Wall clock time and date at job start Sat Apr 11 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99968 * 2 1 4 4 C 1.53003 * 109.46890 * 120.00767 * 3 2 1 5 5 C 1.53001 * 109.47121 * 240.00244 * 3 2 1 6 6 C 1.52999 * 109.47304 * 300.00136 * 5 3 2 7 7 C 1.50693 * 109.47580 * 0.02562 * 3 2 1 8 8 O 1.21281 * 120.00483 * 240.00348 * 7 3 2 9 9 N 1.34781 * 119.99960 * 59.99769 * 7 3 2 10 10 C 1.46500 * 120.00190 * 180.02562 * 9 7 3 11 11 H 1.08999 * 110.91648 * 322.55086 * 10 9 7 12 12 C 1.55154 * 111.00473 * 198.64917 * 10 9 7 13 13 C 1.54322 * 102.94204 * 206.42028 * 12 10 9 14 14 N 1.47019 * 107.27223 * 22.19795 * 13 12 10 15 15 C 1.34775 * 125.65013 * 181.03860 * 14 13 12 16 16 O 1.21285 * 120.00015 * 180.02562 * 15 14 13 17 17 C 1.50694 * 120.00038 * 0.02562 * 15 14 13 18 18 S 1.81003 * 109.47387 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00290 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99627 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00042 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99968 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99784 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47204 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47370 * 120.00108 * 23 21 19 26 26 H 1.48507 * 109.46932 * 240.00266 * 23 21 19 27 27 C 1.47426 * 108.70209 * 1.05519 * 14 13 12 28 28 H 1.07999 * 120.00154 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00290 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99457 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46833 * 299.99388 * 4 3 2 32 32 H 1.08994 * 109.47527 * 59.99990 * 4 3 2 33 33 H 1.09006 * 109.47001 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.47042 * 60.00149 * 5 3 2 35 35 H 1.08999 * 109.47358 * 179.97438 * 5 3 2 36 36 H 1.08996 * 109.47082 * 299.99989 * 6 5 3 37 37 H 1.09006 * 109.46988 * 59.99919 * 6 5 3 38 38 H 1.08996 * 109.47138 * 179.97438 * 6 5 3 39 39 H 0.97003 * 120.00036 * 0.02562 * 9 7 3 40 40 H 1.08999 * 110.71557 * 88.06123 * 12 10 9 41 41 H 1.09002 * 110.72203 * 324.78645 * 12 10 9 42 42 H 1.09001 * 109.88768 * 262.77536 * 13 12 10 43 43 H 1.09003 * 109.87844 * 141.61039 * 13 12 10 44 44 H 1.09006 * 109.47276 * 300.00339 * 17 15 14 45 45 H 1.08996 * 109.47281 * 59.99913 * 17 15 14 46 46 H 0.97004 * 119.99791 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.36718 * 94.71247 * 27 14 13 48 48 H 1.09005 * 110.36600 * 217.03808 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9432 1.3860 1.2492 5 6 2.9431 1.3862 -1.2493 6 6 3.9373 0.2232 -1.2494 7 6 1.0843 2.4505 0.0006 8 8 1.0890 3.2529 -0.9088 9 7 0.2032 2.5833 1.0118 10 6 -0.7491 3.6966 1.0122 11 1 -0.2877 4.6035 0.6215 12 6 -1.3267 3.9339 2.4326 13 6 -2.6994 4.5775 2.1444 14 7 -3.0802 4.1992 0.7758 15 6 -4.2064 4.5791 0.1403 16 8 -4.4187 4.2047 -0.9936 17 6 -5.2019 5.4692 0.8387 18 16 -6.5966 5.7985 -0.2670 19 6 -7.5750 6.8302 0.7735 20 1 -7.2349 7.0698 1.7701 21 6 -8.7829 7.3350 0.3123 22 7 -9.1977 7.0425 -0.9022 23 14 -9.8199 8.4293 1.4152 24 1 -9.1368 8.6045 2.7221 25 1 -10.0007 9.7541 0.7692 26 1 -11.1470 7.7988 1.6315 27 6 -2.0263 3.3350 0.2136 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 2.3166 1.3283 2.1392 32 1 3.6515 0.5576 1.2491 33 1 3.4886 2.3298 1.2490 34 1 2.3164 1.3285 -2.1392 35 1 3.4877 2.3303 -1.2495 36 1 4.5640 0.2809 -0.3595 37 1 3.3922 -0.7208 -1.2494 38 1 4.5636 0.2808 -2.1396 39 1 0.1996 1.9417 1.7394 40 1 -0.6919 4.6162 2.9979 41 1 -1.4473 2.9891 2.9627 42 1 -2.6239 5.6621 2.2218 43 1 -3.4397 4.2039 2.8519 44 1 -5.5625 4.9737 1.7402 45 1 -4.7217 6.4097 1.1085 46 1 -10.0421 7.3950 -1.2243 47 1 -2.2796 2.2848 0.3583 48 1 -1.8848 3.5495 -0.8457 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578066243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:47 Heat of formation + Delta-G solvation = -51.349817 kcal Electronic energy + Delta-G solvation = -27269.916992 eV Core-core repulsion = 23451.647815 eV Total energy + Delta-G solvation = -3818.269177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07264 -39.65679 -37.54762 -36.70562 -34.63645 -32.46106 -32.42536 -31.03632 -29.88904 -29.64196 -27.81916 -25.75833 -25.47238 -23.71662 -22.36969 -22.10918 -21.08041 -19.47255 -19.17721 -17.74572 -17.09415 -16.87021 -16.56423 -16.38291 -15.64308 -15.17685 -14.82827 -14.80122 -14.61968 -14.34812 -14.13250 -13.88835 -13.75692 -13.59871 -13.23200 -12.93087 -12.67706 -12.60492 -12.57001 -12.41150 -12.18527 -12.08931 -11.93106 -11.87961 -11.71025 -11.26523 -11.15383 -11.06822 -11.01288 -10.86393 -10.76301 -10.04466 -9.84720 -9.80646 -9.50850 -9.32696 -9.07202 -8.53023 -8.22347 -6.49924 -6.21361 -3.92021 1.80984 2.27882 2.56147 3.01270 3.07073 3.21679 3.27021 3.31582 3.62084 4.03514 4.18472 4.20846 4.21404 4.34943 4.50048 4.60301 4.62907 4.83233 4.93279 4.94805 5.05160 5.06213 5.09512 5.12023 5.13813 5.27353 5.37172 5.42213 5.47013 5.50124 5.53103 5.59200 5.65024 5.68324 5.74123 5.79938 5.80990 5.92366 5.97176 6.06683 6.13414 6.15127 6.24712 6.39261 7.08795 7.59803 7.63213 7.86300 8.35655 8.54581 9.23874 10.86140 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031156 B = 0.001962 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.499909 B =14268.512945 C =14631.002730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.050 4.050 4 C -0.139 4.139 5 C -0.098 4.098 6 C -0.154 4.154 7 C 0.526 3.474 8 O -0.525 6.525 9 N -0.721 5.721 10 C 0.130 3.870 11 H 0.106 0.894 12 C -0.136 4.136 13 C 0.104 3.896 14 N -0.625 5.625 15 C 0.549 3.451 16 O -0.512 6.512 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.098 3.902 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.403 0.597 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.066 0.934 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.085 -14.401 9.848 32.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.166 4.166 3 C -0.053 4.053 4 C -0.197 4.197 5 C -0.136 4.136 6 C -0.212 4.212 7 C 0.312 3.688 8 O -0.400 6.400 9 N -0.374 5.374 10 C 0.025 3.975 11 H 0.123 0.877 12 C -0.174 4.174 13 C -0.020 4.020 14 N -0.364 5.364 15 C 0.337 3.663 16 O -0.385 6.385 17 C -0.296 4.296 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.026 4.026 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.239 0.761 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 26.549 -14.302 7.310 31.030 hybrid contribution -0.540 0.764 2.433 2.607 sum 26.009 -13.538 9.743 30.898 Atomic orbital electron populations 1.24434 0.96221 1.03455 0.99318 1.22709 0.95634 0.96831 1.01450 1.20011 0.94964 0.91594 0.98758 1.21886 0.99480 1.03202 0.95098 1.21346 0.96948 0.99451 0.95834 1.21891 0.99000 0.98291 1.01969 1.20523 0.80669 0.86102 0.81516 1.90753 1.70546 1.43547 1.35150 1.46093 1.35484 1.29992 1.25794 1.22125 0.88724 0.90710 0.95978 0.87651 1.22919 0.96117 1.02337 0.96050 1.21957 0.95415 1.00346 0.84240 1.48397 1.20857 1.51781 1.15350 1.20057 0.80096 0.80146 0.85974 1.90723 1.74916 1.55048 1.17862 1.23502 1.00873 1.00690 1.04585 1.85440 1.14280 1.64522 1.19177 1.22896 1.07723 1.35171 1.02484 0.90863 1.24999 0.96788 0.96329 0.95521 1.70030 1.21268 1.42912 1.16016 0.86110 0.79624 0.79714 0.79995 1.19620 1.20555 1.20572 1.22494 0.85916 0.94620 0.99601 0.87267 0.87750 0.86006 0.92079 0.90750 0.91728 0.90996 0.90975 0.92344 0.92423 0.92396 0.76063 0.89148 0.89884 0.90786 0.90747 0.89261 0.89220 0.92225 0.91541 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 13.18 29.01 0.38 -1.02 16 2 C -0.15 -0.91 7.99 -36.03 -0.29 -1.20 16 3 C -0.05 -0.35 0.62 -156.82 -0.10 -0.45 16 4 C -0.14 -0.65 8.00 37.16 0.30 -0.35 16 5 C -0.10 -0.75 4.27 -26.73 -0.11 -0.86 16 6 C -0.15 -0.81 9.30 37.16 0.35 -0.47 16 7 C 0.53 5.14 5.34 -10.99 -0.06 5.08 16 8 O -0.53 -7.47 15.73 5.56 0.09 -7.39 16 9 N -0.72 -5.45 3.41 -51.73 -0.18 -5.63 16 10 C 0.13 1.22 3.32 -65.78 -0.22 1.00 16 11 H 0.11 1.17 7.73 -51.93 -0.40 0.77 16 12 C -0.14 -0.91 6.58 -24.90 -0.16 -1.08 16 13 C 0.10 1.04 6.49 -3.07 -0.02 1.02 16 14 N -0.63 -9.16 3.33 -170.52 -0.57 -9.73 16 15 C 0.55 10.90 7.87 -10.99 -0.09 10.81 16 16 O -0.51 -12.34 16.12 5.55 0.09 -12.25 16 17 C -0.15 -3.03 5.35 36.00 0.19 -2.83 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 23 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.10 1.27 6.43 -2.53 -0.02 1.25 16 28 H 0.11 0.94 4.40 -52.49 -0.23 0.71 16 29 H 0.10 0.65 8.06 -52.49 -0.42 0.22 16 30 H 0.12 0.57 7.00 -52.48 -0.37 0.20 16 31 H 0.06 0.22 7.56 -51.93 -0.39 -0.17 16 32 H 0.07 0.26 6.43 -51.93 -0.33 -0.07 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.06 0.25 6.43 -51.93 -0.33 -0.09 16 37 H 0.06 0.28 6.62 -51.93 -0.34 -0.07 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.40 2.02 7.27 -40.82 -0.30 1.72 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.42 8.00 -51.93 -0.42 0.00 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 45 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.07 0.80 7.55 -51.93 -0.39 0.41 16 48 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -36.85 397.35 -8.42 -45.27 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.69 Total: -1.09 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 0.35 Total: -2.12 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.01 Total: -40.97 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: 0.18 Total: -19.64 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.85 -8.42 -45.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578066243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.077 kcal (2) G-P(sol) polarization free energy of solvation -36.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds