Wall clock time and date at job start Sat Apr 11 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47345 * 2 1 4 4 C 1.52997 * 115.54950 * 34.41103 * 3 2 1 5 5 C 1.52999 * 117.51269 * 248.71174 * 3 2 1 6 6 C 1.52994 * 117.49816 * 180.08442 * 3 2 1 7 7 H 1.09002 * 117.50456 * 0.02562 * 6 3 2 8 8 C 1.50699 * 117.49943 * 214.99665 * 6 3 2 9 9 O 1.21278 * 120.00004 * 0.02562 * 8 6 3 10 10 N 1.34777 * 120.00241 * 180.02562 * 8 6 3 11 11 C 1.46960 * 120.59428 * 359.72071 * 10 8 6 12 12 C 1.53814 * 108.39723 * 124.75762 * 11 10 8 13 13 N 1.46966 * 108.57749 * 49.63959 * 12 11 10 14 14 C 1.34775 * 120.59210 * 124.62316 * 13 12 11 15 15 O 1.21277 * 120.00305 * 180.02562 * 14 13 12 16 16 C 1.50706 * 120.00072 * 0.02587 * 14 13 12 17 17 S 1.81003 * 109.47165 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99995 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99812 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99825 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00230 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00089 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46859 * 60.00256 * 22 20 18 24 24 H 1.48502 * 109.47608 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47174 * 300.00730 * 22 20 18 26 26 C 1.46957 * 118.81110 * 304.64499 * 13 12 11 27 27 C 1.46966 * 120.59362 * 180.02562 * 10 8 6 28 28 H 1.09003 * 109.46769 * 60.00378 * 1 2 3 29 29 H 1.09005 * 109.47491 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47401 * 300.00352 * 1 2 3 31 31 H 1.08999 * 109.47401 * 239.99648 * 2 1 3 32 32 H 1.09003 * 109.46769 * 119.99622 * 2 1 3 33 33 H 1.09002 * 109.47153 * 205.67229 * 4 3 2 34 34 H 1.09001 * 109.46832 * 85.67420 * 4 3 2 35 35 H 1.09004 * 109.47261 * 325.67402 * 4 3 2 36 36 H 1.08994 * 117.50345 * 0.02562 * 5 3 2 37 37 H 1.09008 * 117.49719 * 145.02779 * 5 3 2 38 38 H 1.08997 * 109.61382 * 244.54321 * 11 10 8 39 39 H 1.09010 * 109.61011 * 5.05328 * 11 10 8 40 40 H 1.08997 * 109.74436 * 289.85057 * 12 11 10 41 41 H 1.09001 * 109.67389 * 169.38831 * 12 11 10 42 42 H 1.09004 * 109.46800 * 299.99588 * 16 14 13 43 43 H 1.08994 * 109.47378 * 59.99552 * 16 14 13 44 44 H 0.96998 * 120.00273 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.61437 * 295.48126 * 26 13 12 46 46 H 1.09005 * 109.60861 * 174.97227 * 26 13 12 47 47 H 1.08999 * 109.61209 * 354.94891 * 27 10 8 48 48 H 1.09001 * 109.60882 * 115.46225 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1863 2.4443 0.7801 5 6 2.7401 1.9446 -1.2644 6 6 3.5550 1.6561 -0.0020 7 1 4.1884 0.7690 -0.0037 8 6 4.0922 2.8372 0.7645 9 8 3.3308 3.5753 1.3529 10 7 5.4187 3.0732 0.7961 11 6 6.3536 2.1837 0.0928 12 6 7.2040 3.0338 -0.8664 13 7 7.7420 4.1817 -0.1229 14 6 9.0686 4.4172 -0.0905 15 8 9.5010 5.3673 0.5267 16 6 10.0148 3.4997 -0.8214 17 16 11.7146 4.0768 -0.5895 18 6 12.5814 2.8579 -1.5209 19 1 12.0362 2.0676 -2.0154 20 6 13.9647 2.9139 -1.6197 21 7 14.6291 3.8774 -1.0173 22 14 14.8836 1.6221 -2.6076 23 1 14.4215 1.6566 -4.0185 24 1 16.3408 1.9036 -2.5566 25 1 14.6190 0.2786 -2.0329 26 6 6.8075 5.0679 0.5850 27 6 5.9568 4.2208 1.5400 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.3357 3.4441 0.3723 34 1 1.4803 2.4324 1.8296 35 1 0.1348 2.1701 0.6941 36 1 2.8370 1.2475 -2.0966 37 1 2.5925 2.9888 -1.5405 38 1 7.0000 1.6867 0.8162 39 1 5.7942 1.4392 -0.4738 40 1 6.5853 3.3892 -1.6904 41 1 8.0256 2.4341 -1.2581 42 1 9.9172 2.4882 -0.4271 43 1 9.7731 3.5002 -1.8842 44 1 15.5958 3.9164 -1.0860 45 1 6.1606 5.5681 -0.1356 46 1 7.3673 5.8100 1.1544 47 1 5.1353 4.8221 1.9294 48 1 6.5757 3.8651 2.3638 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574744343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:30 Heat of formation + Delta-G solvation = -38.085385 kcal Electronic energy + Delta-G solvation = -27374.638154 eV Core-core repulsion = 23556.944165 eV Total energy + Delta-G solvation = -3817.693988 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94033 -39.68365 -38.07626 -36.75658 -34.09187 -32.75826 -32.46728 -31.88215 -29.45087 -28.50647 -27.57081 -25.56188 -24.94594 -24.19810 -23.77685 -22.29314 -20.25633 -19.17757 -18.51003 -17.91250 -17.35713 -16.56156 -16.16212 -15.73182 -15.63914 -15.49045 -15.25202 -14.98660 -14.84030 -14.36863 -14.05182 -14.00348 -13.59954 -13.36719 -13.15634 -12.99666 -12.80145 -12.65581 -12.55034 -12.47899 -12.11033 -11.96125 -11.76372 -11.74325 -11.53319 -11.45417 -11.18343 -11.08366 -11.07222 -10.80045 -10.47412 -10.14376 -9.85823 -9.70649 -9.48027 -9.34144 -9.09636 -8.42431 -8.27996 -6.54973 -6.25178 -3.96561 2.20751 2.49562 2.92061 2.96542 3.20331 3.22427 3.26199 3.38787 3.52036 4.01570 4.16227 4.24601 4.35646 4.47511 4.56602 4.60669 4.68149 4.83646 4.88223 4.91237 5.01189 5.03135 5.09569 5.12255 5.23759 5.28266 5.31482 5.38341 5.46869 5.49838 5.54627 5.55270 5.58138 5.67270 5.68851 5.74203 5.74856 5.80955 5.85454 5.91434 6.02751 6.17234 6.27393 6.47487 7.08014 7.43371 7.55142 7.91955 8.30782 8.45459 9.19801 10.82102 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.002161 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.237063 B =12951.802789 C =14102.081133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.088 4.088 4 C -0.108 4.108 5 C -0.145 4.145 6 C -0.192 4.192 7 H 0.124 0.876 8 C 0.547 3.453 9 O -0.536 6.536 10 N -0.609 5.609 11 C 0.091 3.909 12 C 0.095 3.905 13 N -0.622 5.622 14 C 0.536 3.464 15 O -0.513 6.513 16 C -0.151 4.151 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.101 3.899 27 C 0.099 3.901 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.269 0.731 45 H 0.068 0.932 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.141 -8.030 0.140 28.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.089 4.089 4 C -0.165 4.165 5 C -0.182 4.182 6 C -0.213 4.213 7 H 0.141 0.859 8 C 0.335 3.665 9 O -0.413 6.413 10 N -0.342 5.342 11 C -0.033 4.033 12 C -0.029 4.029 13 N -0.359 5.359 14 C 0.324 3.676 15 O -0.387 6.387 16 C -0.302 4.302 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.023 4.023 27 C -0.024 4.024 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.698 -6.112 1.423 27.426 hybrid contribution 0.416 -2.086 -1.463 2.581 sum -26.282 -8.198 -0.039 27.531 Atomic orbital electron populations 1.21828 0.95190 1.01541 1.02323 1.21103 0.96363 0.92938 1.02149 1.21615 0.90608 0.97122 0.99550 1.21462 0.97502 0.97196 1.00354 1.23211 1.01414 1.02938 0.90628 1.22379 0.96106 0.99271 1.03512 0.85864 1.19702 0.81377 0.85160 0.80221 1.90692 1.56160 1.49048 1.45371 1.48028 1.05839 1.28569 1.51804 1.22323 0.92365 0.92596 0.95975 1.22166 0.98757 0.88083 0.93936 1.48058 1.06008 1.28812 1.52981 1.20389 0.81430 0.85524 0.80285 1.90699 1.75938 1.29955 1.42111 1.23557 1.02677 1.01552 1.02390 1.85447 0.90297 1.38907 1.68632 1.22803 0.94209 1.14306 1.37161 0.90973 1.24995 0.96545 0.96346 0.95685 1.70004 1.08298 1.30978 1.40911 0.86224 0.78369 0.80860 0.80043 1.19925 1.20802 1.19932 1.21906 0.91630 0.93116 0.95613 1.22047 0.98355 0.87831 0.94203 0.92487 0.92727 0.91960 0.91596 0.91433 0.91850 0.91532 0.92487 0.87756 0.88277 0.90398 0.88353 0.90894 0.87932 0.89219 0.89209 0.92083 0.91406 0.87619 0.87904 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.92 37.15 0.33 -0.47 16 2 C -0.09 -0.51 6.12 -26.73 -0.16 -0.68 16 3 C -0.09 -0.66 2.47 -154.51 -0.38 -1.04 16 4 C -0.11 -0.95 7.74 37.16 0.29 -0.67 16 5 C -0.14 -0.97 9.53 -26.73 -0.25 -1.23 16 6 C -0.19 -1.48 4.71 -91.78 -0.43 -1.91 16 7 H 0.12 0.74 6.77 -51.93 -0.35 0.39 16 8 C 0.55 5.77 7.46 -10.99 -0.08 5.69 16 9 O -0.54 -7.14 12.51 5.56 0.07 -7.07 16 10 N -0.61 -6.06 2.94 -172.19 -0.51 -6.57 16 11 C 0.09 0.74 6.50 -3.37 -0.02 0.72 16 12 C 0.10 0.92 6.52 -3.36 -0.02 0.90 16 13 N -0.62 -8.36 2.95 -172.19 -0.51 -8.87 16 14 C 0.54 9.75 7.72 -10.98 -0.08 9.67 16 15 O -0.51 -11.40 15.27 5.56 0.08 -11.32 16 16 C -0.15 -2.92 4.50 36.01 0.16 -2.75 16 17 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 18 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 19 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.77 13.22 55.49 0.73 -25.03 16 22 Si 0.92 20.95 29.55 -169.99 -5.02 15.93 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 26 C 0.10 1.22 6.59 -3.58 -0.02 1.19 16 27 C 0.10 1.07 6.59 -3.58 -0.02 1.04 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.34 6.44 -51.93 -0.33 0.01 16 31 H 0.07 0.33 7.90 -51.93 -0.41 -0.08 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.65 7.02 -51.93 -0.36 0.29 16 34 H 0.07 0.70 7.26 -51.93 -0.38 0.32 16 35 H 0.06 0.41 5.58 -51.93 -0.29 0.12 16 36 H 0.10 0.52 8.05 -51.93 -0.42 0.10 16 37 H 0.10 0.75 8.05 -51.92 -0.42 0.34 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.55 5.62 -51.92 -0.29 0.25 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.95 5.91 -51.93 -0.31 0.64 16 42 H 0.09 1.56 7.72 -51.91 -0.40 1.16 16 43 H 0.09 1.59 7.91 -51.92 -0.41 1.18 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.11 1.42 6.99 -51.93 -0.36 1.06 16 47 H 0.10 1.13 6.99 -51.93 -0.36 0.77 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -34.73 390.02 -9.60 -44.33 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.60 Total: -1.33 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -0.51 Total: -2.16 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: -0.28 Total: -40.47 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.15 Total: -18.38 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.73 -9.60 -44.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574744343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.240 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds