Wall clock time and date at job start Sat Apr 11 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 120.00182 * 2 1 4 4 C 1.53001 * 109.47192 * 124.99631 * 3 2 1 5 5 C 1.53002 * 109.47078 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46879 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00156 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99787 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99920 * 180.02562 * 8 6 5 10 10 C 1.53070 * 109.44278 * 84.79819 * 9 8 6 11 11 C 1.53195 * 109.29524 * 181.23594 * 10 9 8 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 9 13 13 C 1.34783 * 120.63144 * 233.55709 * 12 11 10 14 14 O 1.21274 * 119.99655 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99922 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.46922 * 180.02562 * 15 13 12 17 17 C 1.76204 * 99.99932 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00106 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99685 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00277 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46948 * 90.00349 * 21 19 17 23 23 H 1.48500 * 109.47056 * 210.00208 * 21 19 17 24 24 H 1.48492 * 109.47222 * 330.00387 * 21 19 17 25 25 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 26 26 C 1.53039 * 109.46033 * 205.00305 * 9 8 6 27 27 H 1.08000 * 120.00109 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.00286 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00286 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46921 * 5.00367 * 3 2 1 31 31 H 1.08999 * 109.47373 * 244.99734 * 3 2 1 32 32 H 1.09004 * 109.46756 * 60.00068 * 4 3 2 33 33 H 1.08992 * 109.47354 * 300.00558 * 4 3 2 34 34 H 1.08998 * 109.46587 * 60.00401 * 5 4 3 35 35 H 1.09002 * 109.46993 * 300.00300 * 5 4 3 36 36 H 0.97004 * 120.00060 * 0.02562 * 8 6 5 37 37 H 1.09007 * 109.45852 * 324.97047 * 9 8 6 38 38 H 1.08997 * 109.38860 * 61.35781 * 10 9 8 39 39 H 1.09003 * 109.62046 * 301.25123 * 10 9 8 40 40 H 1.09002 * 109.58720 * 185.71834 * 11 10 9 41 41 H 1.08996 * 109.58651 * 65.43731 * 11 10 9 42 42 H 1.09001 * 109.47385 * 300.00399 * 15 13 12 43 43 H 1.08997 * 109.47457 * 60.00250 * 15 13 12 44 44 H 0.96997 * 119.99912 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.58787 * 66.18123 * 25 12 11 46 46 H 1.09007 * 109.58600 * 186.46436 * 25 12 11 47 47 H 1.09002 * 109.49876 * 58.67575 * 26 9 8 48 48 H 1.09005 * 109.52615 * 298.59825 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8005 2.6579 1.1813 6 6 4.7578 2.6852 2.3449 7 8 4.8219 1.7381 3.0998 8 7 5.5435 3.7616 2.5459 9 6 6.4745 3.7879 3.6767 10 6 7.7771 3.0882 3.2806 11 6 8.7363 3.0905 4.4751 12 7 8.9088 4.4720 4.9441 13 6 10.1402 5.0040 5.0753 14 8 11.1191 4.3411 4.8048 15 6 10.3006 6.4229 5.5571 16 16 12.0603 6.8413 5.6261 17 6 11.9573 8.5029 6.2036 18 1 10.9928 8.9482 6.3980 19 6 13.1157 9.2393 6.4086 20 7 14.2913 8.6968 6.1711 21 14 13.0065 11.0011 7.0200 22 1 13.0333 11.0122 8.5048 23 1 14.1592 11.7784 6.4983 24 1 11.7404 11.6129 6.5432 25 6 7.7134 5.2629 5.2670 26 6 6.7668 5.2397 4.0628 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 3.7399 0.5065 1.0921 33 1 2.4772 1.2356 2.1130 34 1 3.0958 3.4846 1.2706 35 1 4.3583 2.7549 0.2499 36 1 5.4925 4.5189 1.9419 37 1 6.0294 3.2689 4.5257 38 1 8.2340 3.6198 2.4460 39 1 7.5654 2.0604 2.9859 40 1 9.7010 2.6851 4.1698 41 1 8.3215 2.4811 5.2780 42 1 9.7933 7.0997 4.8696 43 1 9.8643 6.5206 6.5512 44 1 15.1008 9.2116 6.3141 45 1 7.2129 4.8313 6.1338 46 1 8.0034 6.2905 5.4867 47 1 5.8348 5.7416 4.3230 48 1 7.2342 5.7531 3.2226 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576399657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:38 Heat of formation + Delta-G solvation = -73.389571 kcal Electronic energy + Delta-G solvation = -26224.895801 eV Core-core repulsion = 22405.670909 eV Total energy + Delta-G solvation = -3819.224893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51837 -39.56437 -37.42045 -36.36087 -34.72708 -32.91710 -32.44506 -31.84829 -31.21090 -28.96145 -27.69001 -25.53591 -24.81883 -23.43199 -22.54010 -21.12048 -20.63965 -20.20987 -19.13969 -17.80665 -17.24247 -16.94830 -16.43311 -16.08027 -15.66735 -15.47267 -15.33035 -14.82060 -14.64572 -14.37588 -14.17401 -13.92414 -13.87403 -13.78763 -13.24135 -13.05570 -12.87129 -12.69713 -12.40717 -12.19945 -12.12353 -12.00984 -11.83614 -11.47814 -11.35335 -11.17488 -11.14954 -11.07740 -11.03993 -10.92258 -10.77188 -10.13572 -9.82302 -9.76554 -9.44004 -9.29590 -9.08241 -8.57783 -8.24070 -6.51875 -6.23127 -3.93957 1.84268 2.33842 2.78614 2.91234 3.06377 3.20897 3.24506 3.28766 3.57315 4.18421 4.26218 4.29660 4.42216 4.50618 4.54408 4.74423 4.77589 4.80289 4.86681 5.01586 5.04830 5.07285 5.09426 5.12077 5.17698 5.24085 5.32836 5.34975 5.48346 5.51731 5.53394 5.58717 5.69297 5.70120 5.77297 5.84067 5.89007 5.92489 6.03334 6.08460 6.18194 6.19801 6.32698 6.61340 7.16696 7.52650 7.57887 7.91889 8.33376 8.54038 9.22102 10.84290 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031453 B = 0.001625 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.016879 B =17231.823141 C =17752.443582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.142 4.142 6 C 0.512 3.488 7 O -0.539 6.539 8 N -0.729 5.729 9 C 0.145 3.855 10 C -0.142 4.142 11 C 0.116 3.884 12 N -0.622 5.622 13 C 0.535 3.465 14 O -0.516 6.516 15 C -0.151 4.151 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.113 3.887 26 C -0.142 4.142 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.400 0.600 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.081 0.919 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.888 -11.142 -11.309 31.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.182 4.182 6 C 0.298 3.702 7 O -0.415 6.415 8 N -0.380 5.380 9 C 0.041 3.959 10 C -0.181 4.181 11 C -0.007 4.007 12 N -0.358 5.358 13 C 0.323 3.677 14 O -0.390 6.390 15 C -0.302 4.302 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.012 4.012 26 C -0.181 4.181 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.234 0.766 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.114 0.886 47 H 0.100 0.900 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.175 -12.790 -11.157 30.362 hybrid contribution -1.308 2.329 0.361 2.695 sum -26.483 -10.461 -10.796 30.452 Atomic orbital electron populations 1.23860 0.95990 1.01842 1.01699 1.22961 0.96038 0.98599 0.99393 1.20805 0.98197 0.95540 0.98771 1.21285 0.97722 0.96168 0.98623 1.21717 0.98256 1.00784 0.97433 1.20759 0.80771 0.82212 0.86424 1.90721 1.68489 1.35096 1.47220 1.46164 1.40741 1.20005 1.31057 1.20977 0.89177 0.96424 0.89336 1.22306 0.95111 1.01738 0.98967 1.21460 1.00765 0.82964 0.95547 1.48145 1.05867 1.13701 1.68134 1.20340 0.81996 0.88658 0.76680 1.90692 1.37566 1.62125 1.48587 1.23558 1.08221 0.94796 1.03579 1.85432 0.95326 1.15545 1.87129 1.22855 0.95539 0.98248 1.51743 0.90953 1.24986 0.94496 0.99011 0.95025 1.70017 0.97507 1.37165 1.45554 0.86176 0.77903 0.82479 0.78986 1.20255 1.20745 1.19713 1.21639 0.85622 0.97581 0.96325 1.22217 1.00374 0.95711 0.99815 0.88564 0.88642 0.87333 0.91459 0.90873 0.90975 0.91043 0.88885 0.88800 0.76580 0.89218 0.91233 0.90381 0.88545 0.91591 0.89287 0.89233 0.92168 0.91148 0.88608 0.90026 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.06 14.32 29.02 0.42 -0.65 16 2 C -0.15 -0.87 9.52 -36.02 -0.34 -1.21 16 3 C -0.10 -0.47 5.66 -27.88 -0.16 -0.63 16 4 C -0.10 -0.63 4.49 -26.73 -0.12 -0.75 16 5 C -0.14 -0.74 5.70 -27.88 -0.16 -0.89 16 6 C 0.51 4.38 7.79 -10.99 -0.09 4.30 16 7 O -0.54 -6.87 15.65 5.55 0.09 -6.78 16 8 N -0.73 -5.15 5.08 -53.75 -0.27 -5.42 16 9 C 0.15 1.27 2.41 -67.88 -0.16 1.11 16 10 C -0.14 -1.47 5.66 -26.59 -0.15 -1.62 16 11 C 0.12 1.44 6.43 -3.71 -0.02 1.42 16 12 N -0.62 -8.61 2.97 -172.77 -0.51 -9.13 16 13 C 0.54 10.06 7.72 -10.98 -0.08 9.97 16 14 O -0.52 -11.77 15.27 5.56 0.08 -11.68 16 15 C -0.15 -3.00 4.50 36.00 0.16 -2.84 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 21 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 25 C 0.11 1.14 6.34 -3.71 -0.02 1.11 16 26 C -0.14 -1.12 5.55 -26.61 -0.15 -1.26 16 27 H 0.10 0.45 8.06 -52.49 -0.42 0.03 16 28 H 0.10 0.45 7.84 -52.48 -0.41 0.04 16 29 H 0.11 0.60 8.06 -52.48 -0.42 0.17 16 30 H 0.07 0.29 7.79 -51.93 -0.40 -0.11 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.40 1.79 8.60 -40.82 -0.35 1.44 16 37 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 1.39 7.00 -51.93 -0.36 1.02 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.61 7.69 -51.91 -0.40 1.21 16 43 H 0.09 1.64 7.94 -51.92 -0.41 1.23 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.10 0.98 5.93 -51.92 -0.31 0.67 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 406.81 15.07 6.13 6.13 Total: -1.00 -35.97 406.81 -9.75 -45.72 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -8.08 Total: -1.14 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.68 Total: -4.72 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: -0.05 Total: -39.80 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.17 Total: -18.46 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.97 -9.75 -45.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576399657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.674 kcal (2) G-P(sol) polarization free energy of solvation -35.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds