Wall clock time and date at job start Sat Apr 11 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.46865 * 2 1 4 4 C 1.32995 * 119.99678 * 125.75515 * 3 2 1 5 5 C 1.50701 * 119.99885 * 185.15900 * 4 3 2 6 6 C 1.47097 * 120.00225 * 5.16237 * 4 3 2 7 7 O 1.21608 * 120.00049 * 263.88901 * 6 4 3 8 8 N 1.34783 * 119.99674 * 83.89200 * 6 4 3 9 9 C 1.46504 * 119.99756 * 175.02373 * 8 6 4 10 10 C 1.53001 * 112.84960 * 304.09128 * 9 8 6 11 11 N 1.46497 * 109.46870 * 286.58899 * 10 9 8 12 12 C 1.34780 * 119.99704 * 175.01878 * 11 10 9 13 13 O 1.21280 * 120.00033 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99890 * 179.97438 * 12 11 10 15 15 S 1.81004 * 109.46977 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99813 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00207 * 359.97438 * 16 15 14 18 18 C 1.38802 * 119.99850 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99643 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00084 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47107 * 89.99422 * 20 18 16 22 22 H 1.48500 * 109.47061 * 209.99534 * 20 18 16 23 23 H 1.48496 * 109.46920 * 329.99620 * 20 18 16 24 24 C 1.53782 * 113.69093 * 75.35714 * 9 8 6 25 25 C 1.53788 * 87.07959 * 89.12877 * 24 9 8 26 26 C 1.53774 * 113.61486 * 172.89392 * 9 8 6 27 27 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47205 * 299.99544 * 1 2 3 29 29 H 1.08994 * 109.47057 * 60.00150 * 1 2 3 30 30 H 1.08996 * 109.46832 * 240.00063 * 2 1 3 31 31 H 1.08994 * 109.47057 * 119.99850 * 2 1 3 32 32 H 1.08003 * 120.00355 * 305.76068 * 3 2 1 33 33 H 1.09004 * 109.47382 * 270.00437 * 5 4 3 34 34 H 1.09005 * 109.47247 * 30.00144 * 5 4 3 35 35 H 1.08997 * 109.47537 * 150.00418 * 5 4 3 36 36 H 0.96994 * 120.00495 * 355.01810 * 8 6 4 37 37 H 1.08998 * 109.47274 * 166.58480 * 10 9 8 38 38 H 1.09003 * 109.46745 * 46.58656 * 10 9 8 39 39 H 0.96996 * 120.00389 * 355.01045 * 11 10 9 40 40 H 1.09002 * 109.46924 * 299.99152 * 14 12 11 41 41 H 1.08995 * 109.47522 * 59.99456 * 14 12 11 42 42 H 0.97004 * 119.99175 * 180.02562 * 19 18 16 43 43 H 1.09000 * 113.61608 * 203.67188 * 24 9 8 44 44 H 1.08994 * 113.61551 * 334.58544 * 24 9 8 45 45 H 1.09001 * 113.60950 * 270.88619 * 25 24 9 46 46 H 1.09000 * 113.61647 * 139.98258 * 25 24 9 47 47 H 1.09004 * 113.61511 * 25.34937 * 26 9 8 48 48 H 1.09004 * 113.61446 * 156.24903 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8885 1.8234 0.9347 5 6 3.3009 3.2711 1.0055 6 6 3.4329 0.8556 1.8994 7 8 2.9182 0.7333 2.9944 8 7 4.5024 0.1044 1.5698 9 6 5.1117 -0.7798 2.5664 10 6 5.5346 -0.0402 3.8373 11 7 6.7300 0.7604 3.5614 12 6 7.2268 1.5787 4.5102 13 8 6.6839 1.6524 5.5922 14 6 8.4568 2.4019 4.2266 15 16 8.8709 3.3901 5.6854 16 6 10.3032 4.2270 5.0914 17 1 10.6592 4.0430 4.0885 18 6 10.9740 5.1228 5.9125 19 7 12.0443 5.7476 5.4689 20 14 10.3588 5.4405 7.6475 21 1 11.0020 4.4840 8.5836 22 1 10.6999 6.8295 8.0470 23 1 8.8854 5.2606 7.6908 24 6 4.2993 -2.0569 2.8384 25 6 5.0931 -2.7109 1.6951 26 6 6.2071 -1.6933 1.9918 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6970 2.1122 -0.7590 33 1 4.1847 3.4279 0.3869 34 1 2.4873 3.8990 0.6422 35 1 3.5292 3.5339 2.0384 36 1 4.8686 0.1491 0.6727 37 1 5.7550 -0.7636 4.6223 38 1 4.7261 0.6143 4.1629 39 1 7.1640 0.7016 2.6959 40 1 9.2894 1.7404 3.9871 41 1 8.2643 3.0639 3.3824 42 1 12.5133 6.3733 6.0429 43 1 4.4954 -2.4995 3.8150 44 1 3.2354 -1.9510 2.6264 45 1 4.6336 -2.5820 0.7151 46 1 5.3794 -3.7431 1.8970 47 1 6.6835 -1.2938 1.0964 48 1 6.9248 -2.0364 2.7370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062579162.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:15 Heat of formation + Delta-G solvation = -50.719188 kcal Electronic energy + Delta-G solvation = -27546.815267 eV Core-core repulsion = 23728.573436 eV Total energy + Delta-G solvation = -3818.241831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.12187 -39.18386 -38.52278 -36.02986 -34.21312 -33.42858 -32.45353 -32.42669 -30.05209 -27.55585 -27.22431 -26.18638 -25.59199 -24.21107 -22.82236 -22.24845 -20.41747 -19.60005 -19.48165 -17.92354 -16.67668 -16.64156 -16.35061 -16.05249 -15.66495 -15.24359 -15.17620 -14.95007 -14.84541 -14.32086 -13.92320 -13.78272 -13.68429 -13.36469 -13.21046 -13.17149 -12.97833 -12.78502 -12.77133 -12.62338 -12.37465 -12.20123 -11.86293 -11.49535 -11.39238 -11.34174 -11.25456 -11.15614 -10.99474 -10.76072 -10.58788 -10.02226 -9.84618 -9.53431 -9.29969 -9.27144 -8.99587 -8.86240 -8.47618 -6.89955 -6.28082 -3.99320 1.40050 2.33506 2.78039 2.84688 3.04502 3.31484 3.35430 3.52765 3.65316 4.03262 4.21448 4.29448 4.34792 4.39798 4.43296 4.51122 4.64880 4.77870 4.87703 4.97994 5.07223 5.07929 5.11121 5.25517 5.31172 5.34181 5.35222 5.38501 5.44692 5.45727 5.48864 5.56004 5.63464 5.66406 5.74590 5.77711 5.80323 5.83463 5.97826 6.01166 6.02007 6.22381 6.31470 6.57731 7.16638 7.65926 7.93976 7.95077 8.42106 8.55689 9.18400 10.81087 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.002524 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.556336 B =11089.874423 C =11978.789226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.116 4.116 4 C -0.162 4.162 5 C -0.108 4.108 6 C 0.564 3.436 7 O -0.523 6.523 8 N -0.705 5.705 9 C 0.140 3.860 10 C 0.119 3.881 11 N -0.733 5.733 12 C 0.528 3.472 13 O -0.517 6.517 14 C -0.123 4.123 15 S -0.141 6.141 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.138 4.138 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.402 0.598 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.396 0.604 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.270 0.730 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.212 -16.309 -17.140 30.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C -0.135 4.135 4 C -0.165 4.165 5 C -0.165 4.165 6 C 0.350 3.650 7 O -0.398 6.398 8 N -0.358 5.358 9 C 0.052 3.948 10 C -0.006 4.006 11 N -0.387 5.387 12 C 0.314 3.686 13 O -0.392 6.392 14 C -0.273 4.273 15 S 0.085 5.915 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.172 4.172 25 C -0.176 4.176 26 C -0.176 4.176 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.229 0.771 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.345 -16.123 -14.470 29.720 hybrid contribution 1.070 0.297 -1.473 1.845 sum -19.275 -15.826 -15.943 29.600 Atomic orbital electron populations 1.21672 0.94405 1.01973 1.02240 1.20756 0.96927 0.93928 1.02568 1.23360 0.95976 0.97805 0.96386 1.21573 1.01449 0.96658 0.96852 1.20708 1.01983 0.90232 1.03575 1.18452 0.79414 0.79884 0.87207 1.90840 1.58829 1.67452 1.22678 1.45728 1.31724 1.43656 1.14653 1.21584 0.94946 0.89094 0.89129 1.21582 0.88373 0.95459 0.95155 1.45867 1.30172 1.45415 1.17221 1.20268 0.85102 0.79172 0.84043 1.90712 1.60057 1.64845 1.23552 1.23266 0.97573 1.01403 1.05085 1.84831 1.37224 1.51928 1.17507 1.22319 1.11411 1.28843 1.04257 0.89430 1.24714 0.93870 0.94117 0.98636 1.69943 1.17666 1.26941 1.37197 0.86734 0.82350 0.78435 0.84354 1.19207 1.19955 1.15891 1.23224 0.99917 0.94421 0.99664 1.22846 0.96844 0.99011 0.98912 1.23253 0.96410 0.96076 1.01821 0.92348 0.92315 0.92442 0.90683 0.91361 0.85676 0.90790 0.90915 0.90966 0.76255 0.90854 0.89271 0.77093 0.88602 0.88667 0.91968 0.88797 0.90698 0.90142 0.90820 0.90548 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.90 37.16 0.37 -0.53 16 2 C -0.10 -0.69 6.18 -27.88 -0.17 -0.86 16 3 C -0.12 -0.81 9.20 -36.13 -0.33 -1.15 16 4 C -0.16 -1.46 5.75 -102.85 -0.59 -2.05 16 5 C -0.11 -0.92 10.03 36.01 0.36 -0.56 16 6 C 0.56 6.20 4.86 -12.66 -0.06 6.14 16 7 O -0.52 -7.99 15.15 5.27 0.08 -7.91 16 8 N -0.71 -5.71 5.19 -48.02 -0.25 -5.96 16 9 C 0.14 1.21 0.64 -131.01 -0.08 1.13 16 10 C 0.12 1.52 5.06 -4.04 -0.02 1.50 16 11 N -0.73 -9.69 5.40 -60.29 -0.33 -10.02 16 12 C 0.53 9.75 7.85 -10.98 -0.09 9.66 16 13 O -0.52 -11.79 15.86 5.56 0.09 -11.70 16 14 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 15 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 16 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 17 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 18 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 19 N -0.88 -26.67 13.97 55.49 0.78 -25.90 16 20 Si 0.86 22.05 27.74 -169.99 -4.72 17.33 16 21 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.23 -6.07 6.74 56.52 0.38 -5.69 16 24 C -0.13 -1.07 7.18 -25.91 -0.19 -1.26 16 25 C -0.14 -0.79 7.99 -25.92 -0.21 -1.00 16 26 C -0.14 -0.85 6.66 -25.92 -0.17 -1.02 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.57 6.35 -51.93 -0.33 0.24 16 32 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.51 8.07 -51.93 -0.42 0.10 16 35 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 36 H 0.40 2.22 8.61 -40.82 -0.35 1.87 16 37 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 38 H 0.09 1.47 6.09 -51.93 -0.32 1.16 16 39 H 0.40 4.01 8.01 -40.82 -0.33 3.69 16 40 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 41 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 42 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.09 0.75 7.93 -51.93 -0.41 0.34 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 48 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 408.88 15.07 6.16 6.16 Total: -1.00 -36.50 408.88 -8.98 -45.48 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.06 Total: 2.40 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.75 Total: -4.25 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.20 Total: -41.88 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.17 Total: -19.61 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.33 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.50 -8.98 -45.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062579162.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.240 kcal (2) G-P(sol) polarization free energy of solvation -36.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds