Wall clock time and date at job start Sat Apr 11 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00046 * 2 1 4 4 C 1.52998 * 109.46922 * 124.99647 * 3 2 1 5 5 C 1.53002 * 109.47229 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47270 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99869 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99700 * 180.02562 * 6 5 4 9 9 C 1.46494 * 119.99806 * 174.96614 * 8 6 5 10 10 C 1.53002 * 112.85302 * 65.35704 * 9 8 6 11 11 N 1.46505 * 109.46709 * 49.24994 * 10 9 8 12 12 C 1.34780 * 119.99496 * 174.93116 * 11 10 9 13 13 O 1.21278 * 120.00220 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99587 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47074 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00133 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00168 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99945 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00332 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99960 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46962 * 59.99957 * 20 18 16 22 22 H 1.48500 * 109.47206 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46753 * 300.00377 * 20 18 16 24 24 C 1.53783 * 113.61616 * 196.55811 * 9 8 6 25 25 C 1.53955 * 87.02116 * 89.22409 * 24 9 8 26 26 C 1.53779 * 113.61097 * 294.16445 * 9 8 6 27 27 H 1.08003 * 119.99958 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99947 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.99947 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47025 * 5.00270 * 3 2 1 31 31 H 1.08999 * 109.47228 * 245.00049 * 3 2 1 32 32 H 1.09003 * 109.46762 * 60.00461 * 4 3 2 33 33 H 1.08999 * 109.47497 * 300.00237 * 4 3 2 34 34 H 1.08997 * 109.46705 * 59.99815 * 5 4 3 35 35 H 1.09009 * 109.47031 * 300.00453 * 5 4 3 36 36 H 0.97001 * 120.00151 * 354.95872 * 8 6 5 37 37 H 1.08999 * 109.47038 * 289.25000 * 10 9 8 38 38 H 1.08997 * 109.47120 * 169.24685 * 10 9 8 39 39 H 0.96991 * 120.00017 * 355.20924 * 11 10 9 40 40 H 1.09005 * 109.47344 * 300.00329 * 14 12 11 41 41 H 1.09004 * 109.47329 * 60.00424 * 14 12 11 42 42 H 0.97003 * 120.00362 * 179.97438 * 19 18 16 43 43 H 1.08997 * 113.61785 * 203.74635 * 24 9 8 44 44 H 1.08998 * 113.60963 * 334.65040 * 24 9 8 45 45 H 1.09003 * 113.54247 * 270.81880 * 25 24 9 46 46 H 1.08999 * 113.66710 * 139.93171 * 25 24 9 47 47 H 1.09002 * 113.61900 * 25.35189 * 26 9 8 48 48 H 1.09005 * 113.61722 * 156.25477 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7996 2.6583 1.1821 6 6 4.7568 2.6856 2.3456 7 8 4.8209 1.7386 3.1005 8 7 5.5411 3.7630 2.5479 9 6 6.3907 3.8372 3.7390 10 6 7.4877 2.7707 3.7537 11 7 8.1868 2.7714 2.4662 12 6 9.2633 1.9814 2.2836 13 8 9.6536 1.2702 3.1852 14 6 9.9821 1.9817 0.9591 15 16 11.3735 0.8260 1.0274 16 6 12.0154 1.0233 -0.6016 17 1 11.5420 1.7084 -1.2893 18 6 13.1296 0.2984 -1.0010 19 7 13.7064 -0.5369 -0.1630 20 14 13.8106 0.5081 -2.7278 21 1 14.2107 1.9233 -2.9335 22 1 14.9938 -0.3720 -2.9036 23 1 12.7682 0.1393 -3.7191 24 6 6.9054 5.2545 4.0413 25 6 5.6280 5.4532 4.8773 26 6 5.6002 3.9259 5.0550 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.7399 0.5065 1.0921 33 1 2.4772 1.2355 2.1130 34 1 3.0943 3.4845 1.2718 35 1 4.3573 2.7563 0.2507 36 1 5.5429 4.4891 1.9048 37 1 7.0401 1.7914 3.9236 38 1 8.1966 2.9896 4.5522 39 1 7.8773 3.3435 1.7467 40 1 9.2935 1.6747 0.1719 41 1 10.3526 2.9847 0.7470 42 1 14.4848 -1.0439 -0.4423 43 1 7.8210 5.2697 4.6325 44 1 6.9573 5.8968 3.1622 45 1 4.7872 5.8412 4.3021 46 1 5.7937 5.9980 5.8067 47 1 4.5999 3.4972 4.9933 48 1 6.1582 3.5773 5.9240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062580863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:18 Heat of formation + Delta-G solvation = -50.711312 kcal Electronic energy + Delta-G solvation = -26855.102041 eV Core-core repulsion = 23036.860551 eV Total energy + Delta-G solvation = -3818.241490 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98659 -38.98470 -38.39826 -36.23007 -34.19229 -33.48010 -32.51296 -32.41352 -29.93646 -27.92898 -26.94919 -26.13639 -25.44621 -23.33577 -22.31650 -20.74765 -20.26004 -20.05597 -19.45724 -17.88971 -17.34208 -16.67253 -16.32437 -16.17901 -15.65195 -15.30070 -15.21345 -14.98071 -14.79236 -14.42843 -14.11504 -13.91144 -13.77762 -13.66891 -13.19322 -12.79328 -12.77469 -12.64701 -12.58533 -12.15865 -12.00834 -11.86726 -11.67079 -11.30342 -11.21933 -11.16809 -11.03189 -11.03059 -11.01861 -10.75752 -10.70800 -9.94490 -9.81577 -9.63514 -9.42433 -9.23774 -9.04825 -8.74646 -8.21116 -6.47695 -6.19767 -3.90229 1.97106 2.43678 2.75414 3.08929 3.17712 3.23971 3.28381 3.32926 3.74045 4.06789 4.21961 4.25278 4.39432 4.41734 4.46911 4.54682 4.65713 4.85993 4.91902 5.02138 5.14977 5.16588 5.21556 5.24708 5.29712 5.32931 5.40702 5.45162 5.51063 5.55080 5.62034 5.65172 5.68967 5.71300 5.82943 5.88476 5.91174 6.02514 6.04294 6.14852 6.32427 6.33662 6.45776 6.70006 7.20564 7.60312 7.77632 8.01752 8.36326 8.69012 9.25047 10.87578 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008527 B = 0.002617 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.766223 B =10697.728506 C =13158.187543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.095 4.095 4 C -0.101 4.101 5 C -0.141 4.141 6 C 0.515 3.485 7 O -0.523 6.523 8 N -0.716 5.716 9 C 0.141 3.859 10 C 0.124 3.876 11 N -0.732 5.732 12 C 0.530 3.470 13 O -0.517 6.517 14 C -0.152 4.152 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.071 0.929 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.132 4.132 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.401 0.599 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.393 0.607 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.269 0.731 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.366 14.044 3.656 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.133 4.133 4 C -0.139 4.139 5 C -0.181 4.181 6 C 0.302 3.698 7 O -0.397 6.397 8 N -0.369 5.369 9 C 0.054 3.946 10 C -0.001 4.001 11 N -0.386 5.386 12 C 0.316 3.684 13 O -0.392 6.392 14 C -0.302 4.302 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.173 4.173 25 C -0.177 4.177 26 C -0.171 4.171 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.236 0.764 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.226 0.774 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.535 12.013 5.771 27.921 hybrid contribution -0.164 1.592 -2.897 3.310 sum -24.700 13.605 2.874 28.345 Atomic orbital electron populations 1.23836 0.95967 1.01742 1.02068 1.22987 0.96039 0.98717 0.99042 1.20798 0.98132 0.95451 0.98879 1.21288 0.97783 0.96260 0.98524 1.21712 0.98120 1.00762 0.97487 1.20736 0.80686 0.81856 0.86571 1.90739 1.67387 1.34391 1.47225 1.45737 1.44184 1.22261 1.24725 1.21580 0.90800 0.95728 0.86532 1.21568 0.92406 0.99673 0.86480 1.45817 1.31322 1.45956 1.15506 1.20280 0.79488 0.78959 0.89652 1.90703 1.65040 1.39788 1.43630 1.23514 1.03833 1.06378 0.96523 1.85425 1.27489 1.51180 1.19147 1.22823 1.16966 1.29868 0.98761 0.91049 1.24991 0.95709 0.94510 0.98385 1.70007 1.20726 1.24407 1.35119 0.86230 0.78367 0.78250 0.82674 1.19962 1.20807 1.19960 1.23304 0.98893 0.94339 1.00785 1.22879 0.97723 0.96594 1.00499 1.23162 1.01297 0.96058 0.96561 0.88585 0.88737 0.87215 0.91584 0.90779 0.90735 0.91114 0.88982 0.88733 0.76417 0.90270 0.90724 0.77380 0.89477 0.89396 0.92132 0.88246 0.90728 0.90221 0.90936 0.90631 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 14.32 29.01 0.42 -0.97 16 2 C -0.15 -1.14 9.52 -36.03 -0.34 -1.48 16 3 C -0.10 -0.64 5.66 -27.88 -0.16 -0.79 16 4 C -0.10 -0.82 4.49 -26.73 -0.12 -0.94 16 5 C -0.14 -0.91 5.70 -27.88 -0.16 -1.07 16 6 C 0.51 4.95 7.32 -10.98 -0.08 4.87 16 7 O -0.52 -7.39 14.07 5.56 0.08 -7.31 16 8 N -0.72 -5.25 4.44 -46.86 -0.21 -5.46 16 9 C 0.14 1.24 0.66 -131.01 -0.09 1.16 16 10 C 0.12 1.62 4.86 -4.04 -0.02 1.60 16 11 N -0.73 -10.32 5.44 -60.29 -0.33 -10.65 16 12 C 0.53 10.37 7.85 -10.99 -0.09 10.28 16 13 O -0.52 -12.38 15.86 5.56 0.09 -12.29 16 14 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 16 C -0.54 -15.41 9.50 30.94 0.29 -15.11 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 20 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 24 C -0.14 -0.90 7.38 -25.83 -0.19 -1.09 16 25 C -0.14 -0.86 8.00 -25.82 -0.21 -1.06 16 26 C -0.13 -1.11 7.03 -25.92 -0.18 -1.30 16 27 H 0.10 0.60 8.06 -52.48 -0.42 0.18 16 28 H 0.09 0.57 7.84 -52.49 -0.41 0.16 16 29 H 0.11 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.07 0.37 7.79 -51.93 -0.40 -0.03 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.40 1.72 8.66 -40.82 -0.35 1.37 16 37 H 0.08 1.29 6.99 -51.93 -0.36 0.93 16 38 H 0.07 1.01 7.95 -51.93 -0.41 0.60 16 39 H 0.39 4.35 7.97 -40.82 -0.33 4.02 16 40 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 41 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 42 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.10 0.71 7.97 -51.93 -0.41 0.30 16 44 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.74 7.55 -51.93 -0.39 0.34 16 48 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 412.74 15.07 6.22 6.22 Total: -1.00 -37.03 412.74 -9.56 -46.59 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.11 Total: 2.77 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -0.80 Total: -6.81 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.20 Total: -41.80 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.17 Total: -19.60 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -37.03 -9.56 -46.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062580863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.122 kcal (2) G-P(sol) polarization free energy of solvation -37.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds