Wall clock time and date at job start Sat Apr 11 2020 06:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00125 * 2 1 4 4 C 1.52994 * 109.47117 * 125.00011 * 3 2 1 5 5 C 1.53007 * 109.47152 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47254 * 179.97438 * 5 4 3 7 7 O 1.21277 * 119.99882 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99779 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99770 * 180.02562 * 8 6 5 10 10 C 1.53010 * 109.47083 * 174.96292 * 9 8 6 11 11 N 1.46493 * 112.84911 * 311.52266 * 10 9 8 12 12 C 1.34777 * 120.00129 * 294.02337 * 11 10 9 13 13 O 1.21281 * 120.00173 * 354.96852 * 12 11 10 14 14 C 1.50708 * 120.00141 * 174.97223 * 12 11 10 15 15 S 1.80996 * 109.47252 * 179.97438 * 14 12 11 16 16 C 1.76195 * 99.99884 * 179.97438 * 15 14 12 17 17 H 1.07992 * 120.00607 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99868 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99952 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00064 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47067 * 89.99943 * 20 18 16 22 22 H 1.48501 * 109.47200 * 210.00084 * 20 18 16 23 23 H 1.48498 * 109.47095 * 330.00052 * 20 18 16 24 24 C 1.53775 * 113.68859 * 82.79138 * 10 9 8 25 25 C 1.53782 * 87.08260 * 139.99290 * 24 10 9 26 26 C 1.53778 * 113.61271 * 180.32315 * 10 9 8 27 27 H 1.08002 * 120.00194 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99946 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.99730 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46989 * 4.99787 * 3 2 1 31 31 H 1.08997 * 109.47020 * 244.99991 * 3 2 1 32 32 H 1.08997 * 109.47374 * 60.00011 * 4 3 2 33 33 H 1.09007 * 109.47244 * 299.99963 * 4 3 2 34 34 H 1.08999 * 109.46682 * 60.00303 * 5 4 3 35 35 H 1.08997 * 109.47068 * 300.00031 * 5 4 3 36 36 H 0.96999 * 120.00349 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.46965 * 54.96849 * 9 8 6 38 38 H 1.08994 * 109.47187 * 294.96475 * 9 8 6 39 39 H 0.97000 * 120.00227 * 114.01862 * 11 10 9 40 40 H 1.09000 * 109.46675 * 59.99418 * 14 12 11 41 41 H 1.09000 * 109.46876 * 299.99651 * 14 12 11 42 42 H 0.96998 * 120.00434 * 179.97438 * 19 18 16 43 43 H 1.09000 * 113.61589 * 254.54306 * 24 10 9 44 44 H 1.09000 * 113.61764 * 25.44064 * 24 10 9 45 45 H 1.08996 * 113.61346 * 220.02295 * 25 24 10 46 46 H 1.08999 * 113.61492 * 89.11500 * 25 24 10 47 47 H 1.08995 * 113.61919 * 334.48913 * 26 10 9 48 48 H 1.09010 * 113.61004 * 105.38860 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6579 1.1812 6 6 4.7570 2.6857 2.3454 7 8 4.8206 1.7390 3.1008 8 7 5.5425 3.7622 2.5466 9 6 6.4728 3.7890 3.6780 10 6 7.3268 5.0566 3.6063 11 7 7.9050 5.2785 2.2787 12 6 8.8225 4.4200 1.7911 13 8 9.2369 3.5164 2.4858 14 6 9.3335 4.5830 0.3827 15 16 10.5459 3.2871 0.0271 16 6 10.9634 3.7059 -1.6327 17 1 10.4946 4.5536 -2.1100 18 6 11.8949 2.9461 -2.3269 19 7 12.4667 1.9132 -1.7450 20 14 12.3380 3.3905 -4.0862 21 1 13.4812 4.3384 -4.0845 22 1 12.7160 2.1604 -4.8273 23 1 11.1691 4.0261 -4.7457 24 6 6.6381 6.2996 4.1939 25 6 8.0036 6.6760 4.7929 26 6 8.3469 5.1776 4.7506 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 3.7399 0.5065 1.0920 33 1 2.4772 1.2356 2.1130 34 1 3.0959 3.4846 1.2706 35 1 4.3584 2.7549 0.2498 36 1 5.4920 4.5192 1.9422 37 1 7.1195 2.9125 3.6375 38 1 5.9099 3.7825 4.6114 39 1 7.6274 6.0432 1.7504 40 1 9.8052 5.5601 0.2782 41 1 8.5014 4.5045 -0.3170 42 1 13.1174 1.3820 -2.2301 43 1 6.2845 7.0011 3.4383 44 1 5.8818 6.0665 4.9434 45 1 7.9406 7.0810 5.8029 46 1 8.6188 7.2839 4.1296 47 1 8.0578 4.6377 5.6522 48 1 9.3729 4.9733 4.4443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001064275966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:32 Heat of formation + Delta-G solvation = -76.940487 kcal Electronic energy + Delta-G solvation = -26972.045156 eV Core-core repulsion = 23152.666284 eV Total energy + Delta-G solvation = -3819.378872 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76340 -40.50734 -39.05770 -36.90904 -35.50201 -34.59340 -34.28506 -33.32499 -30.80796 -29.50609 -27.71556 -27.48264 -26.72723 -24.04920 -22.91156 -21.95961 -21.31634 -20.67972 -20.18624 -19.82765 -18.22652 -17.82730 -17.34279 -17.00015 -16.88386 -16.68286 -16.41077 -16.17877 -15.92117 -15.55917 -15.28567 -14.93490 -14.77649 -14.57286 -14.33779 -14.27295 -13.88409 -13.60628 -13.27197 -13.22210 -13.16614 -12.90400 -12.74780 -12.62442 -12.57853 -12.45168 -11.88087 -11.85358 -11.77283 -11.71760 -11.64783 -11.36486 -11.14686 -10.92280 -10.78443 -10.26008 -10.19789 -10.08610 -10.06739 -8.66886 -8.34981 -6.12929 1.26102 1.41723 1.41998 1.46569 1.56200 1.63433 1.66121 2.10958 2.26922 2.33264 2.99390 3.30319 3.40042 3.60911 3.71387 3.81984 3.86689 3.90133 4.02176 4.06194 4.30957 4.32974 4.37178 4.41831 4.47292 4.51550 4.64485 4.67563 4.73810 4.79171 4.82651 4.87000 4.92690 5.06691 5.07965 5.12652 5.13759 5.22107 5.25947 5.37391 5.41267 5.45684 5.67398 5.78448 5.90967 6.19229 6.52619 6.56209 7.06383 7.27879 7.29909 8.74139 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006767 B = 0.003178 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4137.016127 B = 8808.472957 C =12207.591170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C -0.088 4.088 4 C -0.097 4.097 5 C -0.132 4.132 6 C 0.501 3.499 7 O -0.594 6.594 8 N -0.711 5.711 9 C 0.126 3.874 10 C 0.137 3.863 11 N -0.692 5.692 12 C 0.538 3.462 13 O -0.555 6.555 14 C -0.128 4.128 15 S -0.156 6.156 16 C -0.543 4.543 17 H 0.084 0.916 18 C 0.011 3.989 19 N -0.913 5.913 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.255 1.255 24 C -0.110 4.110 25 C -0.129 4.129 26 C -0.149 4.149 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.414 0.586 37 H 0.030 0.970 38 H 0.083 0.917 39 H 0.420 0.580 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.270 0.730 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.238 13.246 6.743 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.189 4.189 3 C -0.125 4.125 4 C -0.135 4.135 5 C -0.171 4.171 6 C 0.290 3.710 7 O -0.474 6.474 8 N -0.363 5.363 9 C 0.001 3.999 10 C 0.050 3.950 11 N -0.348 5.348 12 C 0.324 3.676 13 O -0.432 6.432 14 C -0.279 4.279 15 S 0.071 5.929 16 C -0.691 4.691 17 H 0.103 0.897 18 C -0.193 4.193 19 N -0.550 5.550 20 Si 0.820 3.180 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.179 1.179 24 C -0.148 4.148 25 C -0.166 4.166 26 C -0.188 4.188 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.148 0.852 35 H 0.126 0.874 36 H 0.251 0.749 37 H 0.049 0.951 38 H 0.101 0.899 39 H 0.259 0.741 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.079 0.921 43 H 0.121 0.879 44 H 0.130 0.870 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.112 0.888 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.402 10.961 8.421 26.323 hybrid contribution 0.509 0.858 -2.010 2.244 sum -21.893 11.819 6.410 25.692 Atomic orbital electron populations 1.24013 0.95663 1.02671 1.00683 1.23086 0.96609 0.98850 1.00363 1.20754 0.97950 0.95757 0.98063 1.21213 0.97468 0.96049 0.98809 1.21735 0.97959 1.01282 0.96159 1.21496 0.81342 0.81409 0.86783 1.90690 1.70064 1.37027 1.49663 1.45747 1.39653 1.20110 1.30781 1.21506 0.90707 0.97682 0.90054 1.21664 0.94636 0.95418 0.83302 1.45368 1.42335 1.29127 1.17929 1.20031 0.78578 0.81343 0.87670 1.90719 1.57933 1.34267 1.60241 1.23368 1.03285 1.04627 0.96654 1.85698 1.50730 1.38860 1.17628 1.23192 1.29204 1.17993 0.98675 0.89743 1.26152 0.94892 0.94192 1.04100 1.70194 1.27352 1.17996 1.39438 0.84952 0.79053 0.77885 0.76094 1.19328 1.20557 1.17901 1.23222 0.97063 0.93642 1.00828 1.22801 0.96881 0.94301 1.02625 1.23268 0.98637 0.98955 0.97950 0.88060 0.87399 0.88242 0.89552 0.90297 0.93845 0.92398 0.85244 0.87385 0.74922 0.95120 0.89915 0.74111 0.87208 0.87146 0.92091 0.87880 0.86957 0.89399 0.90007 0.88810 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 14.32 67.78 0.97 -1.73 16 2 C -0.17 -2.83 9.52 25.65 0.24 -2.59 16 3 C -0.09 -1.29 5.66 29.85 0.17 -1.13 16 4 C -0.10 -1.91 4.49 30.59 0.14 -1.77 16 5 C -0.13 -2.15 5.70 29.85 0.17 -1.98 16 6 C 0.50 12.70 7.83 87.66 0.69 13.39 16 7 O -0.59 -21.38 15.98 -3.02 -0.05 -21.43 16 8 N -0.71 -14.68 5.38 -463.05 -2.49 -17.17 16 9 C 0.13 3.11 4.93 86.38 0.43 3.53 16 10 C 0.14 2.64 0.63 4.13 0.00 2.65 16 11 N -0.69 -14.54 4.53 -420.54 -1.91 -16.45 16 12 C 0.54 18.46 7.40 87.66 0.65 19.11 16 13 O -0.55 -25.03 13.86 -3.03 -0.04 -25.08 16 14 C -0.13 -4.79 6.16 71.24 0.44 -4.35 16 15 S -0.16 -8.60 20.57 -56.49 -1.16 -9.76 16 16 C -0.54 -30.55 9.50 67.96 0.65 -29.91 16 17 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 18 C 0.01 0.63 5.49 84.86 0.47 1.10 16 19 N -0.91 -56.40 13.22 21.65 0.29 -56.12 16 20 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 24 C -0.11 -1.08 7.37 31.12 0.23 -0.85 16 25 C -0.13 -1.72 7.99 31.12 0.25 -1.47 16 26 C -0.15 -3.25 6.95 31.12 0.22 -3.03 16 27 H 0.10 1.26 8.06 -2.91 -0.02 1.23 16 28 H 0.11 1.20 7.84 -2.91 -0.02 1.18 16 29 H 0.10 1.78 8.06 -2.91 -0.02 1.75 16 30 H 0.09 0.93 7.79 -2.39 -0.02 0.91 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 33 H 0.06 1.26 8.10 -2.38 -0.02 1.24 16 34 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.41 5.57 8.11 -92.71 -0.75 4.82 16 37 H 0.03 1.11 7.34 -2.39 -0.02 1.09 16 38 H 0.08 1.84 7.94 -2.39 -0.02 1.82 16 39 H 0.42 5.32 8.67 -92.71 -0.80 4.52 16 40 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 41 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 42 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.10 0.51 8.09 -2.39 -0.02 0.49 16 44 H 0.11 0.86 7.96 -2.39 -0.02 0.84 16 45 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.09 1.91 8.10 -2.39 -0.02 1.89 16 48 H 0.04 1.35 7.19 -2.38 -0.02 1.33 16 Total: -1.00 -86.48 412.82 1.76 -84.72 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -0.60 Total: 25.07 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.70 Total: -9.04 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -4.11 Total: -89.74 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -0.09 Total: -46.50 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -86.48 1.76 -84.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064275966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.777 kcal (2) G-P(sol) polarization free energy of solvation -86.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds