Wall clock time and date at job start Sat Apr 11 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47240 * 2 1 4 4 C 1.32996 * 120.00281 * 123.14359 * 3 2 1 5 5 C 1.50697 * 119.99905 * 185.76697 * 4 3 2 6 6 C 1.47099 * 120.00040 * 5.77251 * 4 3 2 7 7 O 1.21614 * 120.00097 * 260.00448 * 6 4 3 8 8 N 1.34778 * 119.99822 * 79.99307 * 6 4 3 9 9 C 1.46511 * 119.99579 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.46663 * 174.95813 * 9 8 6 11 11 N 1.46494 * 112.85351 * 310.32022 * 10 9 8 12 12 C 1.34774 * 120.00090 * 294.27825 * 11 10 9 13 13 O 1.21280 * 120.00067 * 354.84445 * 12 11 10 14 14 C 1.50697 * 120.00120 * 174.84304 * 12 11 10 15 15 S 1.81002 * 109.47275 * 180.02562 * 14 12 11 16 16 C 1.76202 * 100.00195 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99972 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00086 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99895 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00011 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47307 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47530 * 120.00202 * 20 18 16 23 23 H 1.48503 * 109.47089 * 240.00158 * 20 18 16 24 24 C 1.53789 * 113.68933 * 81.59122 * 10 9 8 25 25 C 1.53780 * 87.08113 * 139.98832 * 24 10 9 26 26 C 1.53781 * 113.61349 * 179.12361 * 10 9 8 27 27 H 1.09005 * 109.46756 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46955 * 299.99887 * 1 2 3 29 29 H 1.08997 * 109.47057 * 60.00387 * 1 2 3 30 30 H 1.08999 * 109.46955 * 240.00112 * 2 1 3 31 31 H 1.09004 * 109.47586 * 120.00016 * 2 1 3 32 32 H 1.07999 * 119.99975 * 303.14609 * 3 2 1 33 33 H 1.09002 * 109.47551 * 270.00338 * 5 4 3 34 34 H 1.08998 * 109.47369 * 30.00822 * 5 4 3 35 35 H 1.09000 * 109.47224 * 150.00487 * 5 4 3 36 36 H 0.96996 * 120.00544 * 0.02562 * 8 6 4 37 37 H 1.08999 * 109.47021 * 54.95826 * 9 8 6 38 38 H 1.08995 * 109.46976 * 294.95530 * 9 8 6 39 39 H 0.96999 * 120.00244 * 114.27645 * 11 10 9 40 40 H 1.09002 * 109.47313 * 60.00018 * 14 12 11 41 41 H 1.09001 * 109.47299 * 299.99951 * 14 12 11 42 42 H 0.96998 * 120.00028 * 180.02562 * 19 18 16 43 43 H 1.08998 * 113.61493 * 254.53341 * 24 10 9 44 44 H 1.08996 * 113.61432 * 25.44402 * 24 10 9 45 45 H 1.09001 * 113.61903 * 220.02130 * 25 24 10 46 46 H 1.09006 * 113.61262 * 89.11226 * 25 24 10 47 47 H 1.09004 * 113.61183 * 334.48205 * 26 10 9 48 48 H 1.08994 * 113.61756 * 105.38468 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8477 1.8379 0.9644 5 6 3.2463 3.2893 1.0387 6 6 3.3606 0.8824 1.9583 7 8 2.8474 0.8156 3.0588 8 7 4.3992 0.0809 1.6492 9 6 4.9096 -0.8711 2.6390 10 6 5.9961 -1.7379 1.9997 11 7 5.5824 -2.3159 0.7187 12 6 4.5835 -3.2198 0.6785 13 8 4.0901 -3.6246 1.7098 14 6 4.0795 -3.7273 -0.6479 15 16 2.7462 -4.9196 -0.3706 16 6 2.3577 -5.3375 -2.0376 17 1 2.9022 -4.8794 -2.8501 18 6 1.3527 -6.2563 -2.3067 19 7 0.6894 -6.8150 -1.3164 20 14 0.9414 -6.6998 -4.0739 21 1 1.8245 -5.9388 -4.9937 22 1 1.1483 -8.1558 -4.2800 23 1 -0.4763 -6.3570 -4.3532 24 6 7.3774 -1.0633 1.9537 25 6 7.9717 -2.4336 2.3193 26 6 6.6155 -2.7615 2.9659 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.7302 2.1004 -0.7831 33 1 4.1527 3.4476 0.4544 34 1 2.4431 3.9077 0.6382 35 1 3.4315 3.5624 2.0776 36 1 4.8087 0.1344 0.7716 37 1 4.0948 -1.5067 2.9856 38 1 5.3301 -0.3261 3.4841 39 1 6.0274 -2.0481 -0.1005 40 1 4.8948 -4.2119 -1.1851 41 1 3.7022 -2.8915 -1.2372 42 1 -0.0127 -7.4573 -1.5044 43 1 7.6606 -0.7156 0.9602 44 1 7.5193 -0.3061 2.7247 45 1 8.7934 -2.3768 3.0332 46 1 8.2039 -3.0539 1.4536 47 1 6.5492 -2.4684 4.0137 48 1 6.2837 -3.7846 2.7898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062653335.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:25 Heat of formation + Delta-G solvation = -51.293903 kcal Electronic energy + Delta-G solvation = -28221.368465 eV Core-core repulsion = 24403.101713 eV Total energy + Delta-G solvation = -3818.266753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75799 -39.55916 -37.84524 -35.77453 -34.42223 -33.04443 -32.45451 -32.22108 -29.39459 -28.01836 -26.99153 -25.97896 -25.51468 -23.78253 -22.46192 -21.74381 -20.77848 -19.55277 -18.94435 -17.87843 -16.55213 -16.41615 -16.32375 -15.73047 -15.57477 -15.27278 -14.83453 -14.68233 -14.46271 -14.23346 -14.05464 -13.71413 -13.46281 -13.32668 -13.11161 -12.80717 -12.75740 -12.56396 -12.54516 -12.38262 -12.20625 -11.96979 -11.70686 -11.12009 -11.09417 -11.04824 -11.01112 -10.98733 -10.89008 -10.78570 -10.51965 -9.88376 -9.83719 -9.41269 -9.10542 -9.03788 -9.02576 -8.94310 -8.25709 -6.52549 -6.24496 -3.94993 1.65580 2.66192 2.88931 3.03282 3.18973 3.20302 3.26758 3.30266 3.62634 4.16706 4.18685 4.40464 4.53859 4.61079 4.68525 4.79091 5.01788 5.10959 5.11249 5.23658 5.25381 5.34295 5.39911 5.41586 5.46158 5.47020 5.51618 5.64149 5.65963 5.68122 5.73974 5.81609 5.85606 5.92669 6.03328 6.05594 6.08261 6.09214 6.17423 6.26652 6.36680 6.40410 6.52175 6.67513 7.45181 7.56723 7.62727 8.20873 8.32271 8.56605 9.21104 10.82841 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009270 B = 0.003891 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.626301 B = 7195.184430 C = 9391.710135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C -0.099 4.099 4 C -0.181 4.181 5 C -0.100 4.100 6 C 0.560 3.440 7 O -0.538 6.538 8 N -0.716 5.716 9 C 0.120 3.880 10 C 0.144 3.856 11 N -0.721 5.721 12 C 0.536 3.464 13 O -0.505 6.505 14 C -0.153 4.153 15 S -0.056 6.056 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.075 3.925 19 N -0.866 5.866 20 Si 0.917 3.083 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.134 4.134 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.399 0.601 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.268 0.732 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.849 18.129 2.095 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.118 4.118 4 C -0.184 4.184 5 C -0.157 4.157 6 C 0.347 3.653 7 O -0.415 6.415 8 N -0.367 5.367 9 C -0.004 4.004 10 C 0.056 3.944 11 N -0.376 5.376 12 C 0.322 3.678 13 O -0.378 6.378 14 C -0.304 4.304 15 S 0.171 5.829 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.743 3.257 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.174 4.174 25 C -0.176 4.176 26 C -0.173 4.173 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.232 0.768 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.233 0.767 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.491 17.265 4.696 21.265 hybrid contribution 0.675 0.272 -3.242 3.323 sum 12.166 17.538 1.454 21.394 Atomic orbital electron populations 1.21639 0.94154 1.02845 1.01425 1.20784 0.97224 0.93071 1.03407 1.23506 0.94774 0.98083 0.95467 1.21465 1.03226 0.96407 0.97272 1.20621 1.01671 0.90704 1.02747 1.18432 0.79273 0.80268 0.87372 1.90820 1.57984 1.69462 1.23279 1.45866 1.34254 1.38817 1.17761 1.21684 0.97498 0.90401 0.90863 1.21454 0.92436 0.94382 0.86131 1.45726 1.38311 1.45414 1.08153 1.20284 0.78394 0.77754 0.91385 1.90713 1.56270 1.55753 1.35028 1.23535 1.05296 1.04876 0.96701 1.85452 1.37771 1.48564 1.11112 1.22894 1.23457 1.29942 0.92105 0.90976 1.24975 0.95093 0.95104 0.98300 1.70024 1.21889 1.27157 1.31102 0.86148 0.78354 0.78368 0.82815 1.19639 1.20560 1.20552 1.23265 0.93909 0.97570 1.02653 1.22828 0.97231 0.96452 1.01094 1.23172 0.94839 1.00749 0.98547 0.91401 0.92813 0.92710 0.90141 0.91156 0.85839 0.91353 0.91157 0.91507 0.76755 0.89620 0.90945 0.76692 0.89428 0.89436 0.92220 0.90896 0.88689 0.91142 0.89981 0.89225 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 37.16 0.37 -1.53 16 2 C -0.11 -1.46 6.20 -27.88 -0.17 -1.63 16 3 C -0.10 -1.09 9.20 -36.13 -0.33 -1.42 16 4 C -0.18 -2.05 5.74 -102.85 -0.59 -2.64 16 5 C -0.10 -0.84 10.03 36.00 0.36 -0.48 16 6 C 0.56 7.91 5.23 -12.67 -0.07 7.84 16 7 O -0.54 -9.95 17.10 5.27 0.09 -9.86 16 8 N -0.72 -8.40 5.38 -61.49 -0.33 -8.73 16 9 C 0.12 1.51 4.92 -4.04 -0.02 1.49 16 10 C 0.14 1.51 0.62 -131.01 -0.08 1.43 16 11 N -0.72 -8.32 4.59 -46.86 -0.22 -8.54 16 12 C 0.54 9.13 7.40 -10.99 -0.08 9.05 16 13 O -0.50 -10.67 13.84 5.56 0.08 -10.60 16 14 C -0.15 -2.90 6.16 36.00 0.22 -2.68 16 15 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 16 C -0.54 -14.86 9.50 30.94 0.29 -14.57 16 17 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -25.79 13.22 55.49 0.73 -25.05 16 20 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.14 -0.98 7.37 -25.92 -0.19 -1.17 16 25 C -0.14 -1.14 7.99 -25.92 -0.21 -1.34 16 26 C -0.13 -1.47 6.95 -25.92 -0.18 -1.66 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.16 6.33 -51.93 -0.33 0.83 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 35 H 0.07 0.61 8.11 -51.93 -0.42 0.18 16 36 H 0.40 3.76 8.13 -40.82 -0.33 3.43 16 37 H 0.09 1.45 7.30 -51.93 -0.38 1.07 16 38 H 0.07 0.84 7.97 -51.93 -0.41 0.42 16 39 H 0.40 3.42 8.66 -40.82 -0.35 3.06 16 40 H 0.09 1.54 8.14 -51.92 -0.42 1.11 16 41 H 0.09 1.53 8.14 -51.91 -0.42 1.10 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 44 H 0.09 0.61 7.98 -51.93 -0.41 0.20 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 48 H 0.08 1.20 7.21 -51.93 -0.37 0.82 16 LS Contribution 411.69 15.07 6.20 6.20 Total: -1.00 -35.46 411.69 -9.50 -44.96 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.05 Total: 6.57 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -0.77 Total: -7.32 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.19 Total: -42.32 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.17 Total: -20.46 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.46 -9.50 -44.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062653335.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.333 kcal (2) G-P(sol) polarization free energy of solvation -35.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds