Wall clock time and date at job start Sat Apr 11 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00125 * 2 1 4 4 C 1.52994 * 109.47117 * 125.00011 * 3 2 1 5 5 C 1.53007 * 109.47152 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47254 * 179.97438 * 5 4 3 7 7 O 1.21277 * 119.99882 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99779 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99770 * 180.02562 * 8 6 5 10 10 C 1.53010 * 109.47083 * 174.96292 * 9 8 6 11 11 N 1.46493 * 112.84911 * 311.52266 * 10 9 8 12 12 C 1.34777 * 120.00129 * 294.02337 * 11 10 9 13 13 O 1.21281 * 120.00173 * 354.96852 * 12 11 10 14 14 C 1.50708 * 120.00141 * 174.97223 * 12 11 10 15 15 S 1.80996 * 109.47252 * 179.97438 * 14 12 11 16 16 C 1.76195 * 99.99884 * 179.97438 * 15 14 12 17 17 H 1.07992 * 120.00607 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99868 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99952 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00064 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47067 * 89.99943 * 20 18 16 22 22 H 1.48501 * 109.47200 * 210.00084 * 20 18 16 23 23 H 1.48498 * 109.47095 * 330.00052 * 20 18 16 24 24 C 1.53775 * 113.68859 * 82.79138 * 10 9 8 25 25 C 1.53782 * 87.08260 * 139.99290 * 24 10 9 26 26 C 1.53778 * 113.61271 * 180.32315 * 10 9 8 27 27 H 1.08002 * 120.00194 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99946 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.99730 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46989 * 4.99787 * 3 2 1 31 31 H 1.08997 * 109.47020 * 244.99991 * 3 2 1 32 32 H 1.08997 * 109.47374 * 60.00011 * 4 3 2 33 33 H 1.09007 * 109.47244 * 299.99963 * 4 3 2 34 34 H 1.08999 * 109.46682 * 60.00303 * 5 4 3 35 35 H 1.08997 * 109.47068 * 300.00031 * 5 4 3 36 36 H 0.96999 * 120.00349 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.46965 * 54.96849 * 9 8 6 38 38 H 1.08994 * 109.47187 * 294.96475 * 9 8 6 39 39 H 0.97000 * 120.00227 * 114.01862 * 11 10 9 40 40 H 1.09000 * 109.46675 * 59.99418 * 14 12 11 41 41 H 1.09000 * 109.46876 * 299.99651 * 14 12 11 42 42 H 0.96998 * 120.00434 * 179.97438 * 19 18 16 43 43 H 1.09000 * 113.61589 * 254.54306 * 24 10 9 44 44 H 1.09000 * 113.61764 * 25.44064 * 24 10 9 45 45 H 1.08996 * 113.61346 * 220.02295 * 25 24 10 46 46 H 1.08999 * 113.61492 * 89.11500 * 25 24 10 47 47 H 1.08995 * 113.61919 * 334.48913 * 26 10 9 48 48 H 1.09010 * 113.61004 * 105.38860 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6579 1.1812 6 6 4.7570 2.6857 2.3454 7 8 4.8206 1.7390 3.1008 8 7 5.5425 3.7622 2.5466 9 6 6.4728 3.7890 3.6780 10 6 7.3268 5.0566 3.6063 11 7 7.9050 5.2785 2.2787 12 6 8.8225 4.4200 1.7911 13 8 9.2369 3.5164 2.4858 14 6 9.3335 4.5830 0.3827 15 16 10.5459 3.2871 0.0271 16 6 10.9634 3.7059 -1.6327 17 1 10.4946 4.5536 -2.1100 18 6 11.8949 2.9461 -2.3269 19 7 12.4667 1.9132 -1.7450 20 14 12.3380 3.3905 -4.0862 21 1 13.4812 4.3384 -4.0845 22 1 12.7160 2.1604 -4.8273 23 1 11.1691 4.0261 -4.7457 24 6 6.6381 6.2996 4.1939 25 6 8.0036 6.6760 4.7929 26 6 8.3469 5.1776 4.7506 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 3.7399 0.5065 1.0920 33 1 2.4772 1.2356 2.1130 34 1 3.0959 3.4846 1.2706 35 1 4.3584 2.7549 0.2498 36 1 5.4920 4.5192 1.9422 37 1 7.1195 2.9125 3.6375 38 1 5.9099 3.7825 4.6114 39 1 7.6274 6.0432 1.7504 40 1 9.8052 5.5601 0.2782 41 1 8.5014 4.5045 -0.3170 42 1 13.1174 1.3820 -2.2301 43 1 6.2845 7.0011 3.4383 44 1 5.8818 6.0665 4.9434 45 1 7.9406 7.0810 5.8029 46 1 8.6188 7.2839 4.1296 47 1 8.0578 4.6377 5.6522 48 1 9.3729 4.9733 4.4443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064275966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:33 Heat of formation + Delta-G solvation = -51.615281 kcal Electronic energy + Delta-G solvation = -26970.946973 eV Core-core repulsion = 23152.666284 eV Total energy + Delta-G solvation = -3818.280689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.73580 -39.43941 -37.84758 -36.20930 -34.47633 -33.05873 -32.58050 -32.45317 -29.48318 -28.46395 -26.75487 -25.97626 -25.50774 -23.18870 -22.01985 -20.87682 -20.33590 -19.99304 -19.17747 -17.88860 -17.29102 -16.43594 -16.36643 -16.14139 -15.59907 -15.37288 -15.19105 -14.83221 -14.67141 -14.40970 -14.20007 -13.89030 -13.66720 -13.39588 -13.34833 -12.97747 -12.61345 -12.55147 -12.37332 -12.21647 -11.94554 -11.77927 -11.65105 -11.13617 -11.12221 -11.08716 -11.05238 -10.97890 -10.89191 -10.78825 -10.52575 -9.85940 -9.84612 -9.55511 -9.41693 -9.09691 -9.02631 -8.95718 -8.26468 -6.52825 -6.24118 -3.94975 2.04677 2.65679 2.87704 3.02702 3.15284 3.20145 3.25832 3.29148 3.61985 4.16346 4.18364 4.39342 4.52977 4.53917 4.64800 4.69205 4.77938 4.97755 5.01672 5.05798 5.11058 5.23347 5.28085 5.35075 5.38987 5.46227 5.46893 5.51850 5.57062 5.63886 5.65434 5.70125 5.81401 5.85820 5.93040 5.95711 6.04893 6.07874 6.08968 6.15204 6.37681 6.40130 6.53634 6.66943 7.44917 7.56515 7.61883 8.22483 8.32236 8.56016 9.21090 10.83223 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006767 B = 0.003178 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4137.016127 B = 8808.472957 C =12207.591170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.141 4.141 6 C 0.511 3.489 7 O -0.540 6.540 8 N -0.724 5.724 9 C 0.121 3.879 10 C 0.143 3.857 11 N -0.721 5.721 12 C 0.536 3.464 13 O -0.505 6.505 14 C -0.153 4.153 15 S -0.057 6.057 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.135 4.135 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.397 0.603 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.399 0.601 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.269 0.731 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.568 9.328 8.155 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.166 4.166 3 C -0.134 4.134 4 C -0.138 4.138 5 C -0.181 4.181 6 C 0.298 3.702 7 O -0.417 6.417 8 N -0.375 5.375 9 C -0.004 4.004 10 C 0.055 3.945 11 N -0.377 5.377 12 C 0.322 3.678 13 O -0.378 6.378 14 C -0.304 4.304 15 S 0.169 5.831 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.174 4.174 25 C -0.176 4.176 26 C -0.174 4.174 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.231 0.769 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.233 0.767 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.691 6.950 9.850 23.088 hybrid contribution -0.257 2.081 -2.576 3.321 sum -19.949 9.031 7.274 23.074 Atomic orbital electron populations 1.23824 0.95961 1.01689 1.02318 1.22996 0.96022 0.98746 0.98829 1.20810 0.98155 0.95368 0.99024 1.21277 0.97701 0.96415 0.98369 1.21698 0.98164 1.00553 0.97690 1.20707 0.81089 0.82024 0.86422 1.90710 1.68393 1.35072 1.47531 1.45840 1.40767 1.19904 1.31022 1.21652 0.90929 0.98857 0.88918 1.21462 0.94441 0.94218 0.84342 1.45731 1.44534 1.30031 1.17370 1.20294 0.77839 0.81122 0.88571 1.90713 1.55886 1.31839 1.59321 1.23535 1.04922 1.07104 0.94843 1.85454 1.47021 1.33987 1.16596 1.22852 1.29133 1.17758 0.98727 0.90985 1.24995 0.95122 0.94497 0.98968 1.70013 1.26425 1.16481 1.37274 0.86173 0.78797 0.78072 0.82485 1.20269 1.20732 1.19704 1.23266 0.97527 0.96150 1.00445 1.22829 0.96464 0.96997 1.01346 1.23177 1.00802 0.95908 0.97485 0.88649 0.88737 0.87260 0.91567 0.90683 0.90805 0.91193 0.89128 0.88640 0.76891 0.89714 0.91047 0.76682 0.89370 0.89373 0.92145 0.90902 0.88702 0.91135 0.89975 0.89217 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.55 14.32 29.01 0.42 -1.13 16 2 C -0.15 -1.26 9.52 -36.02 -0.34 -1.61 16 3 C -0.10 -0.78 5.66 -27.89 -0.16 -0.94 16 4 C -0.10 -0.98 4.49 -26.73 -0.12 -1.10 16 5 C -0.14 -1.28 5.70 -27.88 -0.16 -1.44 16 6 C 0.51 6.55 7.83 -10.99 -0.09 6.47 16 7 O -0.54 -9.27 15.98 5.56 0.09 -9.18 16 8 N -0.72 -7.97 5.38 -60.29 -0.32 -8.29 16 9 C 0.12 1.50 4.93 -4.03 -0.02 1.48 16 10 C 0.14 1.49 0.63 -131.01 -0.08 1.41 16 11 N -0.72 -8.30 4.53 -46.86 -0.21 -8.51 16 12 C 0.54 9.20 7.40 -10.98 -0.08 9.12 16 13 O -0.50 -10.80 13.86 5.56 0.08 -10.72 16 14 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 15 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 16 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 17 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 20 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 C -0.14 -0.97 7.37 -25.92 -0.19 -1.16 16 25 C -0.14 -1.14 7.99 -25.92 -0.21 -1.34 16 26 C -0.13 -1.49 6.95 -25.92 -0.18 -1.67 16 27 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 28 H 0.09 0.65 7.84 -52.49 -0.41 0.23 16 29 H 0.11 0.93 8.06 -52.49 -0.42 0.50 16 30 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.40 3.32 8.11 -40.82 -0.33 2.99 16 37 H 0.08 1.42 7.34 -51.93 -0.38 1.04 16 38 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 39 H 0.40 3.34 8.67 -40.82 -0.35 2.98 16 40 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 41 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 44 H 0.09 0.60 7.96 -51.93 -0.41 0.19 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 48 H 0.08 1.20 7.19 -51.92 -0.37 0.83 16 LS Contribution 412.82 15.07 6.22 6.22 Total: -1.00 -36.05 412.82 -9.56 -45.60 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.11 Total: 5.11 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -0.79 Total: -7.37 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.20 Total: -42.08 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.17 Total: -19.90 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.05 -9.56 -45.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064275966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.011 kcal (2) G-P(sol) polarization free energy of solvation -36.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds