Wall clock time and date at job start Sat Apr 11 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47345 * 2 1 4 4 C 1.52997 * 115.54950 * 34.41103 * 3 2 1 5 5 C 1.52999 * 117.51269 * 248.71174 * 3 2 1 6 6 C 1.52994 * 117.49816 * 180.08442 * 3 2 1 7 7 H 1.09002 * 117.50456 * 0.02562 * 6 3 2 8 8 C 1.50699 * 117.49943 * 214.99665 * 6 3 2 9 9 O 1.21278 * 120.00004 * 0.02562 * 8 6 3 10 10 N 1.34777 * 120.00241 * 180.02562 * 8 6 3 11 11 C 1.46960 * 120.59428 * 359.72071 * 10 8 6 12 12 C 1.53814 * 108.39723 * 124.75762 * 11 10 8 13 13 N 1.46966 * 108.57749 * 49.63959 * 12 11 10 14 14 C 1.34775 * 120.59210 * 124.62316 * 13 12 11 15 15 O 1.21277 * 120.00305 * 180.02562 * 14 13 12 16 16 C 1.50706 * 120.00072 * 0.02587 * 14 13 12 17 17 S 1.81003 * 109.47165 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99995 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99812 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99825 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00230 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00089 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46859 * 60.00256 * 22 20 18 24 24 H 1.48502 * 109.47608 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47174 * 300.00730 * 22 20 18 26 26 C 1.46957 * 118.81110 * 304.64499 * 13 12 11 27 27 C 1.46966 * 120.59362 * 180.02562 * 10 8 6 28 28 H 1.09003 * 109.46769 * 60.00378 * 1 2 3 29 29 H 1.09005 * 109.47491 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47401 * 300.00352 * 1 2 3 31 31 H 1.08999 * 109.47401 * 239.99648 * 2 1 3 32 32 H 1.09003 * 109.46769 * 119.99622 * 2 1 3 33 33 H 1.09002 * 109.47153 * 205.67229 * 4 3 2 34 34 H 1.09001 * 109.46832 * 85.67420 * 4 3 2 35 35 H 1.09004 * 109.47261 * 325.67402 * 4 3 2 36 36 H 1.08994 * 117.50345 * 0.02562 * 5 3 2 37 37 H 1.09008 * 117.49719 * 145.02779 * 5 3 2 38 38 H 1.08997 * 109.61382 * 244.54321 * 11 10 8 39 39 H 1.09010 * 109.61011 * 5.05328 * 11 10 8 40 40 H 1.08997 * 109.74436 * 289.85057 * 12 11 10 41 41 H 1.09001 * 109.67389 * 169.38831 * 12 11 10 42 42 H 1.09004 * 109.46800 * 299.99588 * 16 14 13 43 43 H 1.08994 * 109.47378 * 59.99552 * 16 14 13 44 44 H 0.96998 * 120.00273 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.61437 * 295.48126 * 26 13 12 46 46 H 1.09005 * 109.60861 * 174.97227 * 26 13 12 47 47 H 1.08999 * 109.61209 * 354.94891 * 27 10 8 48 48 H 1.09001 * 109.60882 * 115.46225 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1863 2.4443 0.7801 5 6 2.7401 1.9446 -1.2644 6 6 3.5550 1.6561 -0.0020 7 1 4.1884 0.7690 -0.0037 8 6 4.0922 2.8372 0.7645 9 8 3.3308 3.5753 1.3529 10 7 5.4187 3.0732 0.7961 11 6 6.3536 2.1837 0.0928 12 6 7.2040 3.0338 -0.8664 13 7 7.7420 4.1817 -0.1229 14 6 9.0686 4.4172 -0.0905 15 8 9.5010 5.3673 0.5267 16 6 10.0148 3.4997 -0.8214 17 16 11.7146 4.0768 -0.5895 18 6 12.5814 2.8579 -1.5209 19 1 12.0362 2.0676 -2.0154 20 6 13.9647 2.9139 -1.6197 21 7 14.6291 3.8774 -1.0173 22 14 14.8836 1.6221 -2.6076 23 1 14.4215 1.6566 -4.0185 24 1 16.3408 1.9036 -2.5566 25 1 14.6190 0.2786 -2.0329 26 6 6.8075 5.0679 0.5850 27 6 5.9568 4.2208 1.5400 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.3357 3.4441 0.3723 34 1 1.4803 2.4324 1.8296 35 1 0.1348 2.1701 0.6941 36 1 2.8370 1.2475 -2.0966 37 1 2.5925 2.9888 -1.5405 38 1 7.0000 1.6867 0.8162 39 1 5.7942 1.4392 -0.4738 40 1 6.5853 3.3892 -1.6904 41 1 8.0256 2.4341 -1.2581 42 1 9.9172 2.4882 -0.4271 43 1 9.7731 3.5002 -1.8842 44 1 15.5958 3.9164 -1.0860 45 1 6.1606 5.5681 -0.1356 46 1 7.3673 5.8100 1.1544 47 1 5.1353 4.8221 1.9294 48 1 6.5757 3.8651 2.3638 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574744343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:29 Heat of formation + Delta-G solvation = -59.311559 kcal Electronic energy + Delta-G solvation = -27375.558590 eV Core-core repulsion = 23556.944165 eV Total energy + Delta-G solvation = -3818.614424 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.77909 -40.80847 -38.91942 -37.74096 -35.17199 -34.56457 -33.38215 -32.68837 -30.79216 -29.24233 -28.51629 -27.63727 -25.76630 -24.73948 -24.52168 -23.22715 -21.22584 -20.08247 -19.68189 -19.12284 -18.54014 -17.66984 -17.20226 -16.86097 -16.76052 -16.74676 -16.41912 -15.94063 -15.78361 -15.47576 -15.09694 -14.99107 -14.71363 -14.49550 -14.46048 -13.92415 -13.67179 -13.49972 -13.46612 -13.24581 -13.15917 -12.99681 -12.84819 -12.78120 -12.65523 -12.60738 -12.47661 -12.40615 -11.98225 -11.72331 -11.64035 -11.10968 -11.03235 -10.94339 -10.78042 -10.45300 -10.33801 -10.23901 -9.43114 -8.65966 -8.32657 -6.11148 1.23997 1.41814 1.45282 1.45736 1.55180 1.56751 1.77835 2.14100 2.28970 2.80302 3.01652 3.23931 3.36613 3.59908 3.69417 3.74044 3.83877 3.90373 4.07169 4.10492 4.12476 4.16682 4.22615 4.33486 4.44170 4.47313 4.49496 4.56480 4.61516 4.63489 4.73439 4.78884 4.88195 4.90611 4.94802 5.00696 5.05984 5.15249 5.23390 5.33848 5.36418 5.41101 5.43623 5.43924 5.60897 6.16633 6.21633 6.35174 7.07990 7.08763 7.12586 8.76133 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.002161 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.237063 B =12951.802789 C =14102.081133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 C -0.097 4.097 4 C -0.103 4.103 5 C -0.131 4.131 6 C -0.194 4.194 7 H 0.149 0.851 8 C 0.541 3.459 9 O -0.571 6.571 10 N -0.609 5.609 11 C 0.094 3.906 12 C 0.087 3.913 13 N -0.609 5.609 14 C 0.535 3.465 15 O -0.565 6.565 16 C -0.123 4.123 17 S -0.156 6.156 18 C -0.543 4.543 19 H 0.087 0.913 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.261 1.261 24 H -0.282 1.282 25 H -0.260 1.260 26 C 0.104 3.896 27 C 0.107 3.893 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.131 0.869 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.270 0.730 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.647 -11.432 -2.070 30.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 C -0.097 4.097 4 C -0.160 4.160 5 C -0.168 4.168 6 C -0.214 4.214 7 H 0.167 0.833 8 C 0.331 3.669 9 O -0.450 6.450 10 N -0.342 5.342 11 C -0.029 4.029 12 C -0.036 4.036 13 N -0.344 5.344 14 C 0.323 3.677 15 O -0.443 6.443 16 C -0.274 4.274 17 S 0.071 5.929 18 C -0.691 4.691 19 H 0.105 0.895 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.820 3.180 23 H -0.185 1.185 24 H -0.208 1.208 25 H -0.185 1.185 26 C -0.019 4.019 27 C -0.017 4.017 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.149 0.851 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.152 0.848 40 H 0.111 0.889 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.117 0.883 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.257 -9.555 -0.807 29.840 hybrid contribution 0.692 -0.982 -0.736 1.409 sum -27.565 -10.537 -1.543 29.551 Atomic orbital electron populations 1.21829 0.95081 1.02058 1.01999 1.21107 0.96450 0.91658 1.02900 1.21680 0.90255 0.97748 1.00054 1.21353 0.98749 0.96799 0.99090 1.23281 0.99836 1.02915 0.90780 1.22441 0.96494 0.98719 1.03786 0.83305 1.20286 0.81139 0.85591 0.79878 1.90689 1.57005 1.50471 1.46870 1.48113 1.06161 1.28340 1.51598 1.22479 0.92155 0.92420 0.95843 1.22532 0.99570 0.86986 0.94473 1.48039 1.04461 1.29660 1.52203 1.20231 0.82855 0.84748 0.79888 1.90687 1.77194 1.32001 1.44454 1.23369 0.97548 1.02428 1.04022 1.85686 0.96769 1.40948 1.69495 1.23161 0.94759 1.14289 1.36869 0.89530 1.26143 0.97673 0.98697 0.96786 1.70185 1.08555 1.33342 1.42802 0.85006 0.76508 0.77889 0.78615 1.18548 1.20771 1.18478 1.21924 0.91181 0.92921 0.95874 1.21843 0.97790 0.88243 0.93824 0.92376 0.91802 0.92749 0.89897 0.91555 0.93887 0.93801 0.91247 0.85052 0.89513 0.90292 0.84782 0.88949 0.86893 0.86791 0.87061 0.92092 0.90249 0.89538 0.88328 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.92 71.98 0.64 -0.63 16 2 C -0.08 -0.72 6.12 30.59 0.19 -0.54 16 3 C -0.10 -1.22 2.47 -52.18 -0.13 -1.35 16 4 C -0.10 -1.78 7.74 71.98 0.56 -1.23 16 5 C -0.13 -1.32 9.53 30.59 0.29 -1.03 16 6 C -0.19 -2.38 4.71 -11.54 -0.05 -2.44 16 7 H 0.15 1.06 6.77 -2.39 -0.02 1.04 16 8 C 0.54 10.53 7.46 87.66 0.65 11.18 16 9 O -0.57 -15.19 12.51 -3.02 -0.04 -15.23 16 10 N -0.61 -10.88 2.94 -817.08 -2.40 -13.29 16 11 C 0.09 1.17 6.50 86.57 0.56 1.74 16 12 C 0.09 1.38 6.52 86.56 0.56 1.94 16 13 N -0.61 -15.46 2.95 -817.09 -2.41 -17.87 16 14 C 0.53 19.27 7.72 87.66 0.68 19.95 16 15 O -0.57 -25.96 15.27 -3.02 -0.05 -26.01 16 16 C -0.12 -4.58 4.50 71.24 0.32 -4.26 16 17 S -0.16 -8.46 20.57 -56.49 -1.16 -9.63 16 18 C -0.54 -29.96 9.50 67.95 0.65 -29.31 16 19 H 0.09 4.34 7.80 -2.91 -0.02 4.32 16 20 C 0.01 0.65 5.49 84.86 0.47 1.12 16 21 N -0.91 -55.36 13.22 21.65 0.29 -55.08 16 22 Si 1.00 42.34 29.55 68.60 2.03 44.37 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 26 C 0.10 2.48 6.59 86.43 0.57 3.05 16 27 C 0.11 2.25 6.59 86.43 0.57 2.82 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.05 0.53 6.44 -2.39 -0.02 0.52 16 31 H 0.08 0.46 7.90 -2.39 -0.02 0.44 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.04 0.90 7.02 -2.39 -0.02 0.88 16 34 H 0.04 0.94 7.26 -2.39 -0.02 0.92 16 35 H 0.07 0.97 5.58 -2.38 -0.01 0.96 16 36 H 0.13 0.66 8.05 -2.39 -0.02 0.64 16 37 H 0.09 1.13 8.05 -2.38 -0.02 1.11 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.13 0.77 5.62 -2.38 -0.01 0.76 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.11 1.61 5.91 -2.39 -0.01 1.59 16 42 H 0.11 3.70 7.72 -2.39 -0.02 3.68 16 43 H 0.11 3.68 7.91 -2.40 -0.02 3.66 16 44 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 45 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.09 2.43 6.99 -2.38 -0.02 2.41 16 47 H 0.10 2.20 6.99 -2.39 -0.02 2.18 16 48 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -79.48 390.02 3.74 -75.74 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.96 Total: 15.97 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 6.52 Total: 1.02 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -4.52 Total: -86.23 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -0.08 Total: -41.24 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.63 kcal Total: -79.48 3.74 -75.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574744343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.429 kcal (2) G-P(sol) polarization free energy of solvation -79.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds