Wall clock time and date at job start Sat Apr 11 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99968 * 2 1 4 4 C 1.53003 * 109.46890 * 120.00767 * 3 2 1 5 5 C 1.53001 * 109.47121 * 240.00244 * 3 2 1 6 6 C 1.52999 * 109.47304 * 300.00136 * 5 3 2 7 7 C 1.50693 * 109.47580 * 0.02562 * 3 2 1 8 8 O 1.21281 * 120.00483 * 240.00348 * 7 3 2 9 9 N 1.34781 * 119.99960 * 59.99769 * 7 3 2 10 10 C 1.46500 * 120.00190 * 180.02562 * 9 7 3 11 11 H 1.08999 * 110.91648 * 322.55086 * 10 9 7 12 12 C 1.55154 * 111.00473 * 198.64917 * 10 9 7 13 13 C 1.54322 * 102.94204 * 206.42028 * 12 10 9 14 14 N 1.47019 * 107.27223 * 22.19795 * 13 12 10 15 15 C 1.34775 * 125.65013 * 181.03860 * 14 13 12 16 16 O 1.21285 * 120.00015 * 180.02562 * 15 14 13 17 17 C 1.50694 * 120.00038 * 0.02562 * 15 14 13 18 18 S 1.81003 * 109.47387 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00290 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99627 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00042 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99968 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99784 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47204 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47370 * 120.00108 * 23 21 19 26 26 H 1.48507 * 109.46932 * 240.00266 * 23 21 19 27 27 C 1.47426 * 108.70209 * 1.05519 * 14 13 12 28 28 H 1.07999 * 120.00154 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00290 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99457 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46833 * 299.99388 * 4 3 2 32 32 H 1.08994 * 109.47527 * 59.99990 * 4 3 2 33 33 H 1.09006 * 109.47001 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.47042 * 60.00149 * 5 3 2 35 35 H 1.08999 * 109.47358 * 179.97438 * 5 3 2 36 36 H 1.08996 * 109.47082 * 299.99989 * 6 5 3 37 37 H 1.09006 * 109.46988 * 59.99919 * 6 5 3 38 38 H 1.08996 * 109.47138 * 179.97438 * 6 5 3 39 39 H 0.97003 * 120.00036 * 0.02562 * 9 7 3 40 40 H 1.08999 * 110.71557 * 88.06123 * 12 10 9 41 41 H 1.09002 * 110.72203 * 324.78645 * 12 10 9 42 42 H 1.09001 * 109.88768 * 262.77536 * 13 12 10 43 43 H 1.09003 * 109.87844 * 141.61039 * 13 12 10 44 44 H 1.09006 * 109.47276 * 300.00339 * 17 15 14 45 45 H 1.08996 * 109.47281 * 59.99913 * 17 15 14 46 46 H 0.97004 * 119.99791 * 179.97438 * 22 21 19 47 47 H 1.08998 * 110.36718 * 94.71247 * 27 14 13 48 48 H 1.09005 * 110.36600 * 217.03808 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9432 1.3860 1.2492 5 6 2.9431 1.3862 -1.2493 6 6 3.9373 0.2232 -1.2494 7 6 1.0843 2.4505 0.0006 8 8 1.0890 3.2529 -0.9088 9 7 0.2032 2.5833 1.0118 10 6 -0.7491 3.6966 1.0122 11 1 -0.2877 4.6035 0.6215 12 6 -1.3267 3.9339 2.4326 13 6 -2.6994 4.5775 2.1444 14 7 -3.0802 4.1992 0.7758 15 6 -4.2064 4.5791 0.1403 16 8 -4.4187 4.2047 -0.9936 17 6 -5.2019 5.4692 0.8387 18 16 -6.5966 5.7985 -0.2670 19 6 -7.5750 6.8302 0.7735 20 1 -7.2349 7.0698 1.7701 21 6 -8.7829 7.3350 0.3123 22 7 -9.1977 7.0425 -0.9022 23 14 -9.8199 8.4293 1.4152 24 1 -9.1368 8.6045 2.7221 25 1 -10.0007 9.7541 0.7692 26 1 -11.1470 7.7988 1.6315 27 6 -2.0263 3.3350 0.2136 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 2.3166 1.3283 2.1392 32 1 3.6515 0.5576 1.2491 33 1 3.4886 2.3298 1.2490 34 1 2.3164 1.3285 -2.1392 35 1 3.4877 2.3303 -1.2495 36 1 4.5640 0.2809 -0.3595 37 1 3.3922 -0.7208 -1.2494 38 1 4.5636 0.2808 -2.1396 39 1 0.1996 1.9417 1.7394 40 1 -0.6919 4.6162 2.9979 41 1 -1.4473 2.9891 2.9627 42 1 -2.6239 5.6621 2.2218 43 1 -3.4397 4.2039 2.8519 44 1 -5.5625 4.9737 1.7402 45 1 -4.7217 6.4097 1.1085 46 1 -10.0421 7.3950 -1.2243 47 1 -2.2796 2.2848 0.3583 48 1 -1.8848 3.5495 -0.8457 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578066243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:46 Heat of formation + Delta-G solvation = -76.593014 kcal Electronic energy + Delta-G solvation = -27271.011619 eV Core-core repulsion = 23451.647815 eV Total energy + Delta-G solvation = -3819.363804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.87182 -40.88642 -38.71483 -37.49026 -35.58428 -34.60136 -33.09394 -32.12443 -30.89424 -30.39063 -28.92659 -27.67009 -26.27367 -24.76843 -23.04402 -22.71943 -21.90301 -20.79668 -19.99959 -19.54417 -18.19949 -17.93783 -17.49023 -17.10840 -16.89878 -16.69688 -16.56743 -15.81978 -15.58795 -15.37446 -15.24687 -14.83732 -14.57473 -14.49180 -14.38576 -14.15378 -13.89484 -13.60149 -13.43479 -13.17156 -13.12422 -12.95379 -12.92178 -12.81048 -12.66142 -12.61167 -12.54720 -12.49092 -11.89972 -11.77306 -11.73487 -11.39878 -11.17115 -11.09317 -10.82127 -10.39407 -10.29591 -10.20043 -9.75687 -8.70681 -8.35900 -6.15281 1.18790 1.28505 1.41172 1.41399 1.48342 1.52351 1.56222 1.84172 2.23747 2.26178 2.98432 3.17332 3.35487 3.47713 3.56650 3.67734 3.84913 3.92507 3.97619 4.05938 4.13681 4.20236 4.28054 4.37627 4.41533 4.46220 4.56115 4.60922 4.70092 4.72412 4.75288 4.85661 4.89962 4.99803 5.04612 5.05885 5.12057 5.17854 5.20725 5.32160 5.39982 5.40825 5.50693 5.62786 5.72610 6.18845 6.29717 6.42922 7.03655 7.05144 7.14841 8.73798 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031156 B = 0.001962 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.499909 B =14268.512945 C =14631.002730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.135 4.135 3 C -0.047 4.047 4 C -0.136 4.136 5 C -0.099 4.099 6 C -0.149 4.149 7 C 0.521 3.479 8 O -0.579 6.579 9 N -0.702 5.702 10 C 0.140 3.860 11 H 0.086 0.914 12 C -0.115 4.115 13 C 0.089 3.911 14 N -0.616 5.616 15 C 0.544 3.456 16 O -0.570 6.570 17 C -0.116 4.116 18 S -0.157 6.157 19 C -0.543 4.543 20 H 0.086 0.914 21 C 0.011 3.989 22 N -0.913 5.913 23 Si 1.002 2.998 24 H -0.254 1.254 25 H -0.275 1.275 26 H -0.273 1.273 27 C 0.096 3.904 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.147 0.853 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.421 0.579 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.271 0.729 47 H 0.077 0.923 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.866 -15.236 14.221 35.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.153 4.153 3 C -0.050 4.050 4 C -0.194 4.194 5 C -0.137 4.137 6 C -0.206 4.206 7 C 0.308 3.692 8 O -0.458 6.458 9 N -0.355 5.355 10 C 0.033 3.967 11 H 0.104 0.896 12 C -0.153 4.153 13 C -0.033 4.033 14 N -0.351 5.351 15 C 0.332 3.668 16 O -0.449 6.449 17 C -0.267 4.267 18 S 0.070 5.930 19 C -0.691 4.691 20 H 0.104 0.896 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.823 3.177 24 H -0.177 1.177 25 H -0.200 1.200 26 H -0.199 1.199 27 C -0.028 4.028 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.165 0.835 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.260 0.740 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 28.384 -15.173 11.774 34.271 hybrid contribution -0.961 0.966 1.049 1.719 sum 27.423 -14.207 12.823 33.441 Atomic orbital electron populations 1.24405 0.96678 1.03061 1.00797 1.22851 0.95297 0.97117 1.00026 1.20053 0.94561 0.90688 0.99741 1.21920 0.99565 1.03795 0.94078 1.21329 0.97155 1.00069 0.95189 1.21868 0.98528 0.97320 1.02847 1.21178 0.80972 0.86155 0.80852 1.90737 1.72131 1.45697 1.37215 1.45917 1.34156 1.29690 1.25739 1.21894 0.87138 0.90386 0.97298 0.89562 1.22939 0.93934 1.04279 0.94126 1.22432 0.97845 1.01518 0.81463 1.48311 1.19189 1.50454 1.17144 1.19918 0.81343 0.80113 0.85396 1.90699 1.76556 1.57349 1.20263 1.23280 0.98176 1.02094 1.03178 1.85686 1.18510 1.65301 1.23482 1.23223 1.08058 1.35094 1.02737 0.89634 1.26184 0.98216 0.97833 0.97112 1.70202 1.21967 1.44414 1.18324 0.84860 0.77471 0.77149 0.78172 1.17745 1.20019 1.19884 1.22594 0.87398 0.94833 0.97997 0.89244 0.86721 0.83532 0.90340 0.88795 0.92250 0.93824 0.92364 0.90546 0.91481 0.92510 0.74011 0.86121 0.86968 0.89900 0.88882 0.86933 0.87322 0.91990 0.90497 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.74 13.18 67.78 0.89 -1.85 16 2 C -0.13 -1.38 7.99 25.64 0.21 -1.17 16 3 C -0.05 -0.60 0.62 -53.68 -0.03 -0.63 16 4 C -0.14 -0.85 8.00 71.98 0.58 -0.28 16 5 C -0.10 -1.51 4.27 30.59 0.13 -1.38 16 6 C -0.15 -1.29 9.30 71.98 0.67 -0.62 16 7 C 0.52 10.15 5.34 87.65 0.47 10.61 16 8 O -0.58 -17.57 15.73 -3.03 -0.05 -17.62 16 9 N -0.70 -9.58 3.41 -435.97 -1.49 -11.07 16 10 C 0.14 2.44 3.32 46.38 0.15 2.60 16 11 H 0.09 1.91 7.73 -2.39 -0.02 1.90 16 12 C -0.11 -1.08 6.58 31.78 0.21 -0.88 16 13 C 0.09 1.51 6.49 86.73 0.56 2.08 16 14 N -0.62 -17.78 3.33 -811.80 -2.70 -20.48 16 15 C 0.54 22.13 7.87 87.66 0.69 22.82 16 16 O -0.57 -29.22 16.12 -3.04 -0.05 -29.27 16 17 C -0.12 -4.81 5.35 71.23 0.38 -4.43 16 18 S -0.16 -8.99 20.57 -56.49 -1.16 -10.15 16 19 C -0.54 -31.33 9.50 67.95 0.65 -30.69 16 20 H 0.09 4.54 7.80 -2.91 -0.02 4.52 16 21 C 0.01 0.64 5.49 84.86 0.47 1.10 16 22 N -0.91 -56.88 13.22 21.65 0.29 -56.59 16 23 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 24 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 C 0.10 2.54 6.43 86.86 0.56 3.10 16 28 H 0.09 1.51 4.40 -2.91 -0.01 1.50 16 29 H 0.11 1.24 8.06 -2.91 -0.02 1.21 16 30 H 0.15 0.83 7.00 -2.91 -0.02 0.81 16 31 H 0.08 0.24 7.56 -2.39 -0.02 0.22 16 32 H 0.09 0.27 6.43 -2.39 -0.02 0.25 16 33 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.04 0.89 8.10 -2.39 -0.02 0.87 16 35 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 36 H 0.08 0.41 6.43 -2.39 -0.02 0.39 16 37 H 0.07 0.47 6.62 -2.38 -0.02 0.45 16 38 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.42 2.89 7.27 -92.71 -0.67 2.22 16 40 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.11 0.51 8.00 -2.39 -0.02 0.49 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 45 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 46 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 47 H 0.08 1.87 7.55 -2.39 -0.02 1.86 16 48 H 0.04 1.46 8.04 -2.38 -0.02 1.44 16 Total: -1.00 -87.90 397.35 3.73 -84.18 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.28 Total: 14.80 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 6.57 Total: 0.38 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -3.90 Total: -88.14 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -0.10 Total: -46.88 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.16 Total: -10.15 kcal Total: -87.90 3.73 -84.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578066243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.583 kcal (2) G-P(sol) polarization free energy of solvation -87.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds