29.57 68.60 2.03 45.84 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 29 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.67 6.92 -2.39 -0.02 1.66 16 33 H 0.25 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.22 6.44 7.47 -2.91 -0.02 6.41 16 35 H 0.41 15.99 6.45 -92.71 -0.60 15.39 16 36 H 0.05 1.94 7.25 -2.39 -0.02 1.92 16 37 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.10 2.44 8.11 -2.39 -0.02 2.42 16 39 H 0.07 2.25 8.03 -2.39 -0.02 2.23 16 40 H 0.14 3.01 8.05 -2.91 -0.02 2.99 16 41 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 42 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 43 H 0.12 3.79 8.05 -2.92 -0.02 3.76 16 44 H 0.06 3.15 6.45 -2.39 -0.02 3.14 16 45 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 Total: -1.00 -64.66 375.56 4.31 -60.36 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.41 Total: 33.31 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 5.49 Total: -3.18 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -3.61 Total: -105.36 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.02 Total: -30.98 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -64.66 4.31 -60.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054049318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.535 kcal (2) G-P(sol) polarization free energy of solvation -64.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds