Wall clock time and date at job start Sat Apr 11 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47055 * 2 1 4 4 C 1.52995 * 109.47081 * 178.95420 * 3 2 1 5 5 C 1.50703 * 115.55258 * 294.56964 * 4 3 2 6 6 O 1.21283 * 120.00337 * 100.03020 * 5 4 3 7 7 N 1.34781 * 119.99682 * 280.03513 * 5 4 3 8 8 C 1.46499 * 119.99749 * 174.73653 * 7 5 4 9 9 H 1.08997 * 110.78164 * 323.21275 * 8 7 5 10 10 C 1.55156 * 110.71911 * 199.97051 * 8 7 5 11 11 C 1.55133 * 101.48837 * 205.96800 * 10 8 7 12 12 N 1.47432 * 104.71732 * 37.29723 * 11 10 8 13 13 C 1.34775 * 125.64295 * 155.81364 * 12 11 10 14 14 O 1.21281 * 119.99912 * 179.69034 * 13 12 11 15 15 C 1.50706 * 120.00249 * 359.42017 * 13 12 11 16 16 S 1.80995 * 109.46899 * 180.27233 * 15 13 12 17 17 C 1.76205 * 99.99819 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99959 * 0.02562 * 17 16 15 19 19 C 1.38799 * 119.99715 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00340 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99627 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46923 * 89.99939 * 21 19 17 23 23 H 1.48500 * 109.47162 * 209.99801 * 21 19 17 24 24 H 1.48504 * 109.47109 * 330.00108 * 21 19 17 25 25 C 1.47016 * 108.70440 * 335.55475 * 12 11 10 26 26 C 1.53004 * 117.51945 * 80.26677 * 4 3 2 27 27 C 1.52998 * 117.50042 * 148.89519 * 4 3 2 28 28 H 1.08997 * 109.47168 * 299.99939 * 1 2 3 29 29 H 1.09005 * 109.46957 * 60.00341 * 1 2 3 30 30 H 1.08997 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47168 * 240.00061 * 2 1 3 32 32 H 1.09002 * 109.46702 * 120.00386 * 2 1 3 33 33 H 1.08997 * 109.47028 * 58.95847 * 3 2 1 34 34 H 1.09001 * 109.47391 * 298.95699 * 3 2 1 35 35 H 0.96996 * 119.99715 * 354.72980 * 7 5 4 36 36 H 1.08996 * 111.00630 * 324.20929 * 10 8 7 37 37 H 1.09006 * 111.00404 * 88.06344 * 10 8 7 38 38 H 1.08998 * 110.49735 * 278.45994 * 11 10 8 39 39 H 1.08998 * 110.34357 * 156.05768 * 11 10 8 40 40 H 1.08999 * 109.46999 * 300.27164 * 15 13 12 41 41 H 1.09000 * 109.47022 * 60.27123 * 15 13 12 42 42 H 0.97004 * 119.99650 * 179.97438 * 20 19 17 43 43 H 1.08993 * 109.88463 * 120.70498 * 25 12 11 44 44 H 1.09007 * 109.87798 * 241.87075 * 25 12 11 45 45 H 1.08998 * 117.49956 * 214.97489 * 26 4 3 46 46 H 1.08995 * 117.49625 * 359.97438 * 26 4 3 47 47 H 1.08994 * 117.49947 * 359.97438 * 27 4 3 48 48 H 1.09001 * 117.49669 * 144.99770 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5697 1.4426 0.0263 5 6 4.1984 0.8848 1.2773 6 8 4.6250 -0.2505 1.2873 7 7 4.2864 1.6476 2.3849 8 6 4.7911 1.0707 3.6334 9 1 4.4572 0.0392 3.7455 10 6 4.3506 1.9258 4.8508 11 6 5.4673 1.6003 5.8773 12 7 6.6982 1.4990 5.0722 13 6 7.9526 1.6850 5.5285 14 8 8.8955 1.5704 4.7743 15 6 8.1834 2.0413 6.9745 16 16 9.9585 2.2308 7.2732 17 6 9.9387 2.6345 8.9883 18 1 8.9995 2.6962 9.5177 19 6 11.1304 2.8722 9.6590 20 7 12.2753 2.7956 9.0141 21 14 11.1095 3.2996 11.4774 22 1 11.1947 2.0529 12.2798 23 1 12.2684 4.1723 11.7941 24 1 9.8486 4.0131 11.8037 25 6 6.3310 1.1554 3.6907 26 6 4.2996 1.2051 -1.2973 27 6 4.2882 2.6003 -0.6696 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6615 1.9616 0.8805 34 1 1.6920 1.9509 -0.8992 35 1 4.0157 2.5786 2.3554 36 1 4.3424 2.9866 4.6006 37 1 3.3766 1.6058 5.2211 38 1 5.2620 0.6537 6.3772 39 1 5.5568 2.4045 6.6076 40 1 7.6745 2.9775 7.2037 41 1 7.7904 1.2487 7.6112 42 1 13.1081 2.9621 9.4829 43 1 6.6853 1.9290 3.0096 44 1 6.7655 0.1930 3.4201 45 1 5.2343 0.6454 -1.2632 46 1 3.6899 1.0483 -2.1870 47 1 3.6711 3.3617 -1.1465 48 1 5.2155 2.9586 -0.2225 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576121452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:35 Heat of formation + Delta-G solvation = -57.978037 kcal Electronic energy + Delta-G solvation = -26804.204064 eV Core-core repulsion = 22985.647465 eV Total energy + Delta-G solvation = -3818.556599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.77454 -39.64670 -37.79810 -36.92791 -34.41743 -34.24517 -32.43430 -31.03438 -29.72433 -28.27518 -27.69291 -25.50606 -24.34389 -23.16037 -23.01685 -21.87960 -21.22553 -19.94852 -19.26955 -17.77460 -17.22492 -17.07804 -16.52925 -15.91765 -15.78312 -15.37007 -15.09698 -14.80838 -14.61581 -14.36795 -13.95379 -13.89685 -13.75981 -13.48007 -13.37771 -12.90629 -12.66284 -12.56915 -12.51273 -12.24002 -12.14906 -11.97811 -11.89187 -11.80045 -11.73095 -11.17927 -11.15734 -11.06557 -11.02707 -10.81715 -10.77164 -10.43367 -10.01161 -9.82776 -9.57920 -9.33524 -9.07093 -8.54133 -8.23643 -6.50860 -6.21913 -3.92820 2.26396 2.56398 2.98474 3.06062 3.20286 3.21948 3.26469 3.30189 3.61056 4.05712 4.09847 4.19572 4.29515 4.30712 4.39650 4.49273 4.68573 4.71266 4.78532 4.92762 4.95620 5.06250 5.08268 5.13155 5.18752 5.22216 5.32227 5.39473 5.41431 5.41996 5.43201 5.48747 5.58316 5.64898 5.67486 5.70235 5.70827 5.79745 5.82094 5.90845 5.93110 6.11199 6.13248 6.38614 7.13072 7.58782 7.63066 7.88947 8.34680 8.54477 9.23158 10.85495 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.001875 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.152512 B =14933.491149 C =15467.435326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.072 4.072 4 C -0.159 4.159 5 C 0.553 3.447 6 O -0.527 6.527 7 N -0.717 5.717 8 C 0.136 3.864 9 H 0.104 0.896 10 C -0.138 4.138 11 C 0.102 3.898 12 N -0.626 5.626 13 C 0.548 3.452 14 O -0.513 6.513 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.101 3.899 26 C -0.143 4.143 27 C -0.164 4.164 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.404 0.596 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.829 -0.304 -17.371 31.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.109 4.109 4 C -0.162 4.162 5 C 0.338 3.662 6 O -0.402 6.402 7 N -0.369 5.369 8 C 0.030 3.970 9 H 0.122 0.878 10 C -0.176 4.176 11 C -0.021 4.021 12 N -0.365 5.365 13 C 0.336 3.664 14 O -0.387 6.387 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.024 4.024 26 C -0.181 4.181 27 C -0.201 4.201 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.239 0.761 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.832 -1.289 -18.438 30.956 hybrid contribution -1.203 0.858 2.082 2.553 sum -26.034 -0.431 -16.357 30.749 Atomic orbital electron populations 1.21773 0.95667 1.01823 1.01663 1.21496 0.95584 0.96202 1.02907 1.21082 0.89274 0.97799 1.02777 1.21489 0.95952 1.05842 0.92918 1.19571 0.77736 0.85416 0.83437 1.90739 1.46976 1.18785 1.83651 1.45921 1.66507 1.14753 1.09719 1.21982 0.92936 0.99010 0.83076 0.87783 1.23122 0.99172 1.00734 0.94605 1.22318 0.83217 1.02337 0.94262 1.48459 1.05808 1.72218 1.09986 1.20066 0.80447 0.75950 0.89908 1.90719 1.40403 1.49491 1.58077 1.23507 1.08061 1.04127 0.93974 1.85439 0.94612 1.91312 1.12031 1.22856 0.95685 1.55145 0.94674 0.90913 1.24996 0.94564 0.94828 0.99201 1.70020 0.97620 1.46068 1.36517 0.86165 0.77882 0.78459 0.82963 1.20259 1.20743 1.19699 1.22222 0.94113 1.01701 0.84365 1.22990 1.02261 0.98567 0.94258 1.23166 1.02232 0.91793 1.02945 0.92772 0.92778 0.92616 0.91603 0.91791 0.91168 0.90781 0.76143 0.89765 0.89028 0.90843 0.89673 0.89269 0.89221 0.92168 0.91337 0.90911 0.87965 0.87810 0.87723 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.82 5.82 -26.73 -0.16 -0.97 16 3 C -0.07 -0.39 5.09 -26.74 -0.14 -0.53 16 4 C -0.16 -1.12 1.87 -155.66 -0.29 -1.41 16 5 C 0.55 5.45 6.36 -10.98 -0.07 5.38 16 6 O -0.53 -7.41 16.78 5.56 0.09 -7.32 16 7 N -0.72 -5.64 5.13 -52.03 -0.27 -5.91 16 8 C 0.14 1.25 3.19 -66.09 -0.21 1.04 16 9 H 0.10 1.05 7.78 -51.93 -0.40 0.64 16 10 C -0.14 -0.95 6.71 -24.46 -0.16 -1.12 16 11 C 0.10 1.02 6.71 -2.40 -0.02 1.00 16 12 N -0.63 -9.18 3.32 -170.37 -0.57 -9.75 16 13 C 0.55 10.84 7.87 -10.98 -0.09 10.75 16 14 O -0.51 -12.36 16.19 5.56 0.09 -12.27 16 15 C -0.15 -3.01 5.16 36.01 0.19 -2.82 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 21 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.10 1.33 6.62 -3.06 -0.02 1.31 16 26 C -0.14 -1.00 9.87 -26.73 -0.26 -1.27 16 27 C -0.16 -0.94 9.92 -26.73 -0.27 -1.21 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.54 7.69 -51.93 -0.40 0.14 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.32 8.09 -51.93 -0.42 -0.11 16 35 H 0.40 2.16 8.52 -40.82 -0.35 1.82 16 36 H 0.08 0.51 8.00 -51.93 -0.42 0.10 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.81 7.47 -51.93 -0.39 0.42 16 40 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.07 0.96 8.03 -51.93 -0.42 0.55 16 44 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 45 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 411.55 15.07 6.20 6.20 Total: -1.00 -36.80 411.55 -10.12 -46.91 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.24 Total: -1.60 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.93 Total: -3.24 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.10 Total: -41.17 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.18 Total: -19.59 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.80 -10.12 -46.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576121452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.063 kcal (2) G-P(sol) polarization free energy of solvation -36.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds