Wall clock time and date at job start Sat Apr 11 2020 06:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00258 * 2 1 4 4 C 1.52999 * 109.47466 * 54.59968 * 3 2 1 5 5 C 1.50700 * 109.47303 * 174.60296 * 3 2 1 6 6 O 1.21285 * 120.00268 * 145.00072 * 5 3 2 7 7 N 1.34778 * 119.99900 * 324.99619 * 5 3 2 8 8 C 1.46496 * 119.99874 * 179.72909 * 7 5 3 9 9 C 1.53004 * 109.47233 * 180.27997 * 8 7 5 10 10 H 1.09003 * 109.47253 * 59.98916 * 9 8 7 11 11 O 1.42904 * 109.46464 * 299.99740 * 9 8 7 12 12 C 1.52995 * 109.47416 * 180.02562 * 9 8 7 13 13 N 1.46499 * 109.47232 * 184.99554 * 12 9 8 14 14 C 1.36941 * 120.00165 * 179.97438 * 13 12 9 15 15 H 1.08004 * 119.99710 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99899 * 180.02562 * 14 13 12 17 17 N 1.31613 * 119.99903 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99615 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46947 * 90.00212 * 18 16 14 20 20 H 1.48496 * 109.47174 * 209.99979 * 18 16 14 21 21 H 1.48500 * 109.47711 * 330.00232 * 18 16 14 22 22 C 1.50699 * 109.46876 * 294.60021 * 3 2 1 23 23 C 1.38216 * 120.01189 * 355.15476 * 22 3 2 24 24 C 1.38231 * 120.02382 * 179.71852 * 23 22 3 25 25 C 1.38265 * 120.04774 * 0.55683 * 24 23 22 26 26 C 1.38168 * 120.02902 * 359.72075 * 25 24 23 27 27 C 1.38443 * 120.01390 * 175.42595 * 22 3 2 28 28 F 1.35099 * 120.02123 * 359.97438 * 27 22 3 29 29 H 1.09004 * 109.46540 * 51.45912 * 1 2 3 30 30 H 1.09001 * 109.47459 * 171.45393 * 1 2 3 31 31 H 1.08999 * 109.47565 * 291.45957 * 1 2 3 32 32 H 1.08998 * 109.47635 * 180.02562 * 4 3 2 33 33 H 1.09006 * 109.46875 * 300.00484 * 4 3 2 34 34 H 1.09002 * 109.46769 * 59.99970 * 4 3 2 35 35 H 0.97003 * 120.00012 * 0.02562 * 7 5 3 36 36 H 1.09007 * 109.47187 * 300.27221 * 8 7 5 37 37 H 1.08996 * 109.47796 * 60.27690 * 8 7 5 38 38 H 0.96702 * 113.99670 * 299.99772 * 11 9 8 39 39 H 1.09004 * 109.46919 * 304.99523 * 12 9 8 40 40 H 1.09000 * 109.47408 * 64.99534 * 12 9 8 41 41 H 0.97003 * 119.99741 * 359.97438 * 13 12 9 42 42 H 0.97008 * 119.99841 * 179.97438 * 17 16 14 43 43 H 1.07993 * 119.99197 * 359.97438 * 23 22 3 44 44 H 1.08000 * 119.97297 * 180.25283 * 24 23 22 45 45 H 1.08002 * 119.98543 * 179.74460 * 25 24 23 46 46 H 1.08008 * 120.01527 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4544 2.1113 1.1758 5 6 3.5068 1.1890 0.1336 6 8 4.2299 1.9762 -0.4393 7 7 4.0416 0.2100 0.8900 8 6 5.4966 0.0932 1.0151 9 6 5.8372 -1.0952 1.9166 10 1 5.4353 -2.0095 1.4799 11 8 5.2626 -0.8924 3.2092 12 6 7.3566 -1.2169 2.0478 13 7 7.6858 -2.4228 2.8117 14 6 8.9947 -2.7416 3.0576 15 1 9.7844 -2.1041 2.6879 16 6 9.3066 -3.8845 3.7810 17 7 8.3443 -4.6615 4.2310 18 14 11.0921 -4.3197 4.1157 19 1 11.5229 -3.6948 5.3920 20 1 11.2319 -5.7947 4.2147 21 1 11.9409 -3.8154 3.0064 22 6 1.6742 2.0048 -1.2919 23 6 0.9955 1.3285 -2.2880 24 6 0.6821 1.9716 -3.4708 25 6 1.0571 3.2884 -3.6633 26 6 1.7407 3.9648 -2.6712 27 6 2.0502 3.3234 -1.4836 28 9 2.7180 3.9839 -0.5125 29 1 -0.3632 0.6404 -0.8039 30 1 -0.3634 -1.0162 -0.1527 31 1 -0.3634 0.3759 0.9564 32 1 1.8974 3.1072 1.1755 33 1 0.3719 2.1955 1.0791 34 1 1.6974 1.6053 2.1102 35 1 3.4633 -0.4199 1.3480 36 1 5.9348 -0.0616 0.0291 37 1 5.8984 1.0074 1.4518 38 1 5.5755 -0.0949 3.6579 39 1 7.8029 -1.2823 1.0555 40 1 7.7480 -0.3410 2.5652 41 1 6.9766 -2.9955 3.1434 42 1 8.5623 -5.4604 4.7362 43 1 0.7063 0.2985 -2.1406 44 1 0.1481 1.4435 -4.2469 45 1 0.8153 3.7886 -4.5895 46 1 2.0339 4.9933 -2.8220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268308041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:24 Heat of formation + Delta-G solvation = -124.215601 kcal Electronic energy + Delta-G solvation = -30071.252069 eV Core-core repulsion = 25683.610018 eV Total energy + Delta-G solvation = -4387.642051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.05696 -40.94380 -39.12728 -38.00490 -37.50763 -34.37890 -33.97036 -32.88050 -31.32584 -31.08130 -29.95769 -28.97794 -27.70528 -25.51909 -24.24192 -23.09773 -22.88361 -21.85250 -21.39114 -20.12528 -18.27769 -18.03933 -17.17774 -17.13895 -16.40544 -16.19527 -16.05152 -15.78698 -15.68196 -15.36459 -15.22448 -14.81525 -14.51540 -14.42286 -14.16540 -13.67385 -13.57726 -13.25687 -13.20841 -12.97303 -12.87249 -12.62277 -12.57158 -12.32589 -12.27248 -11.97376 -11.87389 -11.80463 -11.18139 -10.95544 -10.81046 -10.59922 -10.20877 -10.17665 -10.10075 -9.79765 -9.51891 -9.25582 -9.08091 -8.92801 -8.89139 -6.92902 -5.75168 -3.04778 0.76423 0.88412 2.35797 2.95813 3.28333 3.32543 3.44566 3.49518 3.51378 3.95999 4.08650 4.38588 4.47871 4.53486 4.58977 4.65257 4.76295 4.90103 4.91533 4.93922 4.96738 5.05532 5.19121 5.26029 5.28364 5.35405 5.44033 5.56836 5.65052 5.67066 5.73718 5.77004 5.82354 5.91202 5.97599 6.03141 6.20853 6.39682 6.52726 6.54202 6.56543 6.69285 7.46719 7.69471 7.94904 8.12257 8.42949 9.54559 10.11199 10.47033 11.47214 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.002151 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.825181 B =13014.119832 C =13377.493530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.364 6.364 3 C 0.147 3.853 4 C -0.183 4.183 5 C 0.533 3.467 6 O -0.524 6.524 7 N -0.704 5.704 8 C 0.088 3.912 9 C 0.090 3.910 10 H 0.106 0.894 11 O -0.552 6.552 12 C 0.128 3.872 13 N -0.726 5.726 14 C -0.243 4.243 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.144 4.144 23 C -0.080 4.080 24 C -0.138 4.138 25 C -0.085 4.085 26 C -0.162 4.162 27 C 0.143 3.857 28 F -0.124 7.124 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.411 0.589 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.372 0.628 39 H 0.029 0.971 40 H 0.023 0.977 41 H 0.389 0.611 42 H 0.255 0.745 43 H 0.141 0.859 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.785 16.603 -13.702 31.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.283 6.283 3 C 0.104 3.896 4 C -0.240 4.240 5 C 0.316 3.684 6 O -0.401 6.401 7 N -0.355 5.355 8 C -0.036 4.036 9 C 0.030 3.970 10 H 0.124 0.876 11 O -0.357 6.357 12 C -0.001 4.001 13 N -0.371 5.371 14 C -0.374 4.374 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.578 5.578 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 C -0.146 4.146 23 C -0.098 4.098 24 C -0.157 4.157 25 C -0.103 4.103 26 C -0.181 4.181 27 C 0.123 3.877 28 F -0.102 7.102 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.248 0.752 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.219 0.781 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.223 0.777 42 H 0.065 0.935 43 H 0.159 0.841 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.227 16.449 -14.203 31.086 hybrid contribution 0.789 0.056 0.753 1.092 sum -21.438 16.505 -13.450 30.215 Atomic orbital electron populations 1.23149 0.80418 1.03540 1.01361 1.88014 1.20667 1.24776 1.94803 1.20329 0.91698 0.84666 0.92920 1.22522 1.02340 1.02005 0.97145 1.19709 0.88181 0.81412 0.79117 1.90762 1.60666 1.41943 1.46684 1.45812 1.08178 1.31703 1.49846 1.22152 0.80081 0.99890 1.01483 1.22399 0.95055 0.96633 0.82925 0.87635 1.86585 1.69346 1.49072 1.30669 1.21198 0.91074 0.91787 0.96069 1.42242 1.05719 1.24862 1.64243 1.19220 0.84077 1.05699 1.28420 0.91213 1.24763 0.97477 0.97768 1.00913 1.69679 1.30446 1.15981 1.41719 0.86173 0.84503 0.77357 0.78041 1.21694 1.21737 1.20754 1.19975 1.03573 0.93469 0.97538 1.21067 0.96352 1.00327 0.92030 1.21171 1.01812 0.95148 0.97520 1.21057 0.96307 0.94552 0.98370 1.21155 1.02465 1.01499 0.92978 1.17342 0.93653 0.89864 0.86817 1.91497 1.77608 1.80242 1.60881 0.92468 0.88745 0.93140 0.89544 0.90644 0.90194 0.75234 0.90361 0.90944 0.78066 0.95363 0.95908 0.77709 0.93482 0.84091 0.85149 0.84982 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.05 101.05 0.91 0.99 16 2 O -0.36 -3.62 8.96 -35.23 -0.32 -3.93 16 3 C 0.15 1.62 0.79 -92.92 -0.07 1.55 16 4 C -0.18 -1.69 7.81 37.16 0.29 -1.40 16 5 C 0.53 7.44 6.61 -10.98 -0.07 7.37 16 6 O -0.52 -8.91 14.08 5.55 0.08 -8.83 16 7 N -0.70 -9.19 5.36 -60.29 -0.32 -9.51 16 8 C 0.09 1.23 5.34 -4.04 -0.02 1.20 16 9 C 0.09 1.42 3.09 -26.73 -0.08 1.34 16 10 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 11 O -0.55 -8.86 13.03 -35.23 -0.46 -9.31 16 12 C 0.13 2.51 5.90 -4.04 -0.02 2.49 16 13 N -0.73 -18.61 5.55 -59.91 -0.33 -18.94 16 14 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 15 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 18 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.14 -1.57 4.29 -104.55 -0.45 -2.02 16 23 C -0.08 -0.71 7.64 -39.59 -0.30 -1.01 16 24 C -0.14 -1.01 10.04 -39.57 -0.40 -1.41 16 25 C -0.08 -0.62 10.04 -39.60 -0.40 -1.02 16 26 C -0.16 -1.48 10.03 -39.52 -0.40 -1.88 16 27 C 0.14 1.65 6.18 -39.42 -0.24 1.40 16 28 F -0.12 -1.63 13.15 2.25 0.03 -1.61 16 29 H 0.06 0.33 5.14 -51.93 -0.27 0.07 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.29 6.85 -51.93 -0.36 -0.07 16 32 H 0.09 0.88 5.96 -51.93 -0.31 0.57 16 33 H 0.07 0.55 6.68 -51.93 -0.35 0.20 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.41 5.02 7.78 -40.82 -0.32 4.71 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.37 4.95 9.04 45.56 0.41 5.37 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.39 10.64 7.67 -40.82 -0.31 10.33 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.14 1.08 5.66 -52.49 -0.30 0.78 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 46 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -34.93 378.43 -6.99 -41.92 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -5.57 Total: 14.65 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.50 Total: 0.08 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.07 Total: -56.30 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.70 Total: -22.08 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.03 Total: -1.61 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.93 -6.99 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268308041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.294 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds