Wall clock time and date at job start Sat Apr 11 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50710 * 119.99958 * 2 1 4 4 C 1.52997 * 109.46841 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.46958 * 240.00209 * 3 2 1 6 6 C 1.50700 * 109.47106 * 119.99900 * 3 2 1 7 7 O 1.21281 * 119.99761 * 349.69338 * 6 3 2 8 8 N 1.34778 * 119.99840 * 169.68362 * 6 3 2 9 9 C 1.47418 * 125.64754 * 5.92229 * 8 6 3 10 10 C 1.54909 * 104.83358 * 155.83233 * 9 8 6 11 11 C 1.55157 * 101.57852 * 37.00650 * 10 9 8 12 12 C 1.47022 * 125.64748 * 185.87728 * 8 6 3 13 13 H 1.09000 * 109.88004 * 300.67076 * 12 8 6 14 14 C 1.52996 * 109.88411 * 61.68228 * 12 8 6 15 15 N 1.46507 * 109.47076 * 283.23498 * 14 12 8 16 16 C 1.34774 * 120.00297 * 172.27114 * 15 14 12 17 17 O 1.21279 * 119.99573 * 359.97438 * 16 15 14 18 18 C 1.50694 * 120.00365 * 180.02562 * 16 15 14 19 19 S 1.80999 * 109.47511 * 179.97438 * 18 16 15 20 20 C 1.76192 * 100.00239 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00355 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00421 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99381 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46882 * 60.00168 * 24 22 20 26 26 H 1.48491 * 109.47111 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47195 * 300.00319 * 24 22 20 28 28 H 1.08004 * 120.00038 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00122 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00525 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46982 * 184.75223 * 4 3 2 32 32 H 1.09004 * 109.47319 * 304.74402 * 4 3 2 33 33 H 1.08993 * 109.47253 * 64.75180 * 4 3 2 34 34 H 1.09000 * 109.47166 * 299.99773 * 5 3 2 35 35 H 1.09002 * 109.47359 * 59.99893 * 5 3 2 36 36 H 1.08998 * 109.47253 * 179.97438 * 5 3 2 37 37 H 1.08998 * 110.36912 * 274.67299 * 9 8 6 38 38 H 1.09005 * 110.37222 * 36.99525 * 9 8 6 39 39 H 1.09000 * 111.00509 * 155.08187 * 10 9 8 40 40 H 1.09006 * 111.00541 * 278.89754 * 10 9 8 41 41 H 1.09001 * 110.72156 * 206.13499 * 11 10 9 42 42 H 1.09003 * 110.71744 * 82.86550 * 11 10 9 43 43 H 1.08996 * 109.47294 * 163.23390 * 14 12 8 44 44 H 1.09000 * 109.47237 * 43.22937 * 14 12 8 45 45 H 0.97006 * 119.99926 * 352.27153 * 15 14 12 46 46 H 1.09001 * 109.47326 * 59.99525 * 18 16 15 47 47 H 1.09003 * 109.46623 * 299.99766 * 18 16 15 48 48 H 0.96998 * 119.99927 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9430 1.3862 -1.2493 6 6 2.9299 1.3850 1.2305 7 8 2.7995 0.5687 2.1178 8 7 3.8496 2.3636 1.3447 9 6 4.0304 3.4864 0.4068 10 6 4.7091 4.5982 1.2453 11 6 5.6547 3.7694 2.1542 12 6 4.8382 2.4884 2.4257 13 1 4.3290 2.5672 3.3863 14 6 5.7649 1.2710 2.4266 15 7 5.0672 0.1266 3.0181 16 6 5.6306 -1.0973 2.9840 17 8 6.7150 -1.2512 2.4631 18 6 4.9128 -2.2745 3.5919 19 16 5.9181 -3.7657 3.3872 20 6 4.8709 -4.9500 4.1652 21 1 3.9241 -4.6415 4.5835 22 6 5.2620 -6.2797 4.2395 23 7 6.4157 -6.6557 3.7292 24 14 4.1515 -7.5354 5.0636 25 1 2.8477 -7.5841 4.3543 26 1 4.7937 -8.8732 5.0125 27 1 3.9303 -7.1468 6.4797 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.6115 3.4098 -0.0845 32 1 0.3876 2.3638 -0.8436 33 1 0.5003 2.4591 0.9303 34 1 3.6514 0.5578 -1.2493 35 1 2.3164 1.3285 -2.1393 36 1 3.4877 2.3304 -1.2495 37 1 4.6742 3.1893 -0.4211 38 1 3.0650 3.8285 0.0338 39 1 5.2756 5.2773 0.6081 40 1 3.9748 5.1435 1.8384 41 1 5.8595 4.3005 3.0838 42 1 6.5817 3.5324 1.6320 43 1 6.6574 1.4942 3.0111 44 1 6.0516 1.0319 1.4025 45 1 4.1997 0.2497 3.4344 46 1 3.9534 -2.4123 3.0931 47 1 4.7472 -2.0904 4.6534 48 1 6.6889 -7.5850 3.7808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297689175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:10 Heat of formation + Delta-G solvation = -38.524458 kcal Electronic energy + Delta-G solvation = -28352.676852 eV Core-core repulsion = 24534.963824 eV Total energy + Delta-G solvation = -3817.713028 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08122 -38.88138 -38.05745 -36.54161 -34.22304 -32.38335 -32.33035 -30.95752 -30.28535 -28.62777 -27.83476 -25.71970 -25.33450 -24.33293 -22.63571 -21.92076 -20.10167 -19.81193 -18.61916 -17.75317 -17.17215 -16.83037 -16.29702 -15.90662 -15.53957 -15.02871 -14.98730 -14.82506 -14.71663 -14.20523 -13.98341 -13.87860 -13.57192 -13.37666 -13.04387 -12.80030 -12.70227 -12.54263 -12.45576 -12.35224 -12.23475 -12.08773 -11.66827 -11.58987 -11.52768 -11.25969 -11.11265 -10.96267 -10.93920 -10.86016 -10.67678 -9.93009 -9.71254 -9.50403 -9.16942 -8.98583 -8.95911 -8.52309 -8.10709 -6.37624 -6.12007 -3.80914 2.06335 2.43887 2.75103 3.19932 3.30122 3.33586 3.34923 3.42557 3.87590 4.02459 4.10489 4.24198 4.30720 4.44827 4.48799 4.60311 4.65411 4.78528 4.88016 4.92071 5.06988 5.18812 5.22322 5.22733 5.26757 5.32177 5.35405 5.39779 5.41368 5.45288 5.48375 5.53083 5.65962 5.67206 5.81014 5.83474 5.90445 6.00567 6.08484 6.13269 6.38052 6.48501 6.59546 6.90788 7.23762 7.69424 7.88783 8.17307 8.45514 8.89499 9.33117 10.95508 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.003010 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.859883 B = 9299.384342 C =10765.638937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 C -0.048 4.048 4 C -0.148 4.148 5 C -0.153 4.153 6 C 0.545 3.455 7 O -0.517 6.517 8 N -0.616 5.616 9 C 0.087 3.913 10 C -0.134 4.134 11 C -0.124 4.124 12 C 0.125 3.875 13 H 0.082 0.918 14 C 0.114 3.886 15 N -0.726 5.726 16 C 0.533 3.467 17 O -0.532 6.532 18 C -0.148 4.148 19 S -0.064 6.064 20 C -0.533 4.533 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.409 0.591 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 28.201 -9.312 31.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.142 4.142 3 C -0.051 4.051 4 C -0.205 4.205 5 C -0.210 4.210 6 C 0.333 3.667 7 O -0.392 6.392 8 N -0.351 5.351 9 C -0.035 4.035 10 C -0.172 4.172 11 C -0.163 4.163 12 C 0.021 3.979 13 H 0.100 0.900 14 C -0.012 4.012 15 N -0.386 5.386 16 C 0.319 3.681 17 O -0.408 6.408 18 C -0.298 4.298 19 S 0.163 5.837 20 C -0.681 4.681 21 H 0.089 0.911 22 C -0.136 4.136 23 N -0.505 5.505 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.200 1.200 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.249 0.751 46 H 0.108 0.892 47 H 0.104 0.896 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.784 27.280 -9.726 29.990 hybrid contribution -2.330 -0.646 1.299 2.745 sum -10.114 26.634 -8.427 29.710 Atomic orbital electron populations 1.23936 0.95802 1.02158 1.00980 1.22521 0.95731 0.96551 0.99412 1.19797 0.95440 0.96037 0.93832 1.22078 0.98725 0.96474 1.03173 1.22121 0.99639 1.03459 0.95735 1.20161 0.79160 0.79413 0.87956 1.90551 1.67632 1.39753 1.41224 1.48544 1.33950 1.26392 1.26230 1.22764 1.01472 0.86335 0.92927 1.22813 0.98896 0.96976 0.98478 1.22634 0.98463 0.93973 1.01194 1.21901 0.89261 0.95016 0.91678 0.90000 1.21627 0.94688 0.85242 0.99600 1.46284 1.24105 1.07037 1.61202 1.20238 0.85550 0.83508 0.78827 1.90662 1.21046 1.84698 1.44358 1.23471 1.04233 0.99019 1.03097 1.85277 1.26302 0.95114 1.76997 1.22854 1.07075 0.94972 1.43188 0.91054 1.24981 0.95584 0.97600 0.95440 1.70020 1.19931 1.17622 1.42934 0.86238 0.80137 0.79501 0.79711 1.19968 1.20861 1.19968 0.88133 0.88082 0.86588 0.91473 0.90828 0.91735 0.91657 0.91287 0.90867 0.90675 0.89602 0.89507 0.90448 0.89479 0.89757 0.91146 0.91348 0.75086 0.89237 0.89628 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.86 13.71 29.02 0.40 -1.47 16 2 C -0.12 -1.39 8.03 -36.02 -0.29 -1.68 16 3 C -0.05 -0.45 0.72 -156.81 -0.11 -0.56 16 4 C -0.15 -0.98 6.97 37.16 0.26 -0.72 16 5 C -0.15 -1.20 8.15 37.16 0.30 -0.90 16 6 C 0.54 6.42 6.31 -10.98 -0.07 6.36 16 7 O -0.52 -8.03 12.75 5.56 0.07 -7.96 16 8 N -0.62 -5.61 3.03 -163.03 -0.49 -6.11 16 9 C 0.09 0.48 4.91 -2.53 -0.01 0.46 16 10 C -0.13 -0.54 7.09 -24.58 -0.17 -0.71 16 11 C -0.12 -0.70 6.43 -24.90 -0.16 -0.86 16 12 C 0.12 1.15 3.02 -66.96 -0.20 0.95 16 13 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 14 C 0.11 1.50 5.05 -4.04 -0.02 1.47 16 15 N -0.73 -12.10 4.33 -60.30 -0.26 -12.37 16 16 C 0.53 11.47 7.85 -10.99 -0.09 11.39 16 17 O -0.53 -13.23 15.83 5.56 0.09 -13.14 16 18 C -0.15 -3.43 6.16 36.00 0.22 -3.21 16 19 S -0.06 -1.85 20.57 -107.50 -2.21 -4.06 16 20 C -0.53 -16.09 9.50 30.94 0.29 -15.80 16 21 H 0.07 2.06 7.80 -52.48 -0.41 1.65 16 22 C 0.07 2.17 5.49 -17.43 -0.10 2.08 16 23 N -0.87 -27.22 13.22 55.49 0.73 -26.49 16 24 Si 0.92 22.37 29.55 -169.99 -5.02 17.35 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 28 H 0.10 0.79 5.68 -52.48 -0.30 0.49 16 29 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.07 0.33 5.06 -51.93 -0.26 0.06 16 32 H 0.07 0.41 7.19 -51.93 -0.37 0.03 16 33 H 0.06 0.48 7.77 -51.93 -0.40 0.08 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.43 4.18 -51.93 -0.22 0.22 16 37 H 0.08 0.38 6.82 -51.93 -0.35 0.03 16 38 H 0.09 0.36 4.58 -51.93 -0.24 0.12 16 39 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.47 7.85 -51.93 -0.41 0.06 16 43 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 44 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 45 H 0.41 6.56 5.98 -40.82 -0.24 6.32 16 46 H 0.09 2.04 8.14 -51.91 -0.42 1.61 16 47 H 0.09 1.87 8.14 -51.92 -0.42 1.44 16 48 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 388.57 15.07 5.86 5.86 Total: -1.00 -37.76 388.57 -8.40 -46.15 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.41 Total: 3.95 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 0.25 Total: -3.19 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.02 Total: -44.96 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.16 Total: -21.10 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -2.21 Total: -4.06 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.76 -8.40 -46.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297689175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.628 kcal (2) G-P(sol) polarization free energy of solvation -37.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds