Wall clock time and date at job start Sat Apr 11 2020 06:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00134 * 2 1 4 4 C 1.52992 * 109.47592 * 124.99866 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99566 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.50232 * 325.00161 * 9 8 6 11 11 C 1.53039 * 109.49608 * 204.93880 * 9 8 6 12 12 C 1.53042 * 109.53821 * 178.68674 * 11 9 8 13 13 C 1.53190 * 109.31517 * 61.36689 * 12 11 9 14 14 N 1.46931 * 108.77240 * 305.36286 * 13 12 11 15 15 C 1.34771 * 120.63403 * 233.60868 * 14 13 12 16 16 O 1.21283 * 120.00368 * 180.02562 * 15 14 13 17 17 C 1.50709 * 119.99936 * 0.02562 * 15 14 13 18 18 S 1.80992 * 109.47296 * 179.97438 * 17 15 14 19 19 C 1.76196 * 100.00189 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99900 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00443 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00527 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99662 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47391 * 90.00523 * 23 21 19 25 25 H 1.48501 * 109.47114 * 210.00255 * 23 21 19 26 26 H 1.48505 * 109.47339 * 330.00027 * 23 21 19 27 27 C 1.46941 * 118.76361 * 53.58944 * 14 13 12 28 28 H 1.08003 * 120.00157 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99702 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.99702 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47210 * 4.99547 * 3 2 1 32 32 H 1.09001 * 109.46665 * 244.99806 * 3 2 1 33 33 H 1.09002 * 109.47103 * 59.99616 * 4 3 2 34 34 H 1.08998 * 109.46862 * 300.00428 * 4 3 2 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 37 37 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 38 38 H 1.09005 * 109.45857 * 298.70196 * 11 9 8 39 39 H 1.08995 * 109.46233 * 58.68004 * 11 9 8 40 40 H 1.09007 * 109.49703 * 181.31431 * 12 11 9 41 41 H 1.09002 * 109.49759 * 301.37920 * 12 11 9 42 42 H 1.09002 * 109.59086 * 65.14864 * 13 12 11 43 43 H 1.09002 * 109.59063 * 185.58066 * 13 12 11 44 44 H 1.08995 * 109.46818 * 299.99951 * 17 15 14 45 45 H 1.09004 * 109.46798 * 59.99364 * 17 15 14 46 46 H 0.96994 * 120.00581 * 179.97438 * 22 21 19 47 47 H 1.08997 * 109.61092 * 186.64131 * 27 14 13 48 48 H 1.08998 * 109.56104 * 66.21325 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1815 5 6 3.8005 2.6579 1.1812 6 6 4.7570 2.6857 2.3454 7 8 4.8205 1.7390 3.1008 8 7 5.5425 3.7623 2.5465 9 6 6.4727 3.7891 3.6780 10 1 6.0279 3.2702 4.5271 11 6 6.7665 5.2408 4.0634 12 6 7.7124 5.2696 5.2661 13 6 9.0337 4.5930 4.8879 14 7 8.7459 3.2451 4.3787 15 6 9.3564 2.1663 4.9077 16 8 9.1106 1.0590 4.4783 17 6 10.3445 2.3359 6.0330 18 16 10.9861 0.7157 6.5219 19 6 12.0832 1.1980 7.8135 20 1 12.1858 2.2413 8.0734 21 6 12.8165 0.2375 8.4962 22 7 13.6364 0.5978 9.4608 23 14 12.6396 -1.5668 8.0462 24 1 13.6305 -1.9146 6.9962 25 1 12.8798 -2.4030 9.2497 26 1 11.2680 -1.8175 7.5350 27 6 7.7796 3.0949 3.2820 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 3.7400 0.5066 1.0921 34 1 2.4772 1.2356 2.1129 35 1 3.0959 3.4847 1.2704 36 1 4.3583 2.7548 0.2497 37 1 5.4919 4.5193 1.9422 38 1 7.2335 5.7525 3.2218 39 1 5.8347 5.7434 4.3224 40 1 7.9027 6.3034 5.5546 41 1 7.2562 4.7370 6.1006 42 1 9.5349 5.1761 4.1153 43 1 9.6732 4.5223 5.7678 44 1 11.1680 2.9681 5.7011 45 1 9.8489 2.8022 6.8845 46 1 14.1486 -0.0735 9.9381 47 1 7.5914 2.0364 3.1026 48 1 8.1787 3.5555 2.3783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070452939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:49 Heat of formation + Delta-G solvation = -97.576039 kcal Electronic energy + Delta-G solvation = -26644.579042 eV Core-core repulsion = 22824.305345 eV Total energy + Delta-G solvation = -3820.273697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53971 -40.61243 -38.54831 -36.89119 -35.76281 -34.69250 -33.57650 -33.15323 -31.93245 -30.17917 -28.00362 -27.85211 -26.27925 -24.41685 -22.93144 -22.15149 -21.28595 -20.70621 -20.41054 -19.52918 -18.34613 -17.98902 -17.28466 -17.20324 -17.08891 -16.78461 -16.48944 -16.03669 -15.70865 -15.54732 -15.18773 -14.98106 -14.88492 -14.62732 -14.43094 -14.35479 -14.22193 -13.73395 -13.57507 -13.38755 -13.31270 -13.04449 -12.73121 -12.66677 -12.62022 -12.46013 -12.07865 -12.01475 -11.89250 -11.78312 -11.66234 -11.63933 -11.19296 -11.07948 -10.85012 -10.53614 -10.39552 -10.19738 -9.65123 -9.03664 -8.53624 -6.24807 0.93444 1.28284 1.39481 1.41716 1.46127 1.50513 1.65298 1.90189 2.22798 2.32371 2.66375 2.84516 3.45980 3.69563 3.79453 3.82463 3.84487 3.94708 4.04690 4.07116 4.15228 4.18524 4.33112 4.35059 4.36276 4.51530 4.54221 4.64740 4.68723 4.74733 4.75773 4.80655 4.90663 4.92805 5.04028 5.07190 5.13017 5.22141 5.26075 5.36922 5.41085 5.56854 5.69130 5.77766 5.89868 6.09157 6.19157 6.57848 6.91887 7.03306 7.31413 8.58517 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.002164 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.646906 B =12938.598331 C =14669.184990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C -0.086 4.086 4 C -0.101 4.101 5 C -0.128 4.128 6 C 0.500 3.500 7 O -0.593 6.593 8 N -0.709 5.709 9 C 0.137 3.863 10 H 0.051 0.949 11 C -0.113 4.113 12 C -0.129 4.129 13 C 0.093 3.907 14 N -0.604 5.604 15 C 0.529 3.471 16 O -0.568 6.568 17 C -0.102 4.102 18 S -0.185 6.185 19 C -0.526 4.526 20 H 0.066 0.934 21 C 0.049 3.951 22 N -0.913 5.913 23 Si 0.911 3.089 24 H -0.261 1.261 25 H -0.257 1.257 26 H -0.243 1.243 27 C 0.106 3.894 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.423 0.577 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.052 0.948 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.277 0.723 47 H 0.049 0.951 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.481 16.648 -21.639 36.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.189 4.189 3 C -0.123 4.123 4 C -0.140 4.140 5 C -0.167 4.167 6 C 0.289 3.711 7 O -0.473 6.473 8 N -0.362 5.362 9 C 0.030 3.970 10 H 0.070 0.930 11 C -0.151 4.151 12 C -0.168 4.168 13 C -0.029 4.029 14 N -0.338 5.338 15 C 0.316 3.684 16 O -0.447 6.447 17 C -0.252 4.252 18 S 0.042 5.958 19 C -0.673 4.673 20 H 0.084 0.916 21 C -0.157 4.157 22 N -0.551 5.551 23 Si 0.733 3.267 24 H -0.186 1.186 25 H -0.181 1.181 26 H -0.167 1.167 27 C -0.018 4.018 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.262 0.738 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.107 0.893 44 H 0.135 0.865 45 H 0.130 0.870 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.673 14.344 -21.600 35.110 hybrid contribution 0.763 0.175 0.875 1.174 sum -22.910 14.519 -20.726 34.136 Atomic orbital electron populations 1.24017 0.95870 1.02572 1.00949 1.23123 0.96538 0.99100 1.00124 1.20748 0.97922 0.95395 0.98243 1.21238 0.97626 0.96569 0.98522 1.21729 0.97868 1.00729 0.96407 1.21659 0.81133 0.81520 0.86808 1.90780 1.69820 1.37308 1.49358 1.45839 1.39423 1.20368 1.30598 1.21119 0.88052 0.98627 0.89179 0.93047 1.21782 1.01331 0.92369 0.99632 1.21918 0.94194 1.02874 0.97814 1.22224 0.98856 0.80653 1.01131 1.48040 1.42283 1.07243 1.36250 1.20183 0.81068 0.84269 0.82837 1.90693 1.64624 1.26616 1.62719 1.23257 1.00962 1.01214 0.99802 1.84863 1.54548 1.11209 1.45218 1.22411 1.27573 0.97025 1.20319 0.91578 1.25485 0.93389 1.03103 0.93681 1.69996 1.26244 1.36311 1.22570 0.85923 0.81245 0.80224 0.79328 1.18599 1.18116 1.16684 1.21948 0.88901 1.01285 0.89664 0.88330 0.87461 0.88234 0.89803 0.89484 0.93567 0.93355 0.85528 0.85878 0.73814 0.87943 0.89057 0.86512 0.92908 0.87897 0.89340 0.86484 0.86976 0.91315 0.93191 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.36 14.32 67.78 0.97 -1.39 16 2 C -0.17 -2.32 9.52 25.64 0.24 -2.08 16 3 C -0.09 -0.88 5.66 29.84 0.17 -0.71 16 4 C -0.10 -1.56 4.49 30.59 0.14 -1.42 16 5 C -0.13 -1.27 5.70 29.85 0.17 -1.09 16 6 C 0.50 9.78 7.80 87.66 0.68 10.47 16 7 O -0.59 -19.66 15.65 -3.03 -0.05 -19.71 16 8 N -0.71 -9.30 5.08 -442.17 -2.25 -11.55 16 9 C 0.14 2.53 2.60 45.07 0.12 2.65 16 10 H 0.05 1.42 7.58 -2.39 -0.02 1.40 16 11 C -0.11 -1.06 5.35 30.62 0.16 -0.89 16 12 C -0.13 -1.56 6.08 30.67 0.19 -1.37 16 13 C 0.09 1.57 6.34 86.36 0.55 2.11 16 14 N -0.60 -16.36 2.97 -818.86 -2.43 -18.80 16 15 C 0.53 20.43 7.72 87.66 0.68 21.11 16 16 O -0.57 -27.60 15.27 -3.04 -0.05 -27.65 16 17 C -0.10 -4.06 4.50 71.24 0.32 -3.74 16 18 S -0.19 -9.82 18.55 -56.49 -1.05 -10.87 16 19 C -0.53 -31.16 10.04 67.95 0.68 -30.48 16 20 H 0.07 4.07 8.03 -2.91 -0.02 4.05 16 21 C 0.05 2.93 5.50 84.86 0.47 3.40 16 22 N -0.91 -56.00 13.97 21.65 0.30 -55.70 16 23 Si 0.91 46.32 27.74 68.60 1.90 48.23 16 24 H -0.26 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.24 -12.58 6.74 99.48 0.67 -11.91 16 27 C 0.11 2.60 6.01 86.36 0.52 3.12 16 28 H 0.10 1.08 8.06 -2.91 -0.02 1.06 16 29 H 0.11 0.99 7.84 -2.91 -0.02 0.97 16 30 H 0.10 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.08 0.59 7.79 -2.39 -0.02 0.57 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 34 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 35 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.42 1.59 8.60 -92.71 -0.80 0.79 16 38 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.09 1.62 5.93 -2.39 -0.01 1.61 16 44 H 0.12 4.18 7.94 -2.40 -0.02 4.16 16 45 H 0.11 4.13 7.69 -2.39 -0.02 4.11 16 46 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 47 H 0.05 1.74 7.00 -2.39 -0.02 1.73 16 48 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -88.76 404.13 2.54 -86.21 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.10 Total: 10.14 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 6.05 Total: -0.32 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -4.38 Total: -86.04 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -0.09 Total: -47.35 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.23 kcal Atomic # 16 Polarization: -9.82 SS G_CDS: -1.05 Total: -10.87 kcal Total: -88.76 2.54 -86.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.362 kcal (2) G-P(sol) polarization free energy of solvation -88.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds