Wall clock time and date at job start Sat Apr 11 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00046 * 2 1 4 4 C 1.52998 * 109.46922 * 124.99647 * 3 2 1 5 5 C 1.53002 * 109.47229 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47270 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99869 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99700 * 180.02562 * 6 5 4 9 9 C 1.46494 * 119.99806 * 174.96614 * 8 6 5 10 10 C 1.53002 * 112.85302 * 65.35704 * 9 8 6 11 11 N 1.46505 * 109.46709 * 49.24994 * 10 9 8 12 12 C 1.34780 * 119.99496 * 174.93116 * 11 10 9 13 13 O 1.21278 * 120.00220 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99587 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47074 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00133 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00168 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99945 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00332 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99960 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46962 * 59.99957 * 20 18 16 22 22 H 1.48500 * 109.47206 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46753 * 300.00377 * 20 18 16 24 24 C 1.53783 * 113.61616 * 196.55811 * 9 8 6 25 25 C 1.53955 * 87.02116 * 89.22409 * 24 9 8 26 26 C 1.53779 * 113.61097 * 294.16445 * 9 8 6 27 27 H 1.08003 * 119.99958 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99947 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.99947 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47025 * 5.00270 * 3 2 1 31 31 H 1.08999 * 109.47228 * 245.00049 * 3 2 1 32 32 H 1.09003 * 109.46762 * 60.00461 * 4 3 2 33 33 H 1.08999 * 109.47497 * 300.00237 * 4 3 2 34 34 H 1.08997 * 109.46705 * 59.99815 * 5 4 3 35 35 H 1.09009 * 109.47031 * 300.00453 * 5 4 3 36 36 H 0.97001 * 120.00151 * 354.95872 * 8 6 5 37 37 H 1.08999 * 109.47038 * 289.25000 * 10 9 8 38 38 H 1.08997 * 109.47120 * 169.24685 * 10 9 8 39 39 H 0.96991 * 120.00017 * 355.20924 * 11 10 9 40 40 H 1.09005 * 109.47344 * 300.00329 * 14 12 11 41 41 H 1.09004 * 109.47329 * 60.00424 * 14 12 11 42 42 H 0.97003 * 120.00362 * 179.97438 * 19 18 16 43 43 H 1.08997 * 113.61785 * 203.74635 * 24 9 8 44 44 H 1.08998 * 113.60963 * 334.65040 * 24 9 8 45 45 H 1.09003 * 113.54247 * 270.81880 * 25 24 9 46 46 H 1.08999 * 113.66710 * 139.93171 * 25 24 9 47 47 H 1.09002 * 113.61900 * 25.35189 * 26 9 8 48 48 H 1.09005 * 113.61722 * 156.25477 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7996 2.6583 1.1821 6 6 4.7568 2.6856 2.3456 7 8 4.8209 1.7386 3.1005 8 7 5.5411 3.7630 2.5479 9 6 6.3907 3.8372 3.7390 10 6 7.4877 2.7707 3.7537 11 7 8.1868 2.7714 2.4662 12 6 9.2633 1.9814 2.2836 13 8 9.6536 1.2702 3.1852 14 6 9.9821 1.9817 0.9591 15 16 11.3735 0.8260 1.0274 16 6 12.0154 1.0233 -0.6016 17 1 11.5420 1.7084 -1.2893 18 6 13.1296 0.2984 -1.0010 19 7 13.7064 -0.5369 -0.1630 20 14 13.8106 0.5081 -2.7278 21 1 14.2107 1.9233 -2.9335 22 1 14.9938 -0.3720 -2.9036 23 1 12.7682 0.1393 -3.7191 24 6 6.9054 5.2545 4.0413 25 6 5.6280 5.4532 4.8773 26 6 5.6002 3.9259 5.0550 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.7399 0.5065 1.0921 33 1 2.4772 1.2355 2.1130 34 1 3.0943 3.4845 1.2718 35 1 4.3573 2.7563 0.2507 36 1 5.5429 4.4891 1.9048 37 1 7.0401 1.7914 3.9236 38 1 8.1966 2.9896 4.5522 39 1 7.8773 3.3435 1.7467 40 1 9.2935 1.6747 0.1719 41 1 10.3526 2.9847 0.7470 42 1 14.4848 -1.0439 -0.4423 43 1 7.8210 5.2697 4.6325 44 1 6.9573 5.8968 3.1622 45 1 4.7872 5.8412 4.3021 46 1 5.7937 5.9980 5.8067 47 1 4.5999 3.4972 4.9933 48 1 6.1582 3.5773 5.9240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062580863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:17 Heat of formation + Delta-G solvation = -76.616618 kcal Electronic energy + Delta-G solvation = -26856.225379 eV Core-core repulsion = 23036.860551 eV Total energy + Delta-G solvation = -3819.364828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.79116 -40.38679 -39.25867 -36.82473 -35.52569 -34.58731 -34.27453 -33.11472 -31.45781 -28.80515 -27.91337 -27.54372 -26.75730 -24.12453 -22.99920 -21.86112 -21.25470 -20.65774 -20.25932 -19.81180 -18.03936 -17.99532 -17.56167 -16.89399 -16.88058 -16.73203 -16.47900 -16.06140 -15.80447 -15.72465 -15.19207 -14.90389 -14.76169 -14.61954 -14.45694 -14.33642 -13.85546 -13.44037 -13.33472 -13.26000 -13.17611 -12.86485 -12.80546 -12.63514 -12.57156 -12.42672 -11.90329 -11.85171 -11.77409 -11.73766 -11.62698 -11.37066 -11.12988 -11.00776 -10.76741 -10.28757 -10.20524 -10.14000 -10.01998 -8.68360 -8.34404 -6.13503 1.25491 1.40629 1.44285 1.46312 1.55938 1.58668 1.69851 2.06364 2.27016 2.32127 2.99535 3.30157 3.38916 3.60416 3.69923 3.81960 3.85623 3.91782 3.99921 4.08099 4.26168 4.31444 4.36957 4.40560 4.46190 4.48516 4.67882 4.70694 4.75045 4.79636 4.80646 4.82728 4.93000 5.03577 5.07289 5.09685 5.11465 5.23004 5.25092 5.38988 5.40932 5.41062 5.67788 5.77794 5.90044 6.19366 6.46496 6.60584 7.06230 7.21806 7.34843 8.74671 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008527 B = 0.002617 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.766223 B =10697.728506 C =13158.187543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C -0.088 4.088 4 C -0.098 4.098 5 C -0.132 4.132 6 C 0.508 3.492 7 O -0.577 6.577 8 N -0.700 5.700 9 C 0.140 3.860 10 C 0.126 3.874 11 N -0.702 5.702 12 C 0.530 3.470 13 O -0.570 6.570 14 C -0.125 4.125 15 S -0.155 6.155 16 C -0.545 4.545 17 H 0.085 0.915 18 C 0.011 3.989 19 N -0.912 5.912 20 Si 1.001 2.999 21 H -0.260 1.260 22 H -0.280 1.280 23 H -0.262 1.262 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.139 4.139 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.421 0.579 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.413 0.587 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.271 0.729 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.059 0.941 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.961 17.761 1.177 32.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.189 4.189 3 C -0.125 4.125 4 C -0.136 4.136 5 C -0.172 4.172 6 C 0.296 3.704 7 O -0.455 6.455 8 N -0.354 5.354 9 C 0.052 3.948 10 C 0.001 3.999 11 N -0.355 5.355 12 C 0.316 3.684 13 O -0.448 6.448 14 C -0.276 4.276 15 S 0.072 5.928 16 C -0.693 4.693 17 H 0.103 0.897 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.822 3.178 21 H -0.184 1.184 22 H -0.205 1.205 23 H -0.186 1.186 24 C -0.163 4.163 25 C -0.160 4.160 26 C -0.178 4.178 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.134 0.866 36 H 0.260 0.740 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.249 0.751 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.101 0.899 47 H 0.078 0.922 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -26.180 15.816 3.255 30.759 hybrid contribution 0.205 0.421 -2.028 2.082 sum -25.975 16.237 1.226 30.657 Atomic orbital electron populations 1.24011 0.95777 1.02596 1.00867 1.23112 0.96579 0.99027 1.00207 1.20755 0.97989 0.95429 0.98290 1.21206 0.97492 0.96427 0.98497 1.21740 0.98006 1.00702 0.96742 1.21400 0.80864 0.81367 0.86727 1.90737 1.68998 1.36513 1.49292 1.45602 1.42928 1.22329 1.24532 1.21564 0.89961 0.95743 0.87503 1.21614 0.93275 0.99582 0.85468 1.45510 1.29211 1.44253 1.16575 1.20176 0.80437 0.79143 0.88675 1.90692 1.66847 1.42262 1.45020 1.23334 1.01178 1.05359 0.97770 1.85671 1.31788 1.54782 1.20574 1.23163 1.17357 1.30209 0.98576 0.89720 1.26174 0.95933 0.93821 1.03396 1.70187 1.21370 1.25608 1.37724 0.84977 0.77651 0.78824 0.76363 1.18407 1.20510 1.18623 1.23282 0.98937 0.92297 1.01760 1.22827 0.97842 0.94222 1.01100 1.23200 1.00127 0.98414 0.96090 0.88286 0.87391 0.88386 0.89728 0.89983 0.93801 0.92878 0.85611 0.86580 0.74005 0.93995 0.91374 0.75060 0.87528 0.86751 0.92008 0.88680 0.88180 0.88636 0.89929 0.92202 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.52 14.32 67.78 0.97 -1.55 16 2 C -0.17 -2.56 9.52 25.65 0.24 -2.31 16 3 C -0.09 -1.03 5.66 29.85 0.17 -0.86 16 4 C -0.10 -1.56 4.49 30.59 0.14 -1.42 16 5 C -0.13 -1.40 5.70 29.85 0.17 -1.22 16 6 C 0.51 9.20 7.32 87.65 0.64 9.84 16 7 O -0.58 -16.97 14.07 -3.01 -0.04 -17.02 16 8 N -0.70 -8.51 4.44 -420.55 -1.87 -10.37 16 9 C 0.14 2.27 0.66 4.13 0.00 2.27 16 10 C 0.13 3.33 4.86 86.38 0.42 3.75 16 11 N -0.70 -19.09 5.44 -463.05 -2.52 -21.61 16 12 C 0.53 20.76 7.85 87.66 0.69 21.45 16 13 O -0.57 -28.39 15.86 -3.02 -0.05 -28.44 16 14 C -0.13 -5.07 6.16 71.23 0.44 -4.63 16 15 S -0.16 -8.82 20.57 -56.49 -1.16 -9.98 16 16 C -0.55 -31.31 9.50 67.95 0.65 -30.67 16 17 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 18 C 0.01 0.65 5.49 84.86 0.47 1.12 16 19 N -0.91 -56.76 13.22 21.65 0.29 -56.47 16 20 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 24 C -0.13 -1.27 7.38 31.18 0.23 -1.04 16 25 C -0.12 -1.13 8.00 31.18 0.25 -0.88 16 26 C -0.14 -2.26 7.03 31.12 0.22 -2.04 16 27 H 0.10 1.17 8.06 -2.91 -0.02 1.14 16 28 H 0.11 1.08 7.84 -2.91 -0.02 1.05 16 29 H 0.10 1.63 8.06 -2.91 -0.02 1.60 16 30 H 0.08 0.70 7.79 -2.39 -0.02 0.68 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 33 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 34 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.42 1.77 8.66 -92.71 -0.80 0.97 16 37 H 0.04 1.46 6.99 -2.39 -0.02 1.44 16 38 H 0.07 1.90 7.95 -2.39 -0.02 1.89 16 39 H 0.41 7.95 7.97 -92.71 -0.74 7.22 16 40 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 41 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 42 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.09 1.12 7.97 -2.39 -0.02 1.10 16 44 H 0.10 0.56 8.09 -2.39 -0.02 0.54 16 45 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.06 1.17 7.55 -2.39 -0.02 1.15 16 48 H 0.09 1.49 8.10 -2.38 -0.02 1.47 16 Total: -1.00 -86.69 412.74 1.78 -84.91 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.59 Total: 21.57 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 5.69 Total: -8.19 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -4.10 Total: -88.46 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.09 Total: -45.46 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.98 kcal Total: -86.69 1.78 -84.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062580863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.298 kcal (2) G-P(sol) polarization free energy of solvation -86.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds