Wall clock time and date at job start Sat Apr 11 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50710 * 119.99958 * 2 1 4 4 C 1.52997 * 109.46841 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.46958 * 240.00209 * 3 2 1 6 6 C 1.50700 * 109.47106 * 119.99900 * 3 2 1 7 7 O 1.21281 * 119.99761 * 349.69338 * 6 3 2 8 8 N 1.34778 * 119.99840 * 169.68362 * 6 3 2 9 9 C 1.47418 * 125.64754 * 5.92229 * 8 6 3 10 10 C 1.54909 * 104.83358 * 155.83233 * 9 8 6 11 11 C 1.55157 * 101.57852 * 37.00650 * 10 9 8 12 12 C 1.47022 * 125.64748 * 185.87728 * 8 6 3 13 13 H 1.09000 * 109.88004 * 300.67076 * 12 8 6 14 14 C 1.52996 * 109.88411 * 61.68228 * 12 8 6 15 15 N 1.46507 * 109.47076 * 283.23498 * 14 12 8 16 16 C 1.34774 * 120.00297 * 172.27114 * 15 14 12 17 17 O 1.21279 * 119.99573 * 359.97438 * 16 15 14 18 18 C 1.50694 * 120.00365 * 180.02562 * 16 15 14 19 19 S 1.80999 * 109.47511 * 179.97438 * 18 16 15 20 20 C 1.76192 * 100.00239 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00355 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00421 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99381 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46882 * 60.00168 * 24 22 20 26 26 H 1.48491 * 109.47111 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47195 * 300.00319 * 24 22 20 28 28 H 1.08004 * 120.00038 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00122 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00525 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46982 * 184.75223 * 4 3 2 32 32 H 1.09004 * 109.47319 * 304.74402 * 4 3 2 33 33 H 1.08993 * 109.47253 * 64.75180 * 4 3 2 34 34 H 1.09000 * 109.47166 * 299.99773 * 5 3 2 35 35 H 1.09002 * 109.47359 * 59.99893 * 5 3 2 36 36 H 1.08998 * 109.47253 * 179.97438 * 5 3 2 37 37 H 1.08998 * 110.36912 * 274.67299 * 9 8 6 38 38 H 1.09005 * 110.37222 * 36.99525 * 9 8 6 39 39 H 1.09000 * 111.00509 * 155.08187 * 10 9 8 40 40 H 1.09006 * 111.00541 * 278.89754 * 10 9 8 41 41 H 1.09001 * 110.72156 * 206.13499 * 11 10 9 42 42 H 1.09003 * 110.71744 * 82.86550 * 11 10 9 43 43 H 1.08996 * 109.47294 * 163.23390 * 14 12 8 44 44 H 1.09000 * 109.47237 * 43.22937 * 14 12 8 45 45 H 0.97006 * 119.99926 * 352.27153 * 15 14 12 46 46 H 1.09001 * 109.47326 * 59.99525 * 18 16 15 47 47 H 1.09003 * 109.46623 * 299.99766 * 18 16 15 48 48 H 0.96998 * 119.99927 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9430 1.3862 -1.2493 6 6 2.9299 1.3850 1.2305 7 8 2.7995 0.5687 2.1178 8 7 3.8496 2.3636 1.3447 9 6 4.0304 3.4864 0.4068 10 6 4.7091 4.5982 1.2453 11 6 5.6547 3.7694 2.1542 12 6 4.8382 2.4884 2.4257 13 1 4.3290 2.5672 3.3863 14 6 5.7649 1.2710 2.4266 15 7 5.0672 0.1266 3.0181 16 6 5.6306 -1.0973 2.9840 17 8 6.7150 -1.2512 2.4631 18 6 4.9128 -2.2745 3.5919 19 16 5.9181 -3.7657 3.3872 20 6 4.8709 -4.9500 4.1652 21 1 3.9241 -4.6415 4.5835 22 6 5.2620 -6.2797 4.2395 23 7 6.4157 -6.6557 3.7292 24 14 4.1515 -7.5354 5.0636 25 1 2.8477 -7.5841 4.3543 26 1 4.7937 -8.8732 5.0125 27 1 3.9303 -7.1468 6.4797 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.6115 3.4098 -0.0845 32 1 0.3876 2.3638 -0.8436 33 1 0.5003 2.4591 0.9303 34 1 3.6514 0.5578 -1.2493 35 1 2.3164 1.3285 -2.1393 36 1 3.4877 2.3304 -1.2495 37 1 4.6742 3.1893 -0.4211 38 1 3.0650 3.8285 0.0338 39 1 5.2756 5.2773 0.6081 40 1 3.9748 5.1435 1.8384 41 1 5.8595 4.3005 3.0838 42 1 6.5817 3.5324 1.6320 43 1 6.6574 1.4942 3.0111 44 1 6.0516 1.0319 1.4025 45 1 4.1997 0.2497 3.4344 46 1 3.9534 -2.4123 3.0931 47 1 4.7472 -2.0904 4.6534 48 1 6.6889 -7.5850 3.7808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297689175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:09 Heat of formation + Delta-G solvation = -64.462203 kcal Electronic energy + Delta-G solvation = -28353.801597 eV Core-core repulsion = 24534.963824 eV Total energy + Delta-G solvation = -3818.837773 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.88797 -40.45426 -38.86812 -37.39760 -35.59873 -34.62902 -33.11595 -31.99534 -31.26451 -29.96998 -28.39721 -27.73213 -26.44426 -25.25069 -23.38098 -22.50882 -21.58243 -20.70135 -19.87913 -19.33988 -18.11687 -17.86509 -17.47497 -17.21138 -16.92227 -16.74130 -16.34437 -15.85418 -15.80554 -15.60300 -14.93027 -14.76176 -14.74453 -14.55209 -14.23642 -13.97739 -13.88845 -13.49130 -13.39016 -13.22191 -13.20920 -13.07416 -12.90269 -12.76853 -12.68951 -12.68357 -12.29424 -12.24064 -11.85217 -11.77342 -11.55654 -11.50682 -11.17168 -10.99299 -10.76335 -10.36363 -10.31807 -10.12680 -9.63592 -8.72109 -8.38407 -6.17584 1.22393 1.24586 1.40663 1.41903 1.53376 1.56986 1.59007 2.03398 2.23530 2.33734 2.94790 3.27898 3.38973 3.53816 3.61331 3.78325 3.81479 3.95749 4.01612 4.08450 4.13877 4.17016 4.21361 4.38122 4.42759 4.43358 4.47320 4.55736 4.64011 4.73118 4.74282 4.83836 4.90845 5.00452 5.00753 5.03641 5.14879 5.20625 5.26207 5.36387 5.36542 5.38704 5.51321 5.64717 5.78682 6.15519 6.46152 6.51168 7.01684 7.09479 7.30437 8.71028 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.003010 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.859883 B = 9299.384342 C =10765.638937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C -0.045 4.045 4 C -0.142 4.142 5 C -0.149 4.149 6 C 0.533 3.467 7 O -0.568 6.568 8 N -0.613 5.613 9 C 0.077 3.923 10 C -0.121 4.121 11 C -0.118 4.118 12 C 0.127 3.873 13 H 0.080 0.920 14 C 0.110 3.890 15 N -0.704 5.704 16 C 0.531 3.469 17 O -0.571 6.571 18 C -0.124 4.124 19 S -0.140 6.140 20 C -0.553 4.553 21 H 0.077 0.923 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 1.001 2.999 25 H -0.264 1.264 26 H -0.273 1.273 27 H -0.261 1.261 28 H 0.126 0.874 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.051 0.949 45 H 0.414 0.586 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.449 31.185 -9.440 34.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.170 4.170 3 C -0.048 4.048 4 C -0.199 4.199 5 C -0.205 4.205 6 C 0.322 3.678 7 O -0.446 6.446 8 N -0.347 5.347 9 C -0.044 4.044 10 C -0.159 4.159 11 C -0.157 4.157 12 C 0.023 3.977 13 H 0.098 0.902 14 C -0.015 4.015 15 N -0.362 5.362 16 C 0.317 3.683 17 O -0.451 6.451 18 C -0.276 4.276 19 S 0.087 5.913 20 C -0.700 4.700 21 H 0.095 0.905 22 C -0.190 4.190 23 N -0.546 5.546 24 Si 0.822 3.178 25 H -0.188 1.188 26 H -0.197 1.197 27 H -0.186 1.186 28 H 0.144 0.856 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.256 0.744 46 H 0.109 0.891 47 H 0.119 0.881 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.690 30.354 -9.875 33.358 hybrid contribution -1.743 -1.479 1.299 2.629 sum -11.433 28.875 -8.576 32.218 Atomic orbital electron populations 1.24129 0.95230 1.03278 0.98886 1.22513 0.96476 0.96491 1.01480 1.19816 0.95766 0.96083 0.93115 1.22078 0.98333 0.95997 1.03459 1.22129 0.99265 1.03437 0.95708 1.20734 0.79646 0.79232 0.88166 1.90500 1.69375 1.41757 1.42981 1.48645 1.32709 1.26579 1.26747 1.23095 1.03027 0.85531 0.92742 1.22830 0.98611 0.96367 0.98093 1.22667 0.98235 0.92148 1.02618 1.21967 0.89034 0.94685 0.92016 0.90202 1.21927 0.95905 0.85328 0.98319 1.46203 1.23908 1.06404 1.59671 1.19971 0.85040 0.84542 0.78749 1.90640 1.22677 1.85386 1.46427 1.23292 1.03005 0.96999 1.04270 1.85368 1.29244 0.98998 1.77723 1.23162 1.07332 0.95711 1.43832 0.90526 1.26153 0.97261 0.99830 0.95724 1.70173 1.21964 1.18460 1.43978 0.84983 0.77824 0.76238 0.78803 1.18831 1.19737 1.18600 0.85570 0.88325 0.90208 0.89120 0.89180 0.92517 0.94713 0.89756 0.88458 0.90006 0.87614 0.87017 0.89510 0.87808 0.89599 0.90418 0.93013 0.74437 0.89082 0.88122 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.39 13.71 67.79 0.93 -2.46 16 2 C -0.15 -3.53 8.03 25.66 0.21 -3.33 16 3 C -0.04 -0.80 0.72 -53.67 -0.04 -0.84 16 4 C -0.14 -1.48 6.97 71.98 0.50 -0.97 16 5 C -0.15 -2.19 8.15 71.98 0.59 -1.60 16 6 C 0.53 12.49 6.31 87.66 0.55 13.04 16 7 O -0.57 -18.25 12.75 -3.03 -0.04 -18.29 16 8 N -0.61 -10.28 3.03 -788.09 -2.39 -12.67 16 9 C 0.08 0.58 4.91 86.86 0.43 1.01 16 10 C -0.12 -0.46 7.09 31.99 0.23 -0.23 16 11 C -0.12 -0.98 6.43 31.78 0.20 -0.78 16 12 C 0.13 2.16 3.02 45.34 0.14 2.30 16 13 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 14 C 0.11 2.89 5.05 86.38 0.44 3.33 16 15 N -0.70 -24.13 4.33 -463.07 -2.01 -26.14 16 16 C 0.53 23.87 7.85 87.66 0.69 24.56 16 17 O -0.57 -29.83 15.83 -3.03 -0.05 -29.88 16 18 C -0.12 -6.02 6.16 71.23 0.44 -5.58 16 19 S -0.14 -8.56 20.57 -56.49 -1.16 -9.72 16 20 C -0.55 -34.22 9.50 67.96 0.65 -33.58 16 21 H 0.08 4.50 7.80 -2.91 -0.02 4.47 16 22 C 0.02 0.92 5.49 84.86 0.47 1.38 16 23 N -0.91 -58.26 13.22 21.65 0.29 -57.98 16 24 Si 1.00 46.08 29.55 68.60 2.03 48.10 16 25 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 27 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 28 H 0.13 1.71 5.68 -2.91 -0.02 1.69 16 29 H 0.10 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.08 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.09 0.50 5.06 -2.38 -0.01 0.48 16 32 H 0.09 0.67 7.19 -2.38 -0.02 0.65 16 33 H 0.06 0.71 7.77 -2.39 -0.02 0.69 16 34 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 0.90 4.18 -2.39 -0.01 0.89 16 37 H 0.08 0.56 6.82 -2.39 -0.02 0.55 16 38 H 0.11 0.40 4.58 -2.38 -0.01 0.39 16 39 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.09 0.24 8.14 -2.38 -0.02 0.22 16 41 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.09 0.73 7.85 -2.39 -0.02 0.71 16 43 H 0.08 1.96 8.07 -2.39 -0.02 1.94 16 44 H 0.05 1.56 8.09 -2.39 -0.02 1.54 16 45 H 0.41 13.62 5.98 -92.70 -0.55 13.07 16 46 H 0.09 4.34 8.14 -2.40 -0.02 4.32 16 47 H 0.10 4.50 8.14 -2.39 -0.02 4.48 16 48 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -87.47 388.57 3.49 -83.98 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.41 Total: 26.33 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 6.41 Total: -3.75 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -4.11 Total: -96.79 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -0.09 Total: -48.16 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -87.47 3.49 -83.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297689175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.516 kcal (2) G-P(sol) polarization free energy of solvation -87.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds