Wall clock time and date at job start Sat Apr 11 2020 06:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00134 * 2 1 4 4 C 1.52992 * 109.47592 * 124.99866 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99566 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.50232 * 325.00161 * 9 8 6 11 11 C 1.53039 * 109.49608 * 204.93880 * 9 8 6 12 12 C 1.53042 * 109.53821 * 178.68674 * 11 9 8 13 13 C 1.53190 * 109.31517 * 61.36689 * 12 11 9 14 14 N 1.46931 * 108.77240 * 305.36286 * 13 12 11 15 15 C 1.34771 * 120.63403 * 233.60868 * 14 13 12 16 16 O 1.21283 * 120.00368 * 180.02562 * 15 14 13 17 17 C 1.50709 * 119.99936 * 0.02562 * 15 14 13 18 18 S 1.80992 * 109.47296 * 179.97438 * 17 15 14 19 19 C 1.76196 * 100.00189 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99900 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00443 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00527 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99662 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47391 * 90.00523 * 23 21 19 25 25 H 1.48501 * 109.47114 * 210.00255 * 23 21 19 26 26 H 1.48505 * 109.47339 * 330.00027 * 23 21 19 27 27 C 1.46941 * 118.76361 * 53.58944 * 14 13 12 28 28 H 1.08003 * 120.00157 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99702 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.99702 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47210 * 4.99547 * 3 2 1 32 32 H 1.09001 * 109.46665 * 244.99806 * 3 2 1 33 33 H 1.09002 * 109.47103 * 59.99616 * 4 3 2 34 34 H 1.08998 * 109.46862 * 300.00428 * 4 3 2 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 37 37 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 38 38 H 1.09005 * 109.45857 * 298.70196 * 11 9 8 39 39 H 1.08995 * 109.46233 * 58.68004 * 11 9 8 40 40 H 1.09007 * 109.49703 * 181.31431 * 12 11 9 41 41 H 1.09002 * 109.49759 * 301.37920 * 12 11 9 42 42 H 1.09002 * 109.59086 * 65.14864 * 13 12 11 43 43 H 1.09002 * 109.59063 * 185.58066 * 13 12 11 44 44 H 1.08995 * 109.46818 * 299.99951 * 17 15 14 45 45 H 1.09004 * 109.46798 * 59.99364 * 17 15 14 46 46 H 0.96994 * 120.00581 * 179.97438 * 22 21 19 47 47 H 1.08997 * 109.61092 * 186.64131 * 27 14 13 48 48 H 1.08998 * 109.56104 * 66.21325 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1815 5 6 3.8005 2.6579 1.1812 6 6 4.7570 2.6857 2.3454 7 8 4.8205 1.7390 3.1008 8 7 5.5425 3.7623 2.5465 9 6 6.4727 3.7891 3.6780 10 1 6.0279 3.2702 4.5271 11 6 6.7665 5.2408 4.0634 12 6 7.7124 5.2696 5.2661 13 6 9.0337 4.5930 4.8879 14 7 8.7459 3.2451 4.3787 15 6 9.3564 2.1663 4.9077 16 8 9.1106 1.0590 4.4783 17 6 10.3445 2.3359 6.0330 18 16 10.9861 0.7157 6.5219 19 6 12.0832 1.1980 7.8135 20 1 12.1858 2.2413 8.0734 21 6 12.8165 0.2375 8.4962 22 7 13.6364 0.5978 9.4608 23 14 12.6396 -1.5668 8.0462 24 1 13.6305 -1.9146 6.9962 25 1 12.8798 -2.4030 9.2497 26 1 11.2680 -1.8175 7.5350 27 6 7.7796 3.0949 3.2820 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 3.7400 0.5066 1.0921 34 1 2.4772 1.2356 2.1129 35 1 3.0959 3.4847 1.2704 36 1 4.3583 2.7548 0.2497 37 1 5.4919 4.5193 1.9422 38 1 7.2335 5.7525 3.2218 39 1 5.8347 5.7434 4.3224 40 1 7.9027 6.3034 5.5546 41 1 7.2562 4.7370 6.1006 42 1 9.5349 5.1761 4.1153 43 1 9.6732 4.5223 5.7678 44 1 11.1680 2.9681 5.7011 45 1 9.8489 2.8022 6.8845 46 1 14.1486 -0.0735 9.9381 47 1 7.5914 2.0364 3.1026 48 1 8.1787 3.5555 2.3783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070452939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:50 Heat of formation + Delta-G solvation = -71.515921 kcal Electronic energy + Delta-G solvation = -26643.448990 eV Core-core repulsion = 22824.305345 eV Total energy + Delta-G solvation = -3819.143645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.54064 -39.51761 -37.43801 -36.31547 -34.78220 -32.85151 -32.43138 -32.34958 -30.80700 -28.97423 -27.37774 -25.66487 -25.21423 -23.63527 -22.26362 -21.21988 -20.54943 -20.12461 -19.12743 -17.72438 -17.30612 -16.87005 -16.39648 -16.24430 -15.79239 -15.33938 -15.27474 -14.92939 -14.72902 -14.39754 -14.06239 -13.93297 -13.71919 -13.69097 -13.35962 -13.23921 -12.88612 -12.79626 -12.70794 -12.11655 -12.04957 -11.93758 -11.81847 -11.36431 -11.31912 -11.26630 -11.19922 -11.07442 -10.98793 -10.87841 -10.57327 -10.07037 -9.84047 -9.69257 -9.57183 -9.39808 -8.98441 -8.55113 -8.46059 -6.89725 -6.27343 -3.98795 1.91734 2.39764 2.60732 2.88239 2.98405 3.27113 3.35461 3.53813 3.61533 4.30496 4.35330 4.36071 4.42568 4.52337 4.58460 4.65104 4.66307 4.79590 4.85607 4.87053 5.04408 5.09977 5.11324 5.11917 5.18633 5.20405 5.23502 5.33272 5.39023 5.49068 5.56468 5.59113 5.64655 5.72287 5.77222 5.77903 5.88688 5.95374 5.99144 6.00485 6.14082 6.27263 6.40229 6.56516 7.19707 7.46453 7.95616 7.99664 8.42492 8.46632 9.19132 10.81778 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.002164 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.646906 B =12938.598331 C =14669.184990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.095 4.095 4 C -0.102 4.102 5 C -0.139 4.139 6 C 0.508 3.492 7 O -0.527 6.527 8 N -0.728 5.728 9 C 0.130 3.870 10 H 0.093 0.907 11 C -0.124 4.124 12 C -0.133 4.133 13 C 0.104 3.896 14 N -0.617 5.617 15 C 0.533 3.467 16 O -0.513 6.513 17 C -0.120 4.120 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.106 3.894 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.400 0.600 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.270 0.730 47 H 0.097 0.903 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.244 13.342 -19.427 32.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.132 4.132 4 C -0.140 4.140 5 C -0.179 4.179 6 C 0.294 3.706 7 O -0.402 6.402 8 N -0.381 5.381 9 C 0.025 3.975 10 H 0.111 0.889 11 C -0.163 4.163 12 C -0.171 4.171 13 C -0.019 4.019 14 N -0.354 5.354 15 C 0.320 3.680 16 O -0.387 6.387 17 C -0.271 4.271 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.018 4.018 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.116 0.884 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.424 10.926 -19.358 31.574 hybrid contribution 0.450 1.056 0.232 1.171 sum -21.974 11.982 -19.126 31.500 Atomic orbital electron populations 1.23849 0.95977 1.01797 1.01855 1.22977 0.96051 0.98669 0.99237 1.20792 0.98144 0.95510 0.98747 1.21304 0.97814 0.96252 0.98660 1.21697 0.98154 1.00784 0.97283 1.20829 0.80905 0.82218 0.86614 1.90793 1.67792 1.34771 1.46822 1.46020 1.40880 1.20162 1.31033 1.21324 0.89540 0.96852 0.89809 0.88876 1.21792 1.00335 0.95081 0.99048 1.21901 0.95585 1.01653 0.98010 1.21798 0.97098 0.82731 1.00298 1.48005 1.43646 1.06801 1.36932 1.20335 0.80878 0.83744 0.82995 1.90711 1.62660 1.24331 1.60993 1.23307 1.00018 1.05094 0.98678 1.84849 1.54768 1.05885 1.46083 1.22308 1.27065 0.97923 1.19535 0.89402 1.24699 0.93577 0.99302 0.93672 1.69932 1.25377 1.34762 1.21639 0.86746 0.81703 0.84541 0.78953 1.19212 1.19938 1.15878 1.21841 0.87623 1.03360 0.89025 0.88559 0.88695 0.87256 0.91526 0.90899 0.90793 0.90979 0.88946 0.88787 0.76624 0.91137 0.90988 0.89903 0.90826 0.91216 0.88791 0.88527 0.88465 0.91960 0.88437 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.26 14.32 29.01 0.42 -0.85 16 2 C -0.15 -1.04 9.52 -36.03 -0.34 -1.39 16 3 C -0.09 -0.56 5.66 -27.89 -0.16 -0.72 16 4 C -0.10 -0.79 4.49 -26.74 -0.12 -0.91 16 5 C -0.14 -0.84 5.70 -27.88 -0.16 -1.00 16 6 C 0.51 5.09 7.80 -10.98 -0.09 5.01 16 7 O -0.53 -8.16 15.65 5.56 0.09 -8.07 16 8 N -0.73 -5.59 5.08 -53.69 -0.27 -5.87 16 9 C 0.13 1.30 2.60 -67.81 -0.18 1.12 16 10 H 0.09 1.24 7.58 -51.93 -0.39 0.84 16 11 C -0.12 -0.84 5.35 -26.69 -0.14 -0.99 16 12 C -0.13 -1.03 6.08 -26.61 -0.16 -1.19 16 13 C 0.10 1.04 6.34 -3.71 -0.02 1.01 16 14 N -0.62 -8.64 2.97 -172.75 -0.51 -9.16 16 15 C 0.53 10.13 7.72 -10.98 -0.08 10.04 16 16 O -0.51 -11.90 15.27 5.55 0.08 -11.82 16 17 C -0.12 -2.40 4.50 36.01 0.16 -2.24 16 18 S -0.14 -3.70 18.55 -107.50 -1.99 -5.70 16 19 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 20 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 21 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 22 N -0.88 -26.71 13.97 55.49 0.78 -25.94 16 23 Si 0.86 22.16 27.74 -169.99 -4.71 17.44 16 24 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.23 -6.12 6.74 56.52 0.38 -5.74 16 27 C 0.11 1.33 6.01 -3.70 -0.02 1.31 16 28 H 0.10 0.55 8.06 -52.48 -0.42 0.13 16 29 H 0.09 0.52 7.84 -52.49 -0.41 0.11 16 30 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.07 0.33 7.79 -51.93 -0.40 -0.07 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.40 1.63 8.60 -40.82 -0.35 1.28 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 44 H 0.10 1.77 7.94 -51.92 -0.41 1.36 16 45 H 0.10 1.80 7.69 -51.91 -0.40 1.40 16 46 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.10 1.61 7.00 -51.93 -0.36 1.25 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 404.13 15.07 6.09 6.09 Total: -1.00 -37.39 404.13 -9.26 -46.64 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -8.11 Total: -0.77 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -0.68 Total: -2.87 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.01 Total: -40.96 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.17 Total: -19.88 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.39 -9.26 -46.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.875 kcal (2) G-P(sol) polarization free energy of solvation -37.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds