Wall clock time and date at job start Sat Apr 11 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00160 * 2 1 4 4 C 1.50696 * 119.99867 * 180.02562 * 2 1 3 5 5 C 1.53007 * 109.47151 * 94.99833 * 4 2 1 6 6 C 1.50701 * 109.47254 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99882 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99779 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99770 * 180.02562 * 8 6 5 10 10 C 1.53010 * 109.47083 * 174.96292 * 9 8 6 11 11 N 1.46493 * 112.84911 * 311.52266 * 10 9 8 12 12 C 1.34777 * 120.00129 * 294.02337 * 11 10 9 13 13 O 1.21281 * 120.00173 * 354.96852 * 12 11 10 14 14 C 1.50708 * 120.00141 * 174.97223 * 12 11 10 15 15 S 1.80996 * 109.47252 * 179.97438 * 14 12 11 16 16 C 1.76195 * 99.99884 * 179.97438 * 15 14 12 17 17 H 1.07992 * 120.00607 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99868 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99952 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00064 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47062 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47241 * 119.99767 * 20 18 16 23 23 H 1.48502 * 109.47005 * 239.99996 * 20 18 16 24 24 C 1.53775 * 113.68859 * 82.79138 * 10 9 8 25 25 C 1.53782 * 87.08260 * 139.99290 * 24 10 9 26 26 C 1.53778 * 113.61271 * 180.32315 * 10 9 8 27 27 H 1.08003 * 119.99932 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.00181 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47537 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47032 * 300.00313 * 3 2 1 31 31 H 1.09004 * 109.47111 * 60.00106 * 3 2 1 32 32 H 1.08997 * 109.47435 * 334.99888 * 4 2 1 33 33 H 1.09007 * 109.47184 * 214.99840 * 4 2 1 34 34 H 1.08999 * 109.46682 * 60.00229 * 5 4 2 35 35 H 1.08997 * 109.47068 * 299.99958 * 5 4 2 36 36 H 0.96999 * 120.00349 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.46965 * 54.96849 * 9 8 6 38 38 H 1.08994 * 109.47187 * 294.96475 * 9 8 6 39 39 H 0.97000 * 120.00227 * 114.01862 * 11 10 9 40 40 H 1.09000 * 109.46675 * 59.99418 * 14 12 11 41 41 H 1.09000 * 109.46876 * 299.99651 * 14 12 11 42 42 H 0.96998 * 120.00434 * 179.97438 * 19 18 16 43 43 H 1.09000 * 113.61589 * 254.54306 * 24 10 9 44 44 H 1.09000 * 113.61764 * 25.44064 * 24 10 9 45 45 H 1.08996 * 113.61346 * 220.02295 * 25 24 10 46 46 H 1.08999 * 113.61492 * 89.11500 * 25 24 10 47 47 H 1.08995 * 113.61919 * 334.48913 * 26 10 9 48 48 H 1.09010 * 113.61004 * 105.38860 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4378 6 6 3.1813 -2.9881 -1.4384 7 8 3.4052 -3.5595 -0.3924 8 7 3.6059 -3.5205 -2.6014 9 6 4.3384 -4.7892 -2.6020 10 6 4.5921 -5.2310 -4.0448 11 7 3.3890 -5.1699 -4.8783 12 6 2.3500 -5.9897 -4.6231 13 8 2.4451 -6.8395 -3.7631 14 6 1.0701 -5.8504 -5.4065 15 16 -0.1242 -7.0846 -4.8354 16 6 -1.4845 -6.7043 -5.8887 17 1 -1.4020 -5.9048 -6.6100 18 6 -2.6623 -7.4323 -5.7914 19 7 -2.7628 -8.4071 -4.9125 20 14 -4.1043 -7.0295 -6.9085 21 1 -3.7388 -5.9003 -7.8008 22 1 -4.4423 -8.2201 -7.7291 23 1 -5.2782 -6.6476 -6.0831 24 6 5.8211 -4.5666 -4.6873 25 6 6.1284 -5.9321 -5.3243 26 6 5.3520 -6.5632 -4.1565 27 1 -0.5400 0.9353 0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 3.1351 1.1059 0.0005 30 1 1.8001 1.8766 -0.8899 31 1 1.8002 1.8767 0.8900 32 1 1.4385 -2.0856 0.4334 33 1 2.9742 -1.1991 0.5889 34 1 3.0522 -0.9028 -1.8717 35 1 1.5166 -1.7893 -2.0273 36 1 3.4265 -3.0637 -3.4381 37 1 3.7497 -5.5489 -2.0876 38 1 5.2912 -4.6589 -2.0890 39 1 3.3400 -4.5395 -5.6138 40 1 1.2740 -6.0055 -6.4660 41 1 0.6601 -4.8515 -5.2579 42 1 -3.5860 -8.9156 -4.8442 43 1 5.5698 -3.7930 -5.4129 44 1 6.5704 -4.2432 -3.9648 45 1 7.1892 -6.1827 -5.3293 46 1 5.6532 -6.0784 -6.2943 47 1 5.9730 -6.7858 -3.2888 48 1 4.7219 -7.4017 -4.4535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001063258567.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:28 Heat of formation + Delta-G solvation = -50.940092 kcal Electronic energy + Delta-G solvation = -27205.548341 eV Core-core repulsion = 23387.296931 eV Total energy + Delta-G solvation = -3818.251410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73730 -39.47146 -37.84749 -36.58606 -34.48140 -33.05362 -32.45060 -31.52854 -29.35830 -27.96352 -27.45996 -25.98997 -25.51601 -24.62880 -22.65511 -20.92897 -20.32395 -19.18659 -18.58909 -17.88483 -17.24940 -16.42661 -16.36069 -15.92384 -15.55514 -15.31789 -14.85170 -14.83031 -14.67091 -14.42797 -14.16706 -13.92322 -13.64531 -13.44086 -13.31387 -13.04559 -12.65198 -12.54975 -12.38237 -12.27998 -12.18293 -11.94801 -11.70854 -11.19863 -11.12366 -11.09067 -11.06166 -11.04498 -10.97316 -10.78091 -10.52478 -9.90323 -9.83361 -9.41417 -9.20446 -9.10101 -9.03042 -8.95101 -8.25709 -6.52441 -6.24018 -3.94707 2.00935 2.64628 2.88238 3.03086 3.16655 3.19651 3.26383 3.30176 3.62440 4.16453 4.18475 4.38911 4.51521 4.58040 4.68298 4.69730 4.83226 4.98063 5.02776 5.08995 5.11311 5.24521 5.30539 5.38255 5.39091 5.41700 5.46808 5.51871 5.64170 5.65573 5.67758 5.73003 5.81214 5.81859 5.86024 5.93183 6.00661 6.05321 6.08093 6.09289 6.36697 6.45959 6.67119 6.68422 7.44033 7.57130 7.62203 8.21287 8.32716 8.56375 9.21390 10.83367 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007052 B = 0.003383 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3969.541289 B = 8274.177264 C =11431.064817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 C -0.119 4.119 4 C -0.070 4.070 5 C -0.134 4.134 6 C 0.511 3.489 7 O -0.540 6.540 8 N -0.723 5.723 9 C 0.121 3.879 10 C 0.143 3.857 11 N -0.721 5.721 12 C 0.535 3.465 13 O -0.505 6.505 14 C -0.153 4.153 15 S -0.057 6.057 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.135 4.135 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.398 0.602 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.399 0.601 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.268 0.732 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.921 17.343 1.559 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.130 4.130 3 C -0.176 4.176 4 C -0.108 4.108 5 C -0.174 4.174 6 C 0.298 3.702 7 O -0.417 6.417 8 N -0.375 5.375 9 C -0.003 4.003 10 C 0.055 3.945 11 N -0.377 5.377 12 C 0.322 3.678 13 O -0.377 6.377 14 C -0.304 4.304 15 S 0.169 5.831 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.205 1.205 24 C -0.174 4.174 25 C -0.176 4.176 26 C -0.174 4.174 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.231 0.769 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.233 0.767 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.122 15.350 3.853 23.315 hybrid contribution -1.295 1.724 -2.589 3.370 sum 15.826 17.074 1.264 23.315 Atomic orbital electron populations 1.23754 0.95340 1.02111 1.01779 1.21759 0.95434 0.95584 1.00226 1.20856 1.00050 0.94762 1.01950 1.20434 1.00793 0.94400 0.95143 1.21624 1.01308 0.94833 0.99609 1.20699 0.78996 0.86961 0.83555 1.90710 1.56744 1.62789 1.31491 1.45831 1.58307 1.24276 1.09049 1.21656 0.96977 0.85959 0.95753 1.21462 0.84969 0.98285 0.89744 1.45729 1.15312 1.41815 1.34797 1.20294 0.83908 0.80242 0.83390 1.90713 1.81861 1.32988 1.32174 1.23534 0.97320 1.06862 1.02685 1.85452 1.06823 1.40301 1.50509 1.22893 0.99901 1.22114 1.23502 0.90939 1.24995 0.98246 0.94510 0.95837 1.70023 1.27266 1.19571 1.33317 0.86124 0.81128 0.78376 0.79908 1.19631 1.20556 1.20545 1.23266 0.96433 0.97463 1.00226 1.22828 1.00588 0.95692 0.98521 1.23175 0.98240 0.97162 0.98775 0.88537 0.88140 0.92016 0.91653 0.91671 0.90375 0.90603 0.89049 0.88644 0.76868 0.89699 0.91030 0.76683 0.89371 0.89380 0.92205 0.90904 0.88705 0.91141 0.89977 0.89223 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 13.93 29.02 0.40 -1.38 16 2 C -0.13 -1.18 5.31 -101.07 -0.54 -1.71 16 3 C -0.12 -0.84 10.05 36.00 0.36 -0.48 16 4 C -0.07 -0.73 4.58 -27.88 -0.13 -0.86 16 5 C -0.13 -1.28 5.68 -27.88 -0.16 -1.44 16 6 C 0.51 6.60 7.83 -10.99 -0.09 6.51 16 7 O -0.54 -9.24 15.98 5.56 0.09 -9.15 16 8 N -0.72 -8.00 5.38 -60.29 -0.32 -8.32 16 9 C 0.12 1.50 4.93 -4.03 -0.02 1.48 16 10 C 0.14 1.49 0.63 -131.01 -0.08 1.41 16 11 N -0.72 -8.31 4.53 -46.86 -0.21 -8.52 16 12 C 0.54 9.21 7.40 -10.98 -0.08 9.13 16 13 O -0.50 -10.78 13.86 5.56 0.08 -10.70 16 14 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 15 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 16 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 20 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.14 -0.96 7.37 -25.92 -0.19 -1.16 16 25 C -0.14 -1.13 7.99 -25.92 -0.21 -1.34 16 26 C -0.13 -1.48 6.95 -25.92 -0.18 -1.66 16 27 H 0.10 0.77 8.05 -52.48 -0.42 0.35 16 28 H 0.10 0.99 7.99 -52.48 -0.42 0.57 16 29 H 0.06 0.40 8.00 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.96 7.94 -51.93 -0.41 0.54 16 33 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.40 3.37 8.11 -40.82 -0.33 3.04 16 37 H 0.08 1.42 7.34 -51.93 -0.38 1.04 16 38 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 39 H 0.40 3.36 8.67 -40.82 -0.35 3.00 16 40 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 41 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 44 H 0.09 0.60 7.96 -51.93 -0.41 0.18 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 48 H 0.08 1.20 7.19 -51.92 -0.37 0.83 16 LS Contribution 412.97 15.07 6.22 6.22 Total: -1.00 -35.91 412.97 -9.26 -45.17 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.12 Total: 5.13 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -0.49 Total: -6.99 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.20 Total: -42.14 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.17 Total: -19.86 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.91 -9.26 -45.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001063258567.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.773 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds