Wall clock time and date at job start Sat Apr 11 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47240 * 2 1 4 4 C 1.32996 * 120.00281 * 123.14359 * 3 2 1 5 5 C 1.50697 * 119.99905 * 185.76697 * 4 3 2 6 6 C 1.47099 * 120.00040 * 5.77251 * 4 3 2 7 7 O 1.21614 * 120.00097 * 260.00448 * 6 4 3 8 8 N 1.34778 * 119.99822 * 79.99307 * 6 4 3 9 9 C 1.46511 * 119.99579 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.46663 * 174.95813 * 9 8 6 11 11 N 1.46494 * 112.85351 * 310.32022 * 10 9 8 12 12 C 1.34774 * 120.00090 * 294.27825 * 11 10 9 13 13 O 1.21280 * 120.00067 * 354.84445 * 12 11 10 14 14 C 1.50697 * 120.00120 * 174.84304 * 12 11 10 15 15 S 1.81002 * 109.47275 * 180.02562 * 14 12 11 16 16 C 1.76202 * 100.00195 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99972 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00086 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99895 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00011 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47307 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47530 * 120.00202 * 20 18 16 23 23 H 1.48503 * 109.47089 * 240.00158 * 20 18 16 24 24 C 1.53789 * 113.68933 * 81.59122 * 10 9 8 25 25 C 1.53780 * 87.08113 * 139.98832 * 24 10 9 26 26 C 1.53781 * 113.61349 * 179.12361 * 10 9 8 27 27 H 1.09005 * 109.46756 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46955 * 299.99887 * 1 2 3 29 29 H 1.08997 * 109.47057 * 60.00387 * 1 2 3 30 30 H 1.08999 * 109.46955 * 240.00112 * 2 1 3 31 31 H 1.09004 * 109.47586 * 120.00016 * 2 1 3 32 32 H 1.07999 * 119.99975 * 303.14609 * 3 2 1 33 33 H 1.09002 * 109.47551 * 270.00338 * 5 4 3 34 34 H 1.08998 * 109.47369 * 30.00822 * 5 4 3 35 35 H 1.09000 * 109.47224 * 150.00487 * 5 4 3 36 36 H 0.96996 * 120.00544 * 0.02562 * 8 6 4 37 37 H 1.08999 * 109.47021 * 54.95826 * 9 8 6 38 38 H 1.08995 * 109.46976 * 294.95530 * 9 8 6 39 39 H 0.96999 * 120.00244 * 114.27645 * 11 10 9 40 40 H 1.09002 * 109.47313 * 60.00018 * 14 12 11 41 41 H 1.09001 * 109.47299 * 299.99951 * 14 12 11 42 42 H 0.96998 * 120.00028 * 180.02562 * 19 18 16 43 43 H 1.08998 * 113.61493 * 254.53341 * 24 10 9 44 44 H 1.08996 * 113.61432 * 25.44402 * 24 10 9 45 45 H 1.09001 * 113.61903 * 220.02130 * 25 24 10 46 46 H 1.09006 * 113.61262 * 89.11226 * 25 24 10 47 47 H 1.09004 * 113.61183 * 334.48205 * 26 10 9 48 48 H 1.08994 * 113.61756 * 105.38468 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8477 1.8379 0.9644 5 6 3.2463 3.2893 1.0387 6 6 3.3606 0.8824 1.9583 7 8 2.8474 0.8156 3.0588 8 7 4.3992 0.0809 1.6492 9 6 4.9096 -0.8711 2.6390 10 6 5.9961 -1.7379 1.9997 11 7 5.5824 -2.3159 0.7187 12 6 4.5835 -3.2198 0.6785 13 8 4.0901 -3.6246 1.7098 14 6 4.0795 -3.7273 -0.6479 15 16 2.7462 -4.9196 -0.3706 16 6 2.3577 -5.3375 -2.0376 17 1 2.9022 -4.8794 -2.8501 18 6 1.3527 -6.2563 -2.3067 19 7 0.6894 -6.8150 -1.3164 20 14 0.9414 -6.6998 -4.0739 21 1 1.8245 -5.9388 -4.9937 22 1 1.1483 -8.1558 -4.2800 23 1 -0.4763 -6.3570 -4.3532 24 6 7.3774 -1.0633 1.9537 25 6 7.9717 -2.4336 2.3193 26 6 6.6155 -2.7615 2.9659 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.7302 2.1004 -0.7831 33 1 4.1527 3.4476 0.4544 34 1 2.4431 3.9077 0.6382 35 1 3.4315 3.5624 2.0776 36 1 4.8087 0.1344 0.7716 37 1 4.0948 -1.5067 2.9856 38 1 5.3301 -0.3261 3.4841 39 1 6.0274 -2.0481 -0.1005 40 1 4.8948 -4.2119 -1.1851 41 1 3.7022 -2.8915 -1.2372 42 1 -0.0127 -7.4573 -1.5044 43 1 7.6606 -0.7156 0.9602 44 1 7.5193 -0.3061 2.7247 45 1 8.7934 -2.3768 3.0332 46 1 8.2039 -3.0539 1.4536 47 1 6.5492 -2.4684 4.0137 48 1 6.2837 -3.7846 2.7898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062653335.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:25 Heat of formation + Delta-G solvation = -76.472587 kcal Electronic energy + Delta-G solvation = -28222.460295 eV Core-core repulsion = 24403.101713 eV Total energy + Delta-G solvation = -3819.358582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.81720 -40.69330 -39.07343 -36.78551 -35.51209 -34.58853 -34.29145 -33.17653 -30.78821 -29.11188 -27.85183 -27.65199 -26.74942 -24.73149 -23.47425 -22.83276 -21.91826 -20.60875 -20.01430 -19.79351 -17.84146 -17.54059 -17.40847 -16.88290 -16.80556 -16.69853 -16.37249 -16.07471 -15.63526 -15.45043 -15.17212 -14.89606 -14.70032 -14.55049 -14.13341 -14.01819 -13.79945 -13.76800 -13.58434 -13.29378 -13.24663 -13.15434 -12.96743 -12.93201 -12.73174 -12.58174 -12.07598 -11.95912 -11.88977 -11.86336 -11.69914 -11.37758 -11.16085 -11.01212 -10.79583 -10.24825 -10.16384 -10.09285 -9.91103 -8.65558 -8.34670 -6.12000 0.76773 1.26182 1.40416 1.46369 1.56196 1.56740 1.63268 2.10158 2.26626 2.32137 3.00012 3.30273 3.38939 3.57411 3.68644 3.69930 3.89166 3.89567 4.01339 4.05991 4.29132 4.32764 4.40389 4.43195 4.48423 4.50855 4.52102 4.69591 4.75821 4.80191 4.83121 4.85485 4.94098 5.05451 5.06669 5.11301 5.12733 5.16437 5.21823 5.23763 5.37381 5.40119 5.41937 5.63953 5.66298 6.19827 6.44680 6.52098 7.07116 7.15692 7.28532 8.74610 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009270 B = 0.003891 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.626301 B = 7195.184430 C = 9391.710135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.093 4.093 4 C -0.183 4.183 5 C -0.096 4.096 6 C 0.552 3.448 7 O -0.593 6.593 8 N -0.701 5.701 9 C 0.125 3.875 10 C 0.137 3.863 11 N -0.693 5.693 12 C 0.538 3.462 13 O -0.553 6.553 14 C -0.128 4.128 15 S -0.150 6.150 16 C -0.542 4.542 17 H 0.083 0.917 18 C 0.014 3.986 19 N -0.912 5.912 20 Si 0.996 3.004 21 H -0.254 1.254 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.111 4.111 25 C -0.127 4.127 26 C -0.147 4.147 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.030 0.970 32 H 0.161 0.839 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.413 0.587 37 H 0.032 0.968 38 H 0.085 0.915 39 H 0.419 0.581 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.270 0.730 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.094 0.906 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.443 21.073 -0.939 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C -0.112 4.112 4 C -0.185 4.185 5 C -0.153 4.153 6 C 0.341 3.659 7 O -0.474 6.474 8 N -0.352 5.352 9 C 0.000 4.000 10 C 0.050 3.950 11 N -0.348 5.348 12 C 0.324 3.676 13 O -0.430 6.430 14 C -0.280 4.280 15 S 0.077 5.923 16 C -0.690 4.690 17 H 0.101 0.899 18 C -0.190 4.190 19 N -0.549 5.549 20 Si 0.818 3.182 21 H -0.178 1.178 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.149 4.149 25 C -0.165 4.165 26 C -0.186 4.186 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.178 0.822 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.249 0.751 37 H 0.051 0.949 38 H 0.103 0.897 39 H 0.258 0.742 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.131 0.869 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.113 0.887 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.163 20.245 1.607 24.760 hybrid contribution -0.077 -0.636 -2.193 2.284 sum 14.086 19.609 -0.586 24.151 Atomic orbital electron populations 1.21624 0.94154 1.01552 1.02614 1.20722 0.97355 0.94977 1.01455 1.23547 0.94440 0.96715 0.96470 1.21620 1.03379 0.97406 0.96141 1.20682 1.03509 0.88310 1.02757 1.19087 0.79043 0.80548 0.87257 1.90791 1.59679 1.71165 1.25781 1.45757 1.33615 1.37656 1.18145 1.21570 0.96370 0.90184 0.91876 1.21667 0.93560 0.94597 0.85184 1.45375 1.36301 1.43277 1.09860 1.20021 0.79247 0.78452 0.89874 1.90717 1.58246 1.57769 1.36267 1.23360 1.02930 1.03362 0.98306 1.85689 1.42065 1.51958 1.12601 1.23218 1.23638 1.29993 0.92141 0.89885 1.26092 0.94802 0.94856 1.03275 1.70197 1.22735 1.28086 1.33902 0.84949 0.78332 0.78196 0.76763 1.17773 1.20096 1.20068 1.23230 0.89461 0.97230 1.04933 1.22794 0.95850 0.96754 1.01072 1.23257 0.97390 0.98571 0.99389 0.93971 0.93147 0.89913 0.90106 0.95122 0.82160 0.88725 0.89362 0.92546 0.75064 0.94920 0.89701 0.74236 0.87348 0.87443 0.92121 0.87999 0.86918 0.89304 0.89994 0.88739 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.89 71.98 0.71 -3.12 16 2 C -0.11 -2.94 6.20 29.85 0.19 -2.75 16 3 C -0.09 -1.84 9.20 24.52 0.23 -1.62 16 4 C -0.18 -3.83 5.74 -18.71 -0.11 -3.93 16 5 C -0.10 -1.31 10.03 71.23 0.71 -0.59 16 6 C 0.55 15.74 5.23 86.57 0.45 16.20 16 7 O -0.59 -23.09 17.10 -4.07 -0.07 -23.16 16 8 N -0.70 -16.10 5.38 -466.70 -2.51 -18.61 16 9 C 0.13 3.22 4.92 86.38 0.42 3.64 16 10 C 0.14 2.74 0.62 4.13 0.00 2.74 16 11 N -0.69 -15.11 4.59 -420.55 -1.93 -17.04 16 12 C 0.54 18.71 7.40 87.66 0.65 19.35 16 13 O -0.55 -25.04 13.84 -3.03 -0.04 -25.08 16 14 C -0.13 -4.85 6.16 71.23 0.44 -4.41 16 15 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 16 C -0.54 -30.41 9.50 67.95 0.65 -29.76 16 17 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 18 C 0.01 0.81 5.49 84.86 0.47 1.28 16 19 N -0.91 -56.09 13.22 21.65 0.29 -55.80 16 20 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 21 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 24 C -0.11 -1.16 7.37 31.12 0.23 -0.93 16 25 C -0.13 -1.72 7.99 31.12 0.25 -1.48 16 26 C -0.15 -3.23 6.95 31.12 0.22 -3.01 16 27 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.03 1.07 6.33 -2.38 -0.02 1.05 16 32 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.92 8.07 -2.39 -0.02 0.90 16 35 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16 36 H 0.41 6.89 8.13 -92.71 -0.75 6.13 16 37 H 0.03 1.21 7.30 -2.39 -0.02 1.19 16 38 H 0.08 1.96 7.97 -2.39 -0.02 1.94 16 39 H 0.42 5.79 8.66 -92.71 -0.80 4.98 16 40 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 41 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.10 0.59 8.09 -2.39 -0.02 0.57 16 44 H 0.11 0.92 7.98 -2.39 -0.02 0.90 16 45 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.09 1.93 8.10 -2.38 -0.02 1.91 16 48 H 0.05 1.38 7.21 -2.39 -0.02 1.36 16 Total: -1.00 -85.79 411.69 1.51 -84.28 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.59 Total: 28.02 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.50 Total: -8.40 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -4.16 Total: -91.45 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -0.11 Total: -48.23 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -85.79 1.51 -84.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062653335.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.812 kcal (2) G-P(sol) polarization free energy of solvation -85.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds