Wall clock time and date at job start Sat Apr 11 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35128 * 126.44244 * 2 1 4 4 O 1.33926 * 108.76894 * 179.75635 * 3 2 1 5 5 C 1.34908 * 109.38657 * 0.40740 * 4 3 2 6 6 C 1.46663 * 125.99347 * 179.85819 * 5 4 3 7 7 O 1.21693 * 120.00204 * 179.68923 * 6 5 4 8 8 N 1.34780 * 119.99582 * 359.69224 * 6 5 4 9 9 C 1.46502 * 119.99710 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46846 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.76377 * 294.26538 * 10 9 8 12 12 C 1.52791 * 109.76772 * 173.47155 * 10 9 8 13 13 C 1.50603 * 110.84484 * 192.82767 * 12 10 9 14 14 C 1.38975 * 117.63365 * 199.98169 * 13 12 10 15 15 C 1.37907 * 120.57533 * 181.13959 * 14 13 12 16 16 C 1.38261 * 119.83279 * 0.02562 * 15 14 13 17 17 C 1.37957 * 119.71440 * 359.73624 * 16 15 14 18 18 C 1.37668 * 122.84197 * 20.63481 * 13 12 10 19 19 C 1.50808 * 122.33822 * 357.88335 * 18 13 12 20 20 N 1.46686 * 109.68746 * 11.94963 * 19 18 13 21 21 C 1.36942 * 121.31593 * 135.58514 * 20 19 18 22 22 H 1.08003 * 119.99812 * 144.31415 * 21 20 19 23 23 C 1.38803 * 120.00225 * 324.31859 * 21 20 19 24 24 N 1.31622 * 120.00167 * 158.41197 * 23 21 20 25 25 Si 1.86805 * 120.00165 * 338.41250 * 23 21 20 26 26 H 1.48496 * 109.47356 * 95.35059 * 25 23 21 27 27 H 1.48501 * 109.46950 * 215.35004 * 25 23 21 28 28 H 1.48497 * 109.46653 * 335.34765 * 25 23 21 29 29 C 1.36546 * 108.02110 * 359.59586 * 5 4 3 30 30 H 1.09008 * 109.47464 * 269.99503 * 1 2 3 31 31 H 1.09002 * 109.47653 * 29.99711 * 1 2 3 32 32 H 1.08999 * 109.47385 * 149.99587 * 1 2 3 33 33 H 1.08001 * 125.61608 * 0.03995 * 3 2 1 34 34 H 0.97001 * 119.99949 * 359.97438 * 8 6 5 35 35 H 1.08991 * 109.46740 * 60.00501 * 9 8 6 36 36 H 1.09000 * 109.47163 * 299.99858 * 9 8 6 37 37 H 1.08996 * 109.20062 * 72.47774 * 12 10 9 38 38 H 1.09000 * 109.20212 * 313.17951 * 12 10 9 39 39 H 1.08003 * 119.70839 * 1.12138 * 14 13 12 40 40 H 1.08007 * 120.08101 * 179.97438 * 15 14 13 41 41 H 1.07996 * 120.14283 * 179.76798 * 16 15 14 42 42 H 1.08007 * 119.74711 * 180.02562 * 17 16 15 43 43 H 1.08998 * 109.43841 * 132.01475 * 19 18 13 44 44 H 1.08999 * 109.43921 * 251.92961 * 19 18 13 45 45 H 0.97001 * 120.00088 * 179.97438 * 24 23 21 46 46 H 1.08003 * 126.64370 * 180.21479 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3096 1.0870 0.0000 4 8 3.5856 0.6805 0.0054 5 6 3.6260 -0.6680 -0.0001 6 6 4.8379 -1.4941 0.0002 7 8 4.7471 -2.7076 0.0006 8 7 6.0521 -0.9090 0.0001 9 6 7.2627 -1.7341 0.0010 10 6 8.4965 -0.8293 0.0014 11 1 8.5449 -0.2717 -0.9339 12 6 9.7579 -1.6757 0.1658 13 6 10.9479 -0.8083 0.4812 14 6 12.2115 -1.3370 0.2460 15 6 13.3435 -0.6044 0.5351 16 6 13.2232 0.6674 1.0640 17 6 11.9701 1.1967 1.2939 18 6 10.8297 0.4624 0.9976 19 6 9.4910 1.1103 1.2474 20 7 8.4275 0.1062 1.1360 21 6 7.4107 0.0419 2.0509 22 1 6.4138 -0.2251 1.7325 23 6 7.6611 0.3199 3.3876 24 7 6.6739 0.6763 4.1818 25 14 9.3992 0.1883 4.0593 26 1 10.0420 1.5266 4.0350 27 1 9.3533 -0.3135 5.4563 28 1 10.1839 -0.7532 3.2208 29 6 2.3407 -1.1291 -0.0001 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 1.9769 2.1145 0.0006 34 1 6.1244 0.0583 -0.0005 35 1 7.2737 -2.3638 -0.8885 36 1 7.2733 -2.3628 0.8914 37 1 9.9467 -2.2210 -0.7589 38 1 9.6084 -2.3881 0.9771 39 1 12.3076 -2.3306 -0.1665 40 1 14.3215 -1.0233 0.3495 41 1 14.1064 1.2441 1.2957 42 1 11.8755 2.1903 1.7066 43 1 9.4783 1.5425 2.2480 44 1 9.3253 1.8964 0.5107 45 1 6.8488 0.8703 5.1160 46 1 2.0266 -2.1624 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054050336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:58 Heat of formation + Delta-G solvation = 22.198541 kcal Electronic energy + Delta-G solvation = -29714.650368 eV Core-core repulsion = 25764.126536 eV Total energy + Delta-G solvation = -3950.523833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.63562 -41.14795 -40.34782 -38.24578 -35.64910 -35.03728 -34.55396 -33.42218 -32.13388 -31.54991 -30.72844 -28.26870 -27.38009 -26.89901 -24.90083 -24.09571 -23.00650 -22.44795 -22.09956 -21.00987 -20.51602 -19.21919 -18.33756 -17.72889 -17.37638 -17.25529 -17.04964 -16.83789 -16.59538 -16.04444 -15.82059 -15.35089 -15.14770 -14.99077 -14.62720 -14.35921 -14.34194 -14.04436 -13.99997 -13.92442 -13.88741 -13.71305 -13.46182 -13.13487 -12.92245 -12.79007 -12.59398 -12.50769 -12.27461 -12.15075 -11.87487 -11.63351 -11.48441 -11.28186 -10.68556 -10.67640 -10.01460 -9.64971 -9.46030 -9.38404 -8.81543 -8.14441 -5.52692 0.09257 0.48722 0.50539 1.24891 1.38393 1.39089 1.51136 1.77182 2.16470 2.33844 2.43021 2.87115 3.05391 3.21918 3.72282 3.74827 3.88002 3.90716 4.07389 4.10155 4.15190 4.32100 4.34004 4.36286 4.40449 4.54077 4.60300 4.67148 4.71025 4.81818 4.84392 4.87625 4.90889 4.91216 4.96995 5.08478 5.11855 5.15156 5.17518 5.30482 5.43018 5.56823 5.58741 5.62022 5.80409 5.92019 5.94322 6.16931 6.26368 6.51238 6.92206 7.06653 7.60170 8.06914 9.01175 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.003369 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.694407 B = 8309.599882 C = 9129.332681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.205 4.205 3 C -0.004 4.004 4 O -0.172 6.172 5 C -0.099 4.099 6 C 0.592 3.408 7 O -0.569 6.569 8 N -0.686 5.686 9 C 0.137 3.863 10 C 0.161 3.839 11 H 0.072 0.928 12 C -0.091 4.091 13 C -0.078 4.078 14 C -0.128 4.128 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.142 4.142 18 C -0.109 4.109 19 C 0.168 3.832 20 N -0.612 5.612 21 C -0.251 4.251 22 H 0.097 0.903 23 C -0.018 4.018 24 N -0.945 5.945 25 Si 0.918 3.082 26 H -0.284 1.284 27 H -0.327 1.327 28 H -0.253 1.253 29 C -0.129 4.129 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.248 0.752 34 H 0.415 0.585 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.143 0.857 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.120 0.880 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.257 0.743 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 0.917 -12.813 12.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.206 4.206 3 C -0.073 4.073 4 O -0.067 6.067 5 C -0.151 4.151 6 C 0.380 3.620 7 O -0.452 6.452 8 N -0.336 5.336 9 C 0.014 3.986 10 C 0.055 3.945 11 H 0.090 0.910 12 C -0.130 4.130 13 C -0.079 4.079 14 C -0.145 4.145 15 C -0.144 4.144 16 C -0.145 4.145 17 C -0.161 4.161 18 C -0.110 4.110 19 C 0.043 3.957 20 N -0.337 5.337 21 C -0.380 4.380 22 H 0.114 0.886 23 C -0.214 4.214 24 N -0.590 5.590 25 Si 0.749 3.251 26 H -0.211 1.211 27 H -0.257 1.257 28 H -0.177 1.177 29 C -0.150 4.150 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.264 0.736 34 H 0.253 0.747 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.163 0.837 42 H 0.138 0.862 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.070 0.285 -12.685 12.733 hybrid contribution 0.697 0.420 1.499 1.705 sum 1.767 0.706 -11.187 11.347 Atomic orbital electron populations 1.20245 0.86027 1.04100 1.03028 1.20859 0.99354 0.91352 1.09027 1.25099 0.78900 1.01842 1.01499 1.84098 1.31013 1.21189 1.70401 1.21950 0.96183 0.81262 1.15723 1.16792 0.82209 0.86212 0.76831 1.90778 1.86802 1.13510 1.54098 1.46053 1.04948 1.11669 1.70888 1.21398 0.82454 0.93079 1.01698 1.21020 0.92175 0.90072 0.91185 0.90979 1.20891 0.92483 0.97095 1.02503 1.19667 0.95738 0.93772 0.98695 1.21474 0.91453 1.00801 1.00815 1.21384 0.99338 0.94581 0.99130 1.21333 0.97008 0.96641 0.99531 1.21292 0.92874 1.00401 1.01527 1.20324 0.95913 0.95424 0.99362 1.20053 0.84942 0.91289 0.99375 1.44521 1.27138 1.33577 1.28442 1.19477 0.90085 1.41704 0.86747 0.88605 1.25976 0.98434 1.00066 0.96923 1.69949 1.33189 1.49771 1.06125 0.86265 0.84494 0.78311 0.75995 1.21140 1.25664 1.17719 1.22053 0.90539 1.01410 1.00951 0.90843 0.89187 0.90807 0.73608 0.74655 0.89004 0.93270 0.87700 0.92005 0.83942 0.83165 0.83664 0.86220 0.93238 0.92642 0.93415 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.39 71.23 0.74 -0.52 16 2 C -0.20 -5.13 6.14 -20.07 -0.12 -5.25 16 3 C 0.00 -0.10 12.00 67.10 0.81 0.70 16 4 O -0.17 -5.83 10.40 -4.93 -0.05 -5.88 16 5 C -0.10 -3.66 7.13 24.08 0.17 -3.49 16 6 C 0.59 24.20 7.77 86.44 0.67 24.87 16 7 O -0.57 -25.57 16.86 -4.33 -0.07 -25.64 16 8 N -0.69 -26.59 3.28 -467.09 -1.53 -28.12 16 9 C 0.14 4.94 4.56 86.38 0.39 5.33 16 10 C 0.16 5.58 3.02 44.79 0.14 5.71 16 11 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 12 C -0.09 -2.83 5.21 29.75 0.16 -2.68 16 13 C -0.08 -2.59 5.63 -19.85 -0.11 -2.70 16 14 C -0.13 -3.41 9.59 22.37 0.21 -3.19 16 15 C -0.13 -3.03 10.04 22.20 0.22 -2.81 16 16 C -0.13 -3.30 10.05 22.21 0.22 -3.07 16 17 C -0.14 -4.56 9.62 22.35 0.22 -4.35 16 18 C -0.11 -3.96 4.20 -19.82 -0.08 -4.04 16 19 C 0.17 6.89 5.13 85.63 0.44 7.33 16 20 N -0.61 -26.39 2.46 -680.35 -1.68 -28.07 16 21 C -0.25 -13.11 8.34 84.03 0.70 -12.40 16 22 H 0.10 5.27 4.85 -2.91 -0.01 5.25 16 23 C -0.02 -1.03 5.27 84.86 0.45 -0.58 16 24 N -0.95 -58.60 13.97 21.65 0.30 -58.30 16 25 Si 0.92 47.09 24.41 68.60 1.67 48.76 16 26 H -0.28 -14.07 6.70 99.48 0.67 -13.41 16 27 H -0.33 -17.69 7.11 99.48 0.71 -16.98 16 28 H -0.25 -12.63 6.22 99.48 0.62 -12.01 16 29 C -0.13 -4.09 10.57 22.39 0.24 -3.85 16 30 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.25 3.63 8.06 -2.91 -0.02 3.61 16 34 H 0.42 16.34 6.87 -92.71 -0.64 15.70 16 35 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.05 2.07 7.89 -2.39 -0.02 2.05 16 37 H 0.10 2.46 8.10 -2.39 -0.02 2.44 16 38 H 0.06 2.15 8.01 -2.39 -0.02 2.14 16 39 H 0.14 2.97 8.05 -2.91 -0.02 2.95 16 40 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.12 3.61 8.05 -2.91 -0.02 3.59 16 43 H 0.05 2.30 3.96 -2.39 -0.01 2.29 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 46 H 0.16 4.77 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -73.91 371.27 4.35 -69.56 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.25 Total: 32.68 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.45 Total: -4.99 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -2.90 Total: -114.49 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.12 Total: -31.52 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.67 Total: 48.76 kcal Total: -73.91 4.35 -69.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054050336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.762 kcal (2) G-P(sol) polarization free energy of solvation -73.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds