Wall clock time and date at job start Sat Apr 11 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.46865 * 2 1 4 4 C 1.32995 * 119.99678 * 125.75515 * 3 2 1 5 5 C 1.50701 * 119.99885 * 185.15900 * 4 3 2 6 6 C 1.47097 * 120.00225 * 5.16237 * 4 3 2 7 7 O 1.21608 * 120.00049 * 263.88901 * 6 4 3 8 8 N 1.34783 * 119.99674 * 83.89200 * 6 4 3 9 9 C 1.46504 * 119.99756 * 175.02373 * 8 6 4 10 10 C 1.53001 * 112.84960 * 304.09128 * 9 8 6 11 11 N 1.46497 * 109.46870 * 286.58899 * 10 9 8 12 12 C 1.34780 * 119.99704 * 175.01878 * 11 10 9 13 13 O 1.21280 * 120.00033 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99890 * 179.97438 * 12 11 10 15 15 S 1.81004 * 109.46977 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99813 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00207 * 359.97438 * 16 15 14 18 18 C 1.38802 * 119.99850 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99643 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00084 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47107 * 89.99422 * 20 18 16 22 22 H 1.48500 * 109.47061 * 209.99534 * 20 18 16 23 23 H 1.48496 * 109.46920 * 329.99620 * 20 18 16 24 24 C 1.53782 * 113.69093 * 75.35714 * 9 8 6 25 25 C 1.53788 * 87.07959 * 89.12877 * 24 9 8 26 26 C 1.53774 * 113.61486 * 172.89392 * 9 8 6 27 27 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47205 * 299.99544 * 1 2 3 29 29 H 1.08994 * 109.47057 * 60.00150 * 1 2 3 30 30 H 1.08996 * 109.46832 * 240.00063 * 2 1 3 31 31 H 1.08994 * 109.47057 * 119.99850 * 2 1 3 32 32 H 1.08003 * 120.00355 * 305.76068 * 3 2 1 33 33 H 1.09004 * 109.47382 * 270.00437 * 5 4 3 34 34 H 1.09005 * 109.47247 * 30.00144 * 5 4 3 35 35 H 1.08997 * 109.47537 * 150.00418 * 5 4 3 36 36 H 0.96994 * 120.00495 * 355.01810 * 8 6 4 37 37 H 1.08998 * 109.47274 * 166.58480 * 10 9 8 38 38 H 1.09003 * 109.46745 * 46.58656 * 10 9 8 39 39 H 0.96996 * 120.00389 * 355.01045 * 11 10 9 40 40 H 1.09002 * 109.46924 * 299.99152 * 14 12 11 41 41 H 1.08995 * 109.47522 * 59.99456 * 14 12 11 42 42 H 0.97004 * 119.99175 * 180.02562 * 19 18 16 43 43 H 1.09000 * 113.61608 * 203.67188 * 24 9 8 44 44 H 1.08994 * 113.61551 * 334.58544 * 24 9 8 45 45 H 1.09001 * 113.60950 * 270.88619 * 25 24 9 46 46 H 1.09000 * 113.61647 * 139.98258 * 25 24 9 47 47 H 1.09004 * 113.61511 * 25.34937 * 26 9 8 48 48 H 1.09004 * 113.61446 * 156.24903 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8885 1.8234 0.9347 5 6 3.3009 3.2711 1.0055 6 6 3.4329 0.8556 1.8994 7 8 2.9182 0.7333 2.9944 8 7 4.5024 0.1044 1.5698 9 6 5.1117 -0.7798 2.5664 10 6 5.5346 -0.0402 3.8373 11 7 6.7300 0.7604 3.5614 12 6 7.2268 1.5787 4.5102 13 8 6.6839 1.6524 5.5922 14 6 8.4568 2.4019 4.2266 15 16 8.8709 3.3901 5.6854 16 6 10.3032 4.2270 5.0914 17 1 10.6592 4.0430 4.0885 18 6 10.9740 5.1228 5.9125 19 7 12.0443 5.7476 5.4689 20 14 10.3588 5.4405 7.6475 21 1 11.0020 4.4840 8.5836 22 1 10.6999 6.8295 8.0470 23 1 8.8854 5.2606 7.6908 24 6 4.2993 -2.0569 2.8384 25 6 5.0931 -2.7109 1.6951 26 6 6.2071 -1.6933 1.9918 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6970 2.1122 -0.7590 33 1 4.1847 3.4279 0.3869 34 1 2.4873 3.8990 0.6422 35 1 3.5292 3.5339 2.0384 36 1 4.8686 0.1491 0.6727 37 1 5.7550 -0.7636 4.6223 38 1 4.7261 0.6143 4.1629 39 1 7.1640 0.7016 2.6959 40 1 9.2894 1.7404 3.9871 41 1 8.2643 3.0639 3.3824 42 1 12.5133 6.3733 6.0429 43 1 4.4954 -2.4995 3.8150 44 1 3.2354 -1.9510 2.6264 45 1 4.6336 -2.5820 0.7151 46 1 5.3794 -3.7431 1.8970 47 1 6.6835 -1.2938 1.0964 48 1 6.9248 -2.0364 2.7370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062579162.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:14 Heat of formation + Delta-G solvation = -76.767578 kcal Electronic energy + Delta-G solvation = -27547.944810 eV Core-core repulsion = 23728.573436 eV Total energy + Delta-G solvation = -3819.371374 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.93125 -40.49722 -39.40993 -36.71906 -35.51357 -34.67648 -34.19243 -33.04346 -31.52481 -28.58657 -27.92752 -27.78953 -26.78962 -25.01749 -23.48865 -22.85691 -21.85928 -20.32340 -20.23672 -19.89366 -18.03464 -17.59747 -17.34294 -17.11277 -16.94021 -16.59904 -16.46172 -15.85964 -15.71831 -15.66265 -15.04662 -14.93868 -14.78200 -14.54029 -14.43277 -14.10358 -13.94916 -13.73537 -13.41653 -13.37725 -13.35027 -13.33540 -13.02578 -12.97423 -12.90172 -12.65262 -12.04365 -11.92924 -11.90153 -11.86622 -11.80590 -11.40214 -11.18078 -11.09399 -10.84667 -10.54025 -10.16931 -10.10922 -9.90827 -9.01254 -8.52453 -6.23083 0.79417 0.96834 1.29843 1.45615 1.50835 1.53244 1.54117 2.11681 2.18530 2.24682 2.70829 2.85779 3.36938 3.55499 3.61337 3.70676 3.85653 3.88004 3.91999 4.12145 4.19993 4.34851 4.38852 4.42473 4.43220 4.46370 4.54453 4.70903 4.72564 4.76034 4.80462 4.82561 4.96286 5.00091 5.03250 5.07046 5.10215 5.16887 5.24361 5.27780 5.34262 5.44653 5.58990 5.63329 5.70371 6.10778 6.41784 6.48191 6.93128 7.16197 7.19059 8.59718 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.002524 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.556336 B =11089.874423 C =11978.789226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.092 4.092 4 C -0.191 4.191 5 C -0.104 4.104 6 C 0.561 3.439 7 O -0.576 6.576 8 N -0.689 5.689 9 C 0.136 3.864 10 C 0.122 3.878 11 N -0.703 5.703 12 C 0.531 3.469 13 O -0.567 6.567 14 C -0.107 4.107 15 S -0.181 6.181 16 C -0.525 4.525 17 H 0.065 0.935 18 C 0.047 3.953 19 N -0.915 5.915 20 Si 0.912 3.088 21 H -0.262 1.262 22 H -0.258 1.258 23 H -0.241 1.241 24 C -0.139 4.139 25 C -0.122 4.122 26 C -0.127 4.127 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.046 0.954 32 H 0.150 0.850 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.419 0.581 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.415 0.585 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.277 0.723 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.630 -17.754 -19.767 33.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.110 4.110 4 C -0.194 4.194 5 C -0.161 4.161 6 C 0.349 3.651 7 O -0.455 6.455 8 N -0.341 5.341 9 C 0.048 3.952 10 C -0.003 4.003 11 N -0.356 5.356 12 C 0.317 3.683 13 O -0.445 6.445 14 C -0.258 4.258 15 S 0.045 5.955 16 C -0.673 4.673 17 H 0.084 0.916 18 C -0.159 4.159 19 N -0.553 5.553 20 Si 0.734 3.266 21 H -0.187 1.187 22 H -0.182 1.182 23 H -0.165 1.165 24 C -0.178 4.178 25 C -0.160 4.160 26 C -0.164 4.164 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.065 0.935 32 H 0.168 0.832 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.058 0.942 36 H 0.257 0.743 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.252 0.748 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.077 0.923 45 H 0.112 0.888 46 H 0.104 0.896 47 H 0.119 0.881 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.733 -17.598 -17.191 32.172 hybrid contribution 1.105 0.640 -0.790 1.502 sum -19.627 -16.958 -17.981 31.561 Atomic orbital electron populations 1.21669 0.94031 1.02424 1.02108 1.20804 0.97186 0.93695 1.02629 1.23636 0.93551 0.98321 0.95523 1.21518 1.03658 0.96388 0.97824 1.20675 1.03230 0.90362 1.01812 1.18879 0.79457 0.79994 0.86739 1.90815 1.60579 1.69110 1.25035 1.45596 1.30662 1.42670 1.15201 1.21642 0.96784 0.88824 0.87926 1.21591 0.86552 0.94556 0.97625 1.45574 1.29668 1.43486 1.16911 1.20089 0.84600 0.79528 0.84118 1.90702 1.61399 1.66662 1.25758 1.23236 0.98942 1.01292 1.02289 1.84839 1.35822 1.53199 1.21607 1.22432 1.12410 1.29075 1.03391 0.91642 1.25518 0.94101 0.94069 1.02180 1.70010 1.18739 1.27764 1.38757 0.85903 0.81436 0.79121 0.80145 1.18683 1.18250 1.16467 1.23266 0.99214 0.94474 1.00873 1.22796 0.95552 0.99374 0.98242 1.23262 0.95817 0.94838 1.02531 0.91723 0.94202 0.90759 0.88243 0.93535 0.83206 0.89452 0.89413 0.94210 0.74316 0.91201 0.93171 0.74758 0.86365 0.86856 0.91357 0.89175 0.92332 0.88806 0.89606 0.88062 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.90 71.98 0.71 -0.83 16 2 C -0.11 -1.18 6.18 29.85 0.18 -1.00 16 3 C -0.09 -1.08 9.20 24.52 0.23 -0.86 16 4 C -0.19 -3.27 5.75 -18.70 -0.11 -3.38 16 5 C -0.10 -1.72 10.03 71.24 0.71 -1.00 16 6 C 0.56 12.43 4.86 86.57 0.42 12.85 16 7 O -0.58 -18.72 15.15 -4.06 -0.06 -18.78 16 8 N -0.69 -10.25 5.19 -424.09 -2.20 -12.45 16 9 C 0.14 2.20 0.64 4.13 0.00 2.20 16 10 C 0.12 3.12 5.06 86.38 0.44 3.56 16 11 N -0.70 -17.80 5.40 -463.06 -2.50 -20.30 16 12 C 0.53 19.36 7.85 87.66 0.69 20.05 16 13 O -0.57 -26.35 15.86 -3.03 -0.05 -26.39 16 14 C -0.11 -4.07 6.16 71.24 0.44 -3.63 16 15 S -0.18 -9.36 18.55 -56.49 -1.05 -10.41 16 16 C -0.53 -30.68 10.04 67.95 0.68 -29.99 16 17 H 0.07 3.99 8.03 -2.91 -0.02 3.96 16 18 C 0.05 2.77 5.50 84.86 0.47 3.23 16 19 N -0.91 -55.68 13.97 21.65 0.30 -55.38 16 20 Si 0.91 45.69 27.74 68.60 1.90 47.59 16 21 H -0.26 -12.81 7.11 99.48 0.71 -12.11 16 22 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.24 -12.20 6.74 99.48 0.67 -11.53 16 24 C -0.14 -2.14 7.18 31.12 0.22 -1.91 16 25 C -0.12 -1.02 7.99 31.12 0.25 -0.77 16 26 C -0.13 -1.14 6.66 31.12 0.21 -0.94 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.75 6.35 -2.39 -0.02 0.73 16 32 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.09 1.13 8.07 -2.38 -0.02 1.11 16 35 H 0.04 0.90 8.11 -2.39 -0.02 0.88 16 36 H 0.42 3.45 8.61 -92.71 -0.80 2.66 16 37 H 0.07 1.85 7.90 -2.39 -0.02 1.83 16 38 H 0.05 1.75 6.09 -2.39 -0.01 1.74 16 39 H 0.42 7.30 8.01 -92.71 -0.74 6.56 16 40 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 41 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 42 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.09 1.43 7.93 -2.39 -0.02 1.41 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.10 0.47 8.10 -2.38 -0.02 0.45 16 48 H 0.10 1.00 8.10 -2.38 -0.02 0.98 16 Total: -1.00 -83.15 408.88 1.28 -81.87 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -0.61 Total: 16.68 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.54 Total: -2.43 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -4.40 Total: -88.14 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -0.11 Total: -45.18 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Atomic # 16 Polarization: -9.36 SS G_CDS: -1.05 Total: -10.41 kcal Total: -83.15 1.28 -81.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062579162.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.107 kcal (2) G-P(sol) polarization free energy of solvation -83.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds