Wall clock time and date at job start Sat Apr 11 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42899 * 113.99939 * 2 1 4 4 C 1.52996 * 109.46844 * 186.07983 * 3 2 1 5 5 C 1.50696 * 109.47184 * 306.08093 * 3 2 1 6 6 O 1.21285 * 119.99986 * 145.00028 * 5 3 2 7 7 N 1.34773 * 120.00410 * 324.99872 * 5 3 2 8 8 C 1.46492 * 120.00579 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47514 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.46838 * 305.00219 * 9 8 7 11 11 O 1.42899 * 109.47114 * 64.99994 * 9 8 7 12 12 C 1.53002 * 109.47339 * 185.00023 * 9 8 7 13 13 N 1.46499 * 109.47189 * 179.97438 * 12 9 8 14 14 C 1.36932 * 119.99857 * 179.97438 * 13 12 9 15 15 H 1.08007 * 120.00268 * 0.02562 * 14 13 12 16 16 C 1.38809 * 119.99934 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99952 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00079 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46843 * 90.00129 * 18 16 14 20 20 H 1.48500 * 109.47137 * 209.99853 * 18 16 14 21 21 H 1.48497 * 109.47197 * 330.00558 * 18 16 14 22 22 C 1.50709 * 109.46893 * 66.08093 * 3 2 1 23 23 C 1.38214 * 120.01257 * 1.05308 * 22 3 2 24 24 C 1.38230 * 120.02576 * 179.97438 * 23 22 3 25 25 C 1.38267 * 120.04769 * 0.02562 * 24 23 22 26 26 C 1.38172 * 120.02474 * 359.95930 * 25 24 23 27 27 C 1.38431 * 120.00895 * 181.28519 * 22 3 2 28 28 F 1.35103 * 120.03150 * 0.03941 * 27 22 3 29 29 H 1.08995 * 109.46532 * 187.35919 * 1 2 3 30 30 H 1.09001 * 109.47141 * 307.36138 * 1 2 3 31 31 H 1.08999 * 109.47041 * 67.36128 * 1 2 3 32 32 H 1.09004 * 109.47092 * 299.99749 * 4 3 2 33 33 H 1.08999 * 109.47437 * 60.00178 * 4 3 2 34 34 H 1.09007 * 109.46928 * 180.02562 * 4 3 2 35 35 H 0.97003 * 119.99403 * 0.02562 * 7 5 3 36 36 H 1.09004 * 109.47195 * 300.00451 * 8 7 5 37 37 H 1.09004 * 109.47036 * 59.99928 * 8 7 5 38 38 H 0.96703 * 113.99781 * 60.00141 * 11 9 8 39 39 H 1.09003 * 109.46911 * 299.99954 * 12 9 8 40 40 H 1.09004 * 109.47208 * 59.99730 * 12 9 8 41 41 H 0.96993 * 120.00007 * 0.02562 * 13 12 9 42 42 H 0.97001 * 119.99723 * 179.97438 * 17 16 14 43 43 H 1.07999 * 119.98930 * 359.95248 * 23 22 3 44 44 H 1.07995 * 119.97197 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.98439 * 179.97438 * 25 24 23 46 46 H 1.08008 * 120.00907 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5281 1.1879 -0.1528 5 6 1.4502 2.1047 -1.1482 6 8 1.2643 3.2967 -1.0237 7 7 1.1560 1.4950 -2.3136 8 6 0.6120 2.2720 -3.4300 9 6 0.3676 1.3470 -4.6240 10 1 1.2894 0.8198 -4.8697 11 8 -0.6492 0.3994 -4.2921 12 6 -0.0820 2.1767 -5.8283 13 7 -0.3154 1.2911 -6.9717 14 6 -0.7278 1.8127 -8.1687 15 1 -0.8806 2.8771 -8.2701 16 6 -0.9495 0.9736 -9.2520 17 7 -0.7638 -0.3236 -9.1284 18 14 -1.5128 1.6851 -10.8848 19 1 -0.3272 2.0283 -11.7105 20 1 -2.3420 0.6832 -11.6017 21 1 -2.3169 2.9094 -10.6403 22 6 1.6883 1.9987 1.2989 23 6 0.9524 1.3436 2.2682 24 6 0.6573 1.9789 3.4599 25 6 1.0975 3.2705 3.6833 26 6 1.8336 3.9271 2.7158 27 6 2.1255 3.2935 1.5196 28 9 2.8402 3.9368 0.5706 29 1 -0.3632 -1.0192 0.1316 30 1 -0.3633 0.6236 0.8168 31 1 -0.3633 0.3956 -0.9485 32 1 3.9332 0.6098 0.6778 33 1 3.7610 0.6865 -1.0922 34 1 3.9715 2.1837 -0.1523 35 1 1.3044 0.5415 -2.4130 36 1 -0.3292 2.7316 -3.1283 37 1 1.3222 3.0495 -3.7116 38 1 -1.4992 0.7990 -4.0620 39 1 -1.0038 2.7040 -5.5825 40 1 0.6936 2.8996 -6.0815 41 1 -0.1786 0.3352 -6.8806 42 1 -0.9191 -0.9100 -9.8853 43 1 0.6074 0.3350 2.0944 44 1 0.0819 1.4664 4.2165 45 1 0.8661 3.7660 4.6146 46 1 2.1777 4.9359 2.8908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268308043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:30 Heat of formation + Delta-G solvation = -120.159225 kcal Electronic energy + Delta-G solvation = -30337.090599 eV Core-core repulsion = 25949.624446 eV Total energy + Delta-G solvation = -4387.466153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.96000 -41.10433 -39.09261 -37.87590 -37.46644 -34.46776 -34.00993 -33.11438 -31.34660 -31.11770 -30.04753 -29.09358 -26.73673 -25.83603 -24.53426 -23.09438 -22.94332 -21.94069 -21.44334 -20.14805 -18.38548 -17.94795 -17.17038 -17.08660 -16.42185 -16.20109 -16.12574 -15.66148 -15.55991 -15.46863 -15.19957 -14.95715 -14.49063 -14.29466 -14.13369 -13.72167 -13.64752 -13.23295 -13.01799 -12.85625 -12.78766 -12.67373 -12.46648 -12.38585 -12.30893 -12.08747 -11.88334 -11.75287 -11.36218 -10.97250 -10.83459 -10.66462 -10.56937 -10.18833 -9.90062 -9.76764 -9.49447 -9.24354 -9.15165 -8.92103 -8.89747 -6.95703 -5.77558 -3.07418 0.77395 0.89748 2.35968 2.82921 3.27461 3.30488 3.42704 3.47727 3.49551 4.00738 4.10288 4.37171 4.45904 4.53713 4.55765 4.69692 4.69965 4.84398 4.92041 5.00302 5.07347 5.12567 5.21211 5.28297 5.32038 5.46648 5.48264 5.53880 5.58432 5.68893 5.74725 5.75599 5.82925 5.91497 5.92374 6.03687 6.16953 6.31018 6.48226 6.55619 6.56165 6.64625 7.36418 7.66919 7.89865 8.03313 8.40549 9.52284 10.08595 10.44632 11.44701 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025599 B = 0.002195 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.550372 B =12752.901433 C =13142.002065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.360 6.360 3 C 0.149 3.851 4 C -0.140 4.140 5 C 0.492 3.508 6 O -0.521 6.521 7 N -0.712 5.712 8 C 0.089 3.911 9 C 0.090 3.910 10 H 0.105 0.895 11 O -0.551 6.551 12 C 0.127 3.873 13 N -0.725 5.725 14 C -0.244 4.244 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.929 5.929 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.146 4.146 23 C -0.082 4.082 24 C -0.140 4.140 25 C -0.085 4.085 26 C -0.164 4.164 27 C 0.145 3.855 28 F -0.121 7.121 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.410 0.590 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.373 0.627 39 H 0.022 0.978 40 H 0.029 0.971 41 H 0.389 0.611 42 H 0.256 0.744 43 H 0.143 0.857 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.570 2.848 29.251 29.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.278 6.278 3 C 0.106 3.894 4 C -0.197 4.197 5 C 0.275 3.725 6 O -0.397 6.397 7 N -0.365 5.365 8 C -0.036 4.036 9 C 0.030 3.970 10 H 0.123 0.877 11 O -0.356 6.356 12 C -0.002 4.002 13 N -0.370 5.370 14 C -0.375 4.375 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.578 5.578 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 C -0.148 4.148 23 C -0.100 4.100 24 C -0.158 4.158 25 C -0.103 4.103 26 C -0.183 4.183 27 C 0.126 3.874 28 F -0.099 7.099 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.219 0.781 39 H 0.040 0.960 40 H 0.046 0.954 41 H 0.224 0.776 42 H 0.065 0.935 43 H 0.161 0.839 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.991 3.255 29.014 29.804 hybrid contribution -0.758 0.437 -1.084 1.393 sum 5.233 3.692 27.929 28.654 Atomic orbital electron populations 1.23378 0.80385 1.03914 1.02219 1.88033 1.20530 1.24646 1.94603 1.20441 0.96328 0.83010 0.89624 1.21856 0.89381 1.04229 1.04279 1.20937 0.78698 0.88517 0.84309 1.90758 1.51791 1.14728 1.82417 1.45977 1.64758 1.13205 1.12518 1.22159 0.99835 0.95052 0.86505 1.22385 0.92440 0.90349 0.91848 0.87738 1.86587 1.23044 1.35451 1.90470 1.21186 0.97895 0.93294 0.87786 1.42224 1.81653 1.06326 1.06832 1.19212 1.37775 0.92451 0.88077 0.91233 1.24766 1.02388 0.95425 0.98288 1.69680 1.55244 1.02044 1.30792 0.86177 0.78174 0.77750 0.83987 1.21668 1.21714 1.20762 1.19983 1.03216 0.94376 0.97231 1.21131 0.95880 1.00585 0.92414 1.21162 1.01720 0.95442 0.97474 1.21058 0.95913 0.94648 0.98645 1.21167 1.02484 1.01443 0.93176 1.17348 0.93600 0.90033 0.86440 1.91541 1.74652 1.80956 1.62753 0.88396 0.92325 0.92455 0.90172 0.90392 0.89708 0.75413 0.91048 0.90281 0.78051 0.95983 0.95379 0.77621 0.93460 0.83898 0.85178 0.85020 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 9.14 101.05 0.92 0.90 16 2 O -0.36 -3.62 9.12 -35.23 -0.32 -3.94 16 3 C 0.15 1.64 0.80 -92.92 -0.07 1.57 16 4 C -0.14 -1.35 8.63 37.16 0.32 -1.03 16 5 C 0.49 6.50 5.49 -10.99 -0.06 6.44 16 6 O -0.52 -8.51 13.42 5.55 0.07 -8.44 16 7 N -0.71 -8.68 4.25 -60.30 -0.26 -8.93 16 8 C 0.09 1.17 5.31 -4.05 -0.02 1.15 16 9 C 0.09 1.37 3.09 -26.73 -0.08 1.28 16 10 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 11 O -0.55 -8.59 13.03 -35.23 -0.46 -9.05 16 12 C 0.13 2.46 5.92 -4.04 -0.02 2.43 16 13 N -0.73 -18.33 5.49 -59.91 -0.33 -18.66 16 14 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 18 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.15 -1.60 4.43 -104.56 -0.46 -2.06 16 23 C -0.08 -0.72 7.70 -39.59 -0.30 -1.03 16 24 C -0.14 -1.02 10.05 -39.57 -0.40 -1.41 16 25 C -0.08 -0.62 10.04 -39.59 -0.40 -1.02 16 26 C -0.16 -1.51 10.03 -39.52 -0.40 -1.91 16 27 C 0.15 1.70 6.19 -39.42 -0.24 1.45 16 28 F -0.12 -1.64 12.94 2.25 0.03 -1.61 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.49 4.93 -51.93 -0.26 0.23 16 31 H 0.06 0.57 6.28 -51.93 -0.33 0.24 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.86 6.41 -51.93 -0.33 0.53 16 35 H 0.41 4.66 7.64 -40.82 -0.31 4.35 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.37 4.85 9.05 45.56 0.41 5.26 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.39 10.53 7.54 -40.82 -0.31 10.22 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.14 1.07 5.35 -52.49 -0.28 0.79 16 44 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -34.25 377.13 -6.95 -41.20 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.60 Total: 14.61 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.47 Total: -0.70 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.14 Total: -55.21 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.71 Total: -21.43 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.03 Total: -1.61 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.25 -6.95 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268308043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.961 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds