Wall clock time and date at job start Sat Apr 11 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47322 * 2 1 4 4 C 1.52999 * 115.55869 * 325.68728 * 3 2 1 5 5 C 1.53006 * 117.50127 * 111.37164 * 3 2 1 6 6 C 1.52999 * 117.50151 * 179.97438 * 3 2 1 7 7 H 1.09002 * 117.49803 * 359.97438 * 6 3 2 8 8 C 1.50700 * 117.51845 * 145.02652 * 6 3 2 9 9 O 1.21285 * 119.99855 * 359.88751 * 8 6 3 10 10 N 1.34772 * 119.99895 * 179.88026 * 8 6 3 11 11 C 1.46962 * 120.59667 * 359.72917 * 10 8 6 12 12 C 1.53805 * 108.40013 * 124.75546 * 11 10 8 13 13 N 1.46960 * 108.58364 * 49.63934 * 12 11 10 14 14 C 1.34775 * 120.59969 * 124.62340 * 13 12 11 15 15 O 1.21277 * 120.00275 * 180.02562 * 14 13 12 16 16 C 1.50695 * 119.99670 * 0.02562 * 14 13 12 17 17 S 1.81004 * 109.47036 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99832 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00459 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99736 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99831 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99881 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47255 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46876 * 120.00090 * 22 20 18 25 25 H 1.48493 * 109.47215 * 240.00047 * 22 20 18 26 26 C 1.46972 * 118.80657 * 304.64517 * 13 12 11 27 27 C 1.46972 * 120.59315 * 180.02562 * 10 8 6 28 28 H 1.09003 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47453 * 299.99950 * 1 2 3 30 30 H 1.09005 * 109.46944 * 60.00541 * 1 2 3 31 31 H 1.09002 * 109.47188 * 239.99507 * 2 1 3 32 32 H 1.09008 * 109.46797 * 120.00218 * 2 1 3 33 33 H 1.09000 * 109.47146 * 274.30601 * 4 3 2 34 34 H 1.08999 * 109.47670 * 34.31183 * 4 3 2 35 35 H 1.09001 * 109.47304 * 154.31154 * 4 3 2 36 36 H 1.09004 * 117.49624 * 0.02562 * 5 3 2 37 37 H 1.08992 * 117.49824 * 214.98043 * 5 3 2 38 38 H 1.09005 * 109.60660 * 244.53633 * 11 10 8 39 39 H 1.08998 * 109.61054 * 5.04214 * 11 10 8 40 40 H 1.08998 * 109.74033 * 289.84511 * 12 11 10 41 41 H 1.09008 * 109.53257 * 169.30142 * 12 11 10 42 42 H 1.09006 * 109.47025 * 299.99907 * 16 14 13 43 43 H 1.08998 * 109.47603 * 60.00156 * 16 14 13 44 44 H 0.97004 * 119.99663 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.61165 * 295.48179 * 26 13 12 46 46 H 1.09006 * 109.60849 * 174.97192 * 26 13 12 47 47 H 1.09008 * 109.60810 * 354.95124 * 27 10 8 48 48 H 1.08995 * 109.60908 * 115.28572 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.1852 2.4448 -0.7781 5 6 2.7418 1.9437 1.2638 6 6 3.5550 1.6561 0.0006 7 1 4.1884 0.7690 0.0014 8 6 4.0919 2.8377 -0.7654 9 8 3.3302 3.5756 -1.3540 10 7 5.4183 3.0744 -0.7963 11 6 6.3524 2.1923 -0.0829 12 6 7.3991 1.6801 -1.0866 13 7 7.9369 2.8285 -1.8295 14 6 9.2632 3.0658 -1.8597 15 8 9.6952 4.0169 -2.4758 16 6 10.2095 2.1492 -1.1280 17 16 11.9090 2.7280 -1.3583 18 6 12.7758 1.5106 -0.4248 19 1 12.2309 0.7201 0.0697 20 6 14.1591 1.5676 -0.3252 21 7 14.8232 2.5313 -0.9276 22 14 15.0781 0.2774 0.6650 23 1 14.1083 -0.6894 1.2392 24 1 16.0283 -0.4423 -0.2208 25 1 15.8285 0.9379 1.7630 26 6 7.0022 3.7138 -2.5384 27 6 5.9559 4.2232 -1.5388 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.4777 2.4338 -1.8280 34 1 0.1339 2.1707 -0.6909 35 1 1.3351 3.4443 -0.3697 36 1 2.8405 1.2456 2.0952 37 1 2.5946 2.9875 1.5409 38 1 6.8467 2.7498 0.7127 39 1 5.8074 1.3493 0.3420 40 1 6.9324 0.9813 -1.7809 41 1 8.2061 1.1818 -0.5493 42 1 9.9662 2.1489 -0.0655 43 1 10.1139 1.1378 -1.5229 44 1 15.7899 2.5713 -0.8576 45 1 6.5073 3.1599 -3.3361 46 1 7.5470 4.5587 -2.9600 47 1 5.1489 4.7217 -2.0759 48 1 6.4199 4.9231 -0.8440 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574744341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:23 Heat of formation + Delta-G solvation = -59.169333 kcal Electronic energy + Delta-G solvation = -27359.693602 eV Core-core repulsion = 23541.085345 eV Total energy + Delta-G solvation = -3818.608257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.77996 -40.81005 -38.92387 -37.74104 -35.17155 -34.56869 -33.38433 -32.68957 -30.79680 -29.24203 -28.51255 -27.64358 -25.78128 -24.71939 -24.56949 -23.18202 -21.20458 -20.11739 -19.68755 -19.17550 -18.49960 -17.67007 -17.20779 -16.86820 -16.80634 -16.73812 -16.42511 -15.94023 -15.71251 -15.48225 -15.09988 -14.98675 -14.71489 -14.54674 -14.47689 -13.85885 -13.70157 -13.51875 -13.45313 -13.26295 -13.15031 -12.99878 -12.90897 -12.78941 -12.63903 -12.60148 -12.46050 -12.39358 -11.97993 -11.68457 -11.63979 -11.14827 -11.03914 -10.94549 -10.78633 -10.42738 -10.35590 -10.23234 -9.43146 -8.66158 -8.33427 -6.11545 1.24028 1.42248 1.43124 1.45137 1.56197 1.57163 1.77856 2.14055 2.28252 2.79615 3.01256 3.23693 3.36367 3.59568 3.69145 3.73722 3.82409 3.93032 4.04817 4.08682 4.11350 4.16151 4.23352 4.34005 4.44318 4.47280 4.49896 4.56222 4.61953 4.63460 4.73625 4.78715 4.87548 4.90950 4.94795 5.00548 5.05659 5.15408 5.23507 5.33929 5.36190 5.40847 5.43956 5.44077 5.60924 6.16513 6.21771 6.35104 7.07845 7.08499 7.12527 8.75922 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.002162 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.366022 B =12948.741409 C =14051.949922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 C -0.095 4.095 4 C -0.103 4.103 5 C -0.134 4.134 6 C -0.194 4.194 7 H 0.151 0.849 8 C 0.540 3.460 9 O -0.571 6.571 10 N -0.609 5.609 11 C 0.094 3.906 12 C 0.086 3.914 13 N -0.609 5.609 14 C 0.535 3.465 15 O -0.565 6.565 16 C -0.123 4.123 17 S -0.157 6.157 18 C -0.541 4.541 19 H 0.087 0.913 20 C 0.011 3.989 21 N -0.913 5.913 22 Si 0.999 3.001 23 H -0.253 1.253 24 H -0.277 1.277 25 H -0.276 1.276 26 C 0.104 3.896 27 C 0.107 3.893 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.131 0.869 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.270 0.730 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.085 -8.519 6.287 30.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 C -0.096 4.096 4 C -0.160 4.160 5 C -0.171 4.171 6 C -0.214 4.214 7 H 0.169 0.831 8 C 0.331 3.669 9 O -0.450 6.450 10 N -0.342 5.342 11 C -0.029 4.029 12 C -0.037 4.037 13 N -0.344 5.344 14 C 0.323 3.677 15 O -0.443 6.443 16 C -0.274 4.274 17 S 0.070 5.930 18 C -0.689 4.689 19 H 0.105 0.895 20 C -0.194 4.194 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.176 1.176 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.019 4.019 27 C -0.017 4.017 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.149 0.851 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.152 0.848 40 H 0.111 0.889 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.116 0.884 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.703 -6.647 5.024 29.888 hybrid contribution 0.714 -0.983 0.704 1.405 sum -27.989 -7.630 5.728 29.570 Atomic orbital electron populations 1.21830 0.95104 1.02063 1.01985 1.21109 0.96432 0.91614 1.02950 1.21675 0.90245 0.97765 0.99911 1.21354 0.98755 0.96748 0.99150 1.23276 1.00092 1.02847 0.90872 1.22454 0.96536 0.98763 1.03658 0.83107 1.20280 0.81176 0.85570 0.79885 1.90691 1.56980 1.50519 1.46859 1.48117 1.06185 1.28604 1.51275 1.22482 0.90821 0.95613 0.93948 1.22560 0.98431 0.87408 0.95325 1.48037 1.04476 1.29629 1.52222 1.20227 0.82885 0.84685 0.79920 1.90687 1.77200 1.31906 1.44532 1.23367 0.97540 1.02339 1.04117 1.85694 0.96830 1.40937 1.69496 1.23228 0.94753 1.14285 1.36609 0.89525 1.26149 0.97697 0.98689 0.96821 1.70199 1.08530 1.33322 1.42873 0.84900 0.77956 0.77527 0.77536 1.17614 1.20208 1.20142 1.21929 0.90158 0.95243 0.94587 1.21840 0.96602 0.88424 0.94827 0.91794 0.92405 0.92743 0.91437 0.89910 0.93708 0.91235 0.93966 0.85115 0.89644 0.90273 0.84774 0.88904 0.86861 0.86780 0.87057 0.92095 0.90223 0.89529 0.88352 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.92 71.98 0.64 -0.63 16 2 C -0.08 -0.72 6.12 30.59 0.19 -0.53 16 3 C -0.10 -1.20 2.47 -52.18 -0.13 -1.33 16 4 C -0.10 -1.79 7.73 71.98 0.56 -1.23 16 5 C -0.13 -1.40 9.52 30.58 0.29 -1.11 16 6 C -0.19 -2.38 4.81 -11.55 -0.06 -2.44 16 7 H 0.15 1.02 6.60 -2.39 -0.02 1.00 16 8 C 0.54 10.53 7.46 87.66 0.65 11.18 16 9 O -0.57 -15.20 12.52 -3.04 -0.04 -15.24 16 10 N -0.61 -10.87 2.94 -817.08 -2.40 -13.27 16 11 C 0.09 1.17 6.54 86.56 0.57 1.74 16 12 C 0.09 1.34 6.52 86.56 0.56 1.91 16 13 N -0.61 -15.45 2.95 -817.09 -2.41 -17.86 16 14 C 0.53 19.26 7.72 87.66 0.68 19.94 16 15 O -0.57 -25.95 15.27 -3.02 -0.05 -25.99 16 16 C -0.12 -4.57 4.50 71.23 0.32 -4.25 16 17 S -0.16 -8.49 20.57 -56.49 -1.16 -9.66 16 18 C -0.54 -29.84 9.50 67.96 0.65 -29.20 16 19 H 0.09 4.37 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.61 5.49 84.86 0.47 1.08 16 21 N -0.91 -55.37 13.22 21.65 0.29 -55.08 16 22 Si 1.00 42.41 29.55 68.60 2.03 44.44 16 23 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 24 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 25 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 26 C 0.10 2.47 6.60 86.43 0.57 3.04 16 27 C 0.11 2.25 6.59 86.43 0.57 2.82 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.53 6.45 -2.38 -0.02 0.52 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.46 7.90 -2.38 -0.02 0.44 16 33 H 0.04 0.96 7.26 -2.39 -0.02 0.94 16 34 H 0.07 0.97 5.59 -2.39 -0.01 0.96 16 35 H 0.04 0.89 7.02 -2.39 -0.02 0.87 16 36 H 0.13 0.70 8.05 -2.38 -0.02 0.68 16 37 H 0.09 1.15 8.05 -2.39 -0.02 1.13 16 38 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.13 0.76 5.51 -2.39 -0.01 0.75 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.11 1.60 5.91 -2.38 -0.01 1.59 16 42 H 0.11 3.70 7.72 -2.39 -0.02 3.68 16 43 H 0.11 3.68 7.91 -2.40 -0.02 3.66 16 44 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.09 2.43 6.99 -2.38 -0.02 2.42 16 47 H 0.10 2.19 6.99 -2.38 -0.02 2.18 16 48 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -79.62 389.89 3.74 -75.88 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.96 Total: 15.79 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 6.53 Total: 1.00 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -4.52 Total: -86.21 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -0.08 Total: -41.23 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.66 kcal Total: -79.62 3.74 -75.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574744341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.708 kcal (2) G-P(sol) polarization free energy of solvation -79.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds