Wall clock time and date at job start Sat Apr 11 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47243 * 2 1 4 4 N 1.46496 * 109.45936 * 305.32867 * 3 2 1 5 5 C 1.34770 * 120.00318 * 303.42031 * 4 3 2 6 6 O 1.21285 * 119.99530 * 354.61005 * 5 4 3 7 7 C 1.50702 * 120.00206 * 174.61098 * 5 4 3 8 8 C 1.52997 * 117.49883 * 248.62062 * 7 5 4 9 9 C 1.53004 * 60.00351 * 252.51359 * 8 7 5 10 10 C 1.53040 * 109.46165 * 185.35518 * 3 2 1 11 11 C 1.53194 * 109.31186 * 178.60272 * 10 3 2 12 12 N 1.46923 * 108.76445 * 54.65584 * 11 10 3 13 13 C 1.34782 * 120.62906 * 126.36355 * 12 11 10 14 14 O 1.21281 * 119.99793 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00123 * 0.02562 * 13 12 11 16 16 S 1.81002 * 109.47102 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99786 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00216 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99782 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00073 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00026 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47282 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47057 * 120.00056 * 21 19 17 24 24 H 1.48503 * 109.47181 * 240.00284 * 21 19 17 25 25 C 1.46921 * 118.73982 * 306.38246 * 12 11 10 26 26 C 1.53047 * 109.45851 * 65.30037 * 3 2 1 27 27 H 1.08996 * 109.47000 * 54.86202 * 1 2 3 28 28 H 1.08999 * 109.46966 * 294.85967 * 1 2 3 29 29 H 1.08998 * 109.47273 * 174.85770 * 1 2 3 30 30 H 1.09007 * 109.47166 * 119.99869 * 2 1 3 31 31 H 1.08997 * 109.47388 * 240.00133 * 2 1 3 32 32 H 0.97003 * 119.99976 * 123.42552 * 4 3 2 33 33 H 1.08993 * 115.54847 * 34.33183 * 7 5 4 34 34 H 1.09000 * 117.49987 * 0.02562 * 8 7 5 35 35 H 1.09000 * 117.50231 * 145.02185 * 8 7 5 36 36 H 1.08994 * 117.49494 * 252.51363 * 9 8 7 37 37 H 1.08996 * 117.49948 * 107.48685 * 9 8 7 38 38 H 1.09003 * 109.49895 * 298.56680 * 10 3 2 39 39 H 1.08995 * 109.49891 * 58.66435 * 10 3 2 40 40 H 1.08996 * 109.59755 * 294.86674 * 11 10 3 41 41 H 1.09005 * 109.69959 * 174.50483 * 11 10 3 42 42 H 1.08995 * 109.47134 * 300.00137 * 15 13 12 43 43 H 1.09004 * 109.47295 * 60.00001 * 15 13 12 44 44 H 0.97002 * 120.00188 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.58620 * 293.82015 * 25 12 11 46 46 H 1.09005 * 109.70550 * 173.46964 * 25 12 11 47 47 H 1.09001 * 109.49855 * 301.33783 * 26 3 2 48 48 H 1.09002 * 109.49551 * 61.40178 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4496 2.1689 -1.1269 5 6 1.6085 1.7079 -2.3833 6 8 2.3205 0.7484 -2.5917 7 6 0.9016 2.3847 -3.5293 8 6 -0.2189 1.6093 -4.2251 9 6 1.1227 1.8140 -4.9317 10 6 3.5644 1.4443 -0.1347 11 6 4.0683 2.8906 -0.1694 12 7 3.5669 3.5944 1.0188 13 6 4.4149 4.2424 1.8420 14 8 3.9887 4.8192 2.8199 15 6 5.8928 4.2501 1.5471 16 16 6.7582 5.1948 2.8257 17 6 8.4159 5.0443 2.2479 18 1 8.6251 4.4880 1.3462 19 6 9.4529 5.6406 2.9518 20 7 9.1981 6.3182 4.0511 21 14 11.2106 5.4805 2.3397 22 1 11.2289 4.6747 1.0925 23 1 11.7637 6.8308 2.0642 24 1 12.0362 4.8092 3.3755 25 6 2.1236 3.5781 1.2930 26 6 1.6414 2.1242 1.3110 27 1 -0.3633 0.5914 -0.8404 28 1 -0.3633 0.4320 0.9324 29 1 -0.3634 -1.0235 -0.0921 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 0.9444 2.9817 -0.9688 33 1 0.7853 3.4646 -3.4380 34 1 -0.4451 0.6098 -3.8536 35 1 -1.0729 2.1790 -4.5915 36 1 1.1512 2.5185 -5.7629 37 1 1.7793 0.9491 -5.0253 38 1 4.0055 0.9255 0.7165 39 1 3.8488 0.9380 -1.0570 40 1 3.7005 3.3843 -1.0689 41 1 5.1583 2.9002 -0.1670 42 1 6.2665 3.2262 1.5368 43 1 6.0668 4.7102 0.5744 44 1 9.9228 6.7347 4.5432 45 1 1.5972 4.1280 0.5128 46 1 1.9280 4.0400 2.2608 47 1 0.5569 2.1018 1.4177 48 1 2.1003 1.5986 2.1485 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069190916.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:42 Heat of formation + Delta-G solvation = -49.620137 kcal Electronic energy + Delta-G solvation = -28195.859059 eV Core-core repulsion = 24377.664886 eV Total energy + Delta-G solvation = -3818.194173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.18832 -39.54068 -38.01099 -36.21992 -34.94782 -32.69563 -32.42683 -31.69568 -30.79991 -28.77894 -25.88333 -25.46034 -24.69175 -23.45294 -22.82103 -22.18020 -20.77534 -19.93355 -18.91745 -17.89139 -17.67657 -16.76460 -16.01390 -15.65801 -15.63163 -15.26297 -15.17734 -14.80275 -14.74100 -14.45575 -13.94753 -13.86010 -13.70255 -13.51642 -13.07307 -12.94988 -12.76786 -12.62947 -12.42582 -12.02536 -11.95287 -11.88017 -11.62420 -11.44121 -11.35978 -11.06771 -11.03661 -11.00506 -10.95855 -10.77268 -10.76220 -10.72545 -9.79319 -9.76717 -9.35847 -9.29676 -9.07168 -8.51024 -8.22131 -6.50004 -6.21587 -3.92034 2.22986 2.80076 2.93875 3.04436 3.21931 3.26746 3.31740 3.48933 3.59998 4.19727 4.21750 4.38549 4.42945 4.47654 4.52107 4.55534 4.76868 4.82622 4.93146 5.04156 5.09063 5.13696 5.14302 5.18328 5.22358 5.32181 5.35274 5.40586 5.53729 5.55844 5.63576 5.67310 5.73108 5.75191 5.77904 5.81035 5.85725 5.88524 5.91643 6.02047 6.07499 6.12897 6.35645 6.63740 7.26771 7.54626 7.60499 7.99739 8.35828 8.55130 9.24009 10.85894 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.002526 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.656612 B =11081.700216 C =11839.172507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.184 3.816 4 N -0.715 5.715 5 C 0.547 3.453 6 O -0.534 6.534 7 C -0.197 4.197 8 C -0.153 4.153 9 C -0.147 4.147 10 C -0.146 4.146 11 C 0.114 3.886 12 N -0.619 5.619 13 C 0.536 3.464 14 O -0.518 6.518 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.533 4.533 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.113 3.887 26 C -0.138 4.138 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.399 0.601 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.268 0.732 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.082 0.918 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.636 -11.213 -15.188 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.098 3.902 4 N -0.367 5.367 5 C 0.334 3.666 6 O -0.411 6.411 7 C -0.218 4.218 8 C -0.190 4.190 9 C -0.185 4.185 10 C -0.185 4.185 11 C -0.010 4.010 12 N -0.355 5.355 13 C 0.324 3.676 14 O -0.392 6.392 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.010 4.010 26 C -0.176 4.176 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.234 0.766 33 H 0.140 0.860 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.100 0.900 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.683 -10.943 -13.706 27.888 hybrid contribution 1.368 -0.272 -1.442 2.006 sum -20.315 -11.215 -15.148 27.712 Atomic orbital electron populations 1.21741 0.95714 1.01417 1.01626 1.21924 0.96184 0.95511 1.03700 1.20313 0.92888 0.91846 0.85147 1.46072 1.55836 1.29051 1.05748 1.19559 0.80572 0.83473 0.83045 1.90647 1.38156 1.27959 1.84301 1.22233 1.05434 1.00245 0.93905 1.22917 0.92356 1.01285 1.02482 1.22944 0.99293 1.03539 0.92694 1.22364 0.94396 0.97197 1.04497 1.21635 1.00264 0.91686 0.87371 1.48109 1.06619 1.54168 1.26618 1.20335 0.88045 0.77337 0.81887 1.90686 1.78232 1.42997 1.27313 1.23551 0.94119 1.05780 1.06641 1.85380 1.01803 1.66407 1.29929 1.22896 0.92002 1.39477 1.13799 0.90906 1.24993 0.99454 0.94515 0.94648 1.70028 1.32828 1.32081 1.15373 0.86119 0.82563 0.78064 0.78770 1.19593 1.20572 1.20557 1.21450 0.80974 0.95670 1.02892 1.22278 1.01919 0.96587 0.96839 0.92830 0.92722 0.92988 0.91158 0.89698 0.76557 0.86038 0.88341 0.87911 0.87997 0.87349 0.90544 0.88602 0.91866 0.89226 0.89273 0.89350 0.92250 0.92303 0.88473 0.89964 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.41 37.16 0.35 -0.72 16 2 C -0.13 -1.17 4.62 -26.73 -0.12 -1.29 16 3 C 0.18 1.60 0.35 -131.78 -0.05 1.55 16 4 N -0.72 -5.37 3.17 -47.57 -0.15 -5.52 16 5 C 0.55 4.89 6.60 -10.99 -0.07 4.82 16 6 O -0.53 -6.48 12.57 5.55 0.07 -6.41 16 7 C -0.20 -1.31 6.19 -91.77 -0.57 -1.88 16 8 C -0.15 -0.85 10.23 -26.73 -0.27 -1.13 16 9 C -0.15 -0.97 10.04 -26.72 -0.27 -1.24 16 10 C -0.15 -1.55 4.72 -26.61 -0.13 -1.67 16 11 C 0.11 1.34 6.09 -3.71 -0.02 1.32 16 12 N -0.62 -8.54 2.97 -172.77 -0.51 -9.05 16 13 C 0.54 10.13 7.72 -10.98 -0.08 10.04 16 14 O -0.52 -11.67 15.28 5.56 0.08 -11.59 16 15 C -0.15 -3.09 4.50 36.00 0.16 -2.93 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.27 9.50 30.94 0.29 -14.98 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 21 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.11 1.23 6.15 -3.71 -0.02 1.21 16 26 C -0.14 -1.17 4.76 -26.61 -0.13 -1.30 16 27 H 0.05 0.39 6.96 -51.93 -0.36 0.03 16 28 H 0.05 0.36 6.80 -51.93 -0.35 0.00 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.08 0.91 6.28 -51.93 -0.33 0.58 16 32 H 0.40 2.31 7.17 -40.82 -0.29 2.01 16 33 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.11 0.89 7.67 -51.93 -0.40 0.49 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.10 1.13 6.28 -51.93 -0.33 0.80 16 40 H 0.06 0.70 7.74 -51.93 -0.40 0.30 16 41 H 0.09 1.13 5.93 -51.93 -0.31 0.82 16 42 H 0.09 1.72 7.69 -51.92 -0.40 1.32 16 43 H 0.09 1.70 7.94 -51.91 -0.41 1.29 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.06 0.51 6.87 -51.93 -0.36 0.16 16 46 H 0.10 1.24 7.01 -51.93 -0.36 0.88 16 47 H 0.08 0.55 6.63 -51.93 -0.34 0.20 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -34.92 387.25 -9.77 -44.69 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.57 Total: 1.14 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -1.03 Total: -6.20 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.07 Total: -40.08 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.15 Total: -18.00 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.92 -9.77 -44.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069190916.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.927 kcal (2) G-P(sol) polarization free energy of solvation -34.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds