Wall clock time and date at job start Sat Apr 11 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47322 * 2 1 4 4 N 1.46499 * 109.45755 * 305.32851 * 3 2 1 5 5 C 1.34774 * 120.00014 * 303.26124 * 4 3 2 6 6 O 1.21274 * 120.00347 * 354.80181 * 5 4 3 7 7 C 1.50709 * 119.99870 * 174.53228 * 5 4 3 8 8 S 1.80998 * 109.47086 * 179.97438 * 7 5 4 9 9 C 1.76199 * 99.99888 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00360 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99851 * 180.02562 * 9 8 7 12 12 N 1.31634 * 119.99832 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00229 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46654 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47184 * 119.99850 * 13 11 9 16 16 H 1.48498 * 109.47241 * 240.00142 * 13 11 9 17 17 C 1.53043 * 109.46011 * 65.30338 * 3 2 1 18 18 C 1.53165 * 109.32160 * 181.38863 * 17 3 2 19 19 N 1.46919 * 108.76834 * 305.35108 * 18 17 3 20 20 C 1.34779 * 120.63076 * 233.63228 * 19 18 17 21 21 O 1.21280 * 119.99827 * 179.97438 * 20 19 18 22 22 C 1.50697 * 119.99941 * 359.97438 * 20 19 18 23 23 C 1.53002 * 117.49700 * 248.61804 * 22 20 19 24 24 C 1.52999 * 60.00259 * 252.51054 * 23 22 20 25 25 C 1.46929 * 118.73987 * 53.61567 * 19 18 17 26 26 C 1.53041 * 109.46058 * 185.35738 * 3 2 1 27 27 H 1.08999 * 109.46954 * 294.85805 * 1 2 3 28 28 H 1.09004 * 109.46770 * 54.85631 * 1 2 3 29 29 H 1.08990 * 109.47197 * 174.85112 * 1 2 3 30 30 H 1.08999 * 109.47454 * 239.99301 * 2 1 3 31 31 H 1.09001 * 109.47040 * 119.99641 * 2 1 3 32 32 H 0.97004 * 119.99610 * 123.25233 * 4 3 2 33 33 H 1.08993 * 109.46792 * 299.99367 * 7 5 4 34 34 H 1.09000 * 109.47068 * 59.99378 * 7 5 4 35 35 H 0.97002 * 119.99807 * 179.97438 * 12 11 9 36 36 H 1.09000 * 109.49659 * 301.31973 * 17 3 2 37 37 H 1.08994 * 109.49680 * 61.42453 * 17 3 2 38 38 H 1.09009 * 109.58440 * 185.56670 * 18 17 3 39 39 H 1.08997 * 109.71170 * 65.21154 * 18 17 3 40 40 H 1.08998 * 115.55242 * 34.32825 * 22 20 19 41 41 H 1.08996 * 117.49851 * 0.02562 * 23 22 20 42 42 H 1.08999 * 117.49786 * 145.02255 * 23 22 20 43 43 H 1.09003 * 117.50443 * 252.51466 * 24 23 22 44 44 H 1.09006 * 117.49783 * 107.48478 * 24 23 22 45 45 H 1.08997 * 109.58695 * 186.59873 * 25 19 18 46 46 H 1.08997 * 109.70152 * 66.24832 * 25 19 18 47 47 H 1.08994 * 109.49631 * 298.57789 * 26 3 2 48 48 H 1.09001 * 109.49402 * 58.64161 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4496 2.1689 -1.1269 5 6 1.6113 1.7096 -2.3837 6 8 2.3228 0.7498 -2.5917 7 6 0.9031 2.3851 -3.5297 8 16 1.3195 1.5429 -5.0768 9 6 0.3832 2.5105 -6.2134 10 1 -0.2095 3.3397 -5.8565 11 6 0.4074 2.2069 -7.5676 12 7 1.1295 1.1959 -8.0026 13 14 -0.5846 3.2330 -8.7728 14 1 -1.3045 4.3030 -8.0363 15 1 0.3292 3.8473 -9.7691 16 1 -1.5666 2.3650 -9.4708 17 6 1.6416 2.1242 1.3110 18 6 2.1235 3.5780 1.2931 19 7 3.5668 3.5942 1.0193 20 6 4.4147 4.2421 1.8426 21 8 5.6042 4.2477 1.6059 22 6 3.8848 4.9594 3.0574 23 6 3.9552 6.4878 3.0619 24 6 4.8978 5.6760 3.9526 25 6 4.0684 2.8905 -0.1690 26 6 3.5645 1.4443 -0.1347 27 1 -0.3633 0.4320 0.9324 28 1 -0.3633 0.5916 -0.8404 29 1 -0.3633 -1.0234 -0.0922 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.9423 2.9803 -0.9686 33 1 -0.1740 2.3389 -3.3690 34 1 1.2175 3.4272 -3.5876 35 1 1.1461 0.9835 -8.9489 36 1 0.5570 2.1021 1.4176 37 1 2.1008 1.5989 2.1484 38 1 1.9300 4.0390 2.2618 39 1 1.5975 4.1301 0.5143 40 1 3.0266 4.4934 3.5414 41 1 4.3844 6.9744 2.1861 42 1 3.1431 7.0276 3.5489 43 1 4.7058 5.6816 5.0256 44 1 5.9476 5.6284 3.6628 45 1 5.1584 2.8979 -0.1651 46 1 3.7030 3.3836 -1.0697 47 1 4.0055 0.9254 0.7163 48 1 3.8487 0.9376 -1.0570 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069086704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:40 Heat of formation + Delta-G solvation = -48.229381 kcal Electronic energy + Delta-G solvation = -28219.591271 eV Core-core repulsion = 24401.457406 eV Total energy + Delta-G solvation = -3818.133865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.05982 -39.78579 -37.66043 -36.38037 -35.04678 -32.47040 -32.42642 -31.62889 -30.62679 -28.79513 -26.28038 -25.48624 -24.34185 -23.64489 -22.79625 -21.65886 -21.21972 -19.64030 -18.77962 -18.07090 -17.74753 -16.48352 -16.23882 -15.87402 -15.55896 -15.36010 -14.82023 -14.69725 -14.49462 -14.35966 -14.17299 -13.90893 -13.63142 -13.54866 -13.19238 -12.81941 -12.70024 -12.51001 -12.43975 -12.05957 -11.93117 -11.84838 -11.66715 -11.42502 -11.13582 -11.08556 -11.04114 -10.96835 -10.87305 -10.77656 -10.73801 -10.49724 -9.97477 -9.81640 -9.18702 -9.09281 -9.00581 -8.71307 -8.24640 -6.50978 -6.23433 -3.93552 2.24867 2.69105 3.00698 3.08146 3.20213 3.27009 3.31242 3.49414 3.68735 4.11243 4.18855 4.25769 4.42806 4.48769 4.55797 4.58552 4.73233 4.82121 4.92006 5.09038 5.12014 5.18659 5.21279 5.23922 5.26340 5.33269 5.40283 5.44527 5.52855 5.56746 5.62114 5.68686 5.75811 5.81896 5.82609 5.89025 5.90955 6.01609 6.09303 6.11944 6.22442 6.36497 6.39769 6.72215 7.16262 7.58307 7.72004 7.96180 8.33731 8.62154 9.22308 10.83951 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.002644 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.095274 B =10586.494898 C =11470.321665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.186 3.814 4 N -0.730 5.730 5 C 0.536 3.464 6 O -0.510 6.510 7 C -0.155 4.155 8 S -0.058 6.058 9 C -0.535 4.535 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.139 4.139 18 C 0.106 3.894 19 N -0.605 5.605 20 C 0.543 3.457 21 O -0.542 6.542 22 C -0.197 4.197 23 C -0.152 4.152 24 C -0.149 4.149 25 C 0.116 3.884 26 C -0.144 4.144 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.395 0.605 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.268 0.732 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 6.484 25.838 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.099 3.901 4 N -0.385 5.385 5 C 0.323 3.677 6 O -0.384 6.384 7 C -0.306 4.306 8 S 0.169 5.831 9 C -0.683 4.683 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.744 3.256 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.177 4.177 18 C -0.017 4.017 19 N -0.338 5.338 20 C 0.332 3.668 21 O -0.420 6.420 22 C -0.218 4.218 23 C -0.189 4.189 24 C -0.186 4.186 25 C -0.006 4.006 26 C -0.183 4.183 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.229 0.771 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.142 0.858 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.369 4.758 25.193 25.675 hybrid contribution -1.974 2.064 -0.514 2.902 sum -0.605 6.822 24.678 25.611 Atomic orbital electron populations 1.21729 0.95600 1.01746 1.01373 1.21926 0.96366 0.95450 1.03646 1.20185 0.92609 0.92189 0.85091 1.46155 1.57177 1.29429 1.05765 1.20199 0.80798 0.83830 0.82889 1.90637 1.37105 1.26872 1.83815 1.23551 1.02851 1.04037 1.00114 1.85379 1.63459 1.41826 0.92478 1.22899 1.33164 1.18271 0.93972 0.90972 1.24991 0.95625 0.95473 0.97521 1.70026 1.38093 1.26733 1.15398 0.86128 0.79479 0.79684 0.80275 1.19646 1.20569 1.20572 1.22264 1.02277 0.95589 0.97577 1.21778 0.80625 0.97067 1.02268 1.48044 1.07193 1.52514 1.26029 1.19654 0.85827 0.78346 0.83017 1.90695 1.15796 1.61431 1.74030 1.22236 1.04085 0.96316 0.99117 1.22936 1.02717 0.90364 1.02911 1.22959 0.97379 1.01326 0.96940 1.21591 1.00680 0.91883 0.86473 1.22357 0.94770 0.96535 1.04639 0.93279 0.92312 0.92882 0.89137 0.91751 0.77095 0.89404 0.89559 0.92242 0.89558 0.89956 0.89270 0.91110 0.85781 0.88212 0.87751 0.87936 0.87422 0.89068 0.91099 0.91236 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.41 37.16 0.35 -1.18 16 2 C -0.14 -1.53 4.62 -26.73 -0.12 -1.65 16 3 C 0.19 1.91 0.35 -131.77 -0.05 1.86 16 4 N -0.73 -8.43 3.17 -47.56 -0.15 -8.58 16 5 C 0.54 8.97 6.85 -10.98 -0.08 8.89 16 6 O -0.51 -10.28 12.17 5.56 0.07 -10.22 16 7 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 8 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 9 C -0.53 -14.99 9.50 30.94 0.29 -14.70 16 10 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 11 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 12 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 13 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.14 -0.96 4.76 -26.62 -0.13 -1.09 16 18 C 0.11 0.72 6.07 -3.73 -0.02 0.69 16 19 N -0.60 -6.10 2.97 -172.79 -0.51 -6.62 16 20 C 0.54 6.20 7.48 -10.99 -0.08 6.11 16 21 O -0.54 -8.37 15.67 5.56 0.09 -8.28 16 22 C -0.20 -1.51 5.13 -91.77 -0.47 -1.98 16 23 C -0.15 -1.00 10.23 -26.73 -0.27 -1.27 16 24 C -0.15 -1.07 10.04 -26.73 -0.27 -1.34 16 25 C 0.12 1.41 6.17 -3.71 -0.02 1.39 16 26 C -0.14 -1.72 4.72 -26.61 -0.13 -1.84 16 27 H 0.05 0.40 6.80 -51.93 -0.35 0.05 16 28 H 0.06 0.70 6.96 -51.93 -0.36 0.34 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.35 6.29 -51.93 -0.33 1.02 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.39 3.59 7.18 -40.82 -0.29 3.30 16 33 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 34 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.09 0.48 6.63 -51.93 -0.34 0.14 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.41 5.51 -51.92 -0.29 0.13 16 39 H 0.07 0.45 6.88 -51.93 -0.36 0.09 16 40 H 0.12 0.66 6.56 -51.93 -0.34 0.32 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.11 0.97 7.67 -51.93 -0.40 0.57 16 45 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 46 H 0.07 0.93 7.74 -51.93 -0.40 0.53 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.10 1.53 6.27 -51.93 -0.33 1.21 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -34.79 386.52 -9.56 -44.34 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.50 Total: 3.10 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.87 Total: -6.87 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.07 Total: -40.39 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.15 Total: -18.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.79 -9.56 -44.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069086704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.888 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds