Wall clock time and date at job start Sat Apr 11 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47338 * 2 1 4 4 C 1.32999 * 119.99888 * 125.42967 * 3 2 1 5 5 C 1.50698 * 120.00228 * 185.66930 * 4 3 2 6 6 C 1.47100 * 119.99843 * 5.66757 * 4 3 2 7 7 O 1.21605 * 120.00512 * 255.47332 * 6 4 3 8 8 N 1.34776 * 119.99746 * 75.47584 * 6 4 3 9 9 C 1.46501 * 120.00135 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.47332 * 179.97438 * 9 8 6 11 11 H 1.09006 * 110.88564 * 302.57468 * 10 9 8 12 12 C 1.55159 * 111.00605 * 178.65235 * 10 9 8 13 13 C 1.54311 * 102.86471 * 206.23015 * 12 10 9 14 14 N 1.47024 * 107.27214 * 22.52433 * 13 12 10 15 15 C 1.34780 * 125.64325 * 180.96594 * 14 13 12 16 16 O 1.21288 * 119.99945 * 179.69006 * 15 14 13 17 17 C 1.50700 * 120.00301 * 359.69707 * 15 14 13 18 18 S 1.80998 * 109.47206 * 180.02562 * 17 15 14 19 19 C 1.76205 * 100.00008 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99754 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99867 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00368 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99833 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47150 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.46843 * 299.99470 * 23 21 19 26 26 H 1.48496 * 109.47376 * 59.99446 * 23 21 19 27 27 C 1.47415 * 108.70826 * 0.70646 * 14 13 12 28 28 H 1.09007 * 109.47179 * 59.99715 * 1 2 3 29 29 H 1.09002 * 109.47289 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47215 * 299.99849 * 1 2 3 31 31 H 1.09007 * 109.46815 * 240.00149 * 2 1 3 32 32 H 1.08997 * 109.47455 * 120.00691 * 2 1 3 33 33 H 1.08004 * 120.00520 * 305.43794 * 3 2 1 34 34 H 1.09005 * 109.46943 * 270.00596 * 5 4 3 35 35 H 1.09006 * 109.47108 * 29.99844 * 5 4 3 36 36 H 1.08992 * 109.47242 * 150.00113 * 5 4 3 37 37 H 0.97002 * 119.99999 * 359.97438 * 8 6 4 38 38 H 1.09005 * 109.46778 * 59.99977 * 9 8 6 39 39 H 1.08999 * 109.47535 * 300.00299 * 9 8 6 40 40 H 1.08999 * 110.71832 * 324.78970 * 12 10 9 41 41 H 1.09003 * 110.71878 * 88.06169 * 12 10 9 42 42 H 1.09002 * 109.98636 * 263.04862 * 13 12 10 43 43 H 1.08997 * 109.77636 * 141.88241 * 13 12 10 44 44 H 1.09004 * 109.47312 * 59.99342 * 17 15 14 45 45 H 1.09003 * 109.46889 * 299.99686 * 17 15 14 46 46 H 0.97008 * 119.99755 * 0.02562 * 22 21 19 47 47 H 1.09003 * 110.37089 * 94.93283 * 27 14 13 48 48 H 1.08999 * 110.37077 * 217.26357 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.8835 1.8251 0.9385 5 6 3.2868 3.2750 1.0159 6 6 3.4313 0.8569 1.9011 7 8 3.0153 0.8334 3.0435 8 7 4.3943 -0.0041 1.5168 9 6 4.9403 -0.9679 2.4755 10 6 6.0098 -1.8201 1.7891 11 1 5.5997 -2.3304 0.9175 12 6 6.6369 -2.8327 2.7835 13 6 8.0394 -3.0756 2.1877 14 7 8.3624 -1.9154 1.3443 15 6 9.4949 -1.7533 0.6318 16 8 9.6531 -0.7536 -0.0365 17 6 10.5646 -2.8143 0.6652 18 16 11.9495 -2.3081 -0.3845 19 6 13.0210 -3.6896 -0.1647 20 1 12.7230 -4.5077 0.4743 21 6 14.2482 -3.7259 -0.8120 22 7 14.6115 -2.7285 -1.5905 23 14 15.3844 -5.1901 -0.5785 24 1 16.6230 -4.9871 -1.3720 25 1 15.7330 -5.3217 0.8590 26 1 14.7002 -6.4257 -1.0370 27 6 7.2399 -0.9616 1.4022 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.7011 2.1107 -0.7620 34 1 4.1712 3.4395 0.4003 35 1 2.4702 3.8992 0.6528 36 1 3.5107 3.5352 2.0504 37 1 4.7260 0.0144 0.6054 38 1 4.1399 -1.6129 2.8381 39 1 5.3848 -0.4335 3.3150 40 1 6.7075 -2.3998 3.7814 41 1 6.0631 -3.7592 2.8035 42 1 8.0357 -3.9832 1.5839 43 1 8.7709 -3.1652 2.9908 44 1 10.1547 -3.7552 0.2979 45 1 10.9144 -2.9455 1.6892 46 1 14.0216 -1.9680 -1.7114 47 1 7.4262 -0.2020 2.1614 48 1 7.0866 -0.4965 0.4284 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580027089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:08 Heat of formation + Delta-G solvation = -77.987410 kcal Electronic energy + Delta-G solvation = -26498.220791 eV Core-core repulsion = 22678.796521 eV Total energy + Delta-G solvation = -3819.424270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.50541 -39.80637 -37.67465 -36.20055 -35.10794 -32.72148 -32.55492 -32.09445 -29.81214 -29.20473 -27.46117 -26.14839 -24.84394 -23.76499 -22.90649 -22.14529 -21.07469 -19.67630 -19.20317 -18.24246 -17.06751 -16.86972 -16.62910 -16.07198 -15.95873 -15.45691 -14.97403 -14.82303 -14.32219 -14.21149 -14.06124 -13.85226 -13.79566 -13.51127 -13.35840 -13.25403 -12.90399 -12.85466 -12.67462 -12.45591 -12.43123 -12.35312 -11.95991 -11.88063 -11.75754 -11.54836 -11.45527 -11.36215 -11.12461 -10.93908 -10.23877 -10.19346 -9.61615 -9.58173 -9.47954 -9.38224 -9.03965 -8.65163 -8.25558 -6.70658 -6.64667 -4.02980 1.29005 2.28523 2.73506 2.84750 2.90141 3.30503 3.35991 3.41946 3.56097 4.04843 4.14705 4.21063 4.23285 4.35687 4.42158 4.59255 4.81982 4.83399 4.84503 4.93849 4.96947 4.99356 5.01107 5.19948 5.20108 5.24234 5.26158 5.31657 5.37678 5.40613 5.44041 5.49887 5.50323 5.58617 5.62091 5.63689 5.72073 5.78310 5.82857 5.93556 5.97594 5.99034 6.13883 6.26703 7.06976 7.51097 7.81546 7.88992 8.39164 8.47420 9.24449 10.79165 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021849 B = 0.001844 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.222285 B =15184.554491 C =15592.472985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.112 4.112 4 C -0.168 4.168 5 C -0.106 4.106 6 C 0.560 3.440 7 O -0.538 6.538 8 N -0.725 5.725 9 C 0.131 3.869 10 C -0.117 4.117 11 H 0.094 0.906 12 C -0.121 4.121 13 C 0.101 3.899 14 N -0.626 5.626 15 C 0.547 3.453 16 O -0.516 6.516 17 C -0.124 4.124 18 S -0.117 6.117 19 C -0.607 4.607 20 H 0.066 0.934 21 C 0.035 3.965 22 N -0.883 5.883 23 Si 1.084 2.916 24 H -0.277 1.277 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.113 3.887 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.404 0.596 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.278 0.722 47 H 0.068 0.932 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.762 3.458 6.649 28.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.131 4.131 4 C -0.171 4.171 5 C -0.163 4.163 6 C 0.347 3.653 7 O -0.415 6.415 8 N -0.377 5.377 9 C 0.007 3.993 10 C -0.136 4.136 11 H 0.112 0.888 12 C -0.159 4.159 13 C -0.022 4.022 14 N -0.363 5.363 15 C 0.336 3.664 16 O -0.390 6.390 17 C -0.275 4.275 18 S 0.110 5.890 19 C -0.755 4.755 20 H 0.084 0.916 21 C -0.175 4.175 22 N -0.517 5.517 23 Si 0.910 3.090 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.010 4.010 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.239 0.761 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.249 4.325 6.002 27.271 hybrid contribution -1.481 -0.765 0.913 1.901 sum -27.729 3.561 6.915 28.800 Atomic orbital electron populations 1.21676 0.94344 1.02081 1.02196 1.20785 0.96929 0.93890 1.02806 1.23414 0.95887 0.97843 0.95929 1.21540 1.01777 0.96648 0.97105 1.20685 1.02099 0.90305 1.03216 1.18465 0.78854 0.80259 0.87732 1.90822 1.59749 1.71050 1.19894 1.46109 1.39931 1.36283 1.15380 1.21320 0.95582 0.90540 0.91822 1.22656 0.94569 0.96701 0.99703 0.88799 1.22623 0.94845 0.99595 0.98834 1.22020 0.96424 0.89420 0.94379 1.48459 1.17932 1.21354 1.48602 1.20015 0.80923 0.87649 0.77841 1.90712 1.77780 1.30077 1.40454 1.23291 0.98709 0.99976 1.05555 1.84822 1.13103 1.31048 1.60062 1.23690 1.07121 1.06644 1.38088 0.91609 1.26062 0.96253 1.02543 0.92667 1.70804 1.39168 1.07916 1.33831 0.83329 0.75682 0.73566 0.76429 1.20249 1.21120 1.21127 1.22198 0.84541 0.92084 1.02222 0.92349 0.92240 0.92432 0.90350 0.91419 0.85560 0.90793 0.90947 0.91182 0.76112 0.90721 0.90800 0.89916 0.89458 0.91040 0.90993 0.89025 0.89015 0.90997 0.91373 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.44 16 2 C -0.11 -0.66 6.18 -27.89 -0.17 -0.83 16 3 C -0.11 -0.71 9.20 -36.13 -0.33 -1.04 16 4 C -0.17 -1.32 5.74 -102.85 -0.59 -1.92 16 5 C -0.11 -0.70 10.03 36.00 0.36 -0.34 16 6 C 0.56 5.56 5.27 -12.67 -0.07 5.49 16 7 O -0.54 -7.43 17.11 5.27 0.09 -7.34 16 8 N -0.73 -5.56 5.36 -61.49 -0.33 -5.89 16 9 C 0.13 0.96 5.12 -4.04 -0.02 0.94 16 10 C -0.12 -0.83 3.10 -88.47 -0.27 -1.11 16 11 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 12 C -0.12 -0.80 6.42 -24.90 -0.16 -0.96 16 13 C 0.10 0.98 6.48 -3.07 -0.02 0.96 16 14 N -0.63 -8.51 3.33 -170.53 -0.57 -9.08 16 15 C 0.55 10.32 7.87 -10.98 -0.09 10.24 16 16 O -0.52 -11.71 16.12 5.55 0.09 -11.62 16 17 C -0.12 -2.53 5.35 36.01 0.19 -2.34 16 18 S -0.12 -3.14 19.60 -107.50 -2.11 -5.25 16 19 C -0.61 -17.45 9.50 30.94 0.29 -17.16 16 20 H 0.07 1.80 7.80 -52.48 -0.41 1.39 16 21 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 22 N -0.88 -27.41 13.67 55.49 0.76 -26.65 16 23 Si 1.08 24.78 29.92 -169.99 -5.09 19.69 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.11 1.21 6.08 -2.53 -0.02 1.19 16 28 H 0.06 0.27 8.14 -51.92 -0.42 -0.16 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.07 0.52 6.31 -51.93 -0.33 0.20 16 33 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 36 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 37 H 0.40 2.52 8.32 -40.82 -0.34 2.18 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 40 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 45 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 46 H 0.28 8.81 7.13 -40.82 -0.29 8.51 16 47 H 0.07 0.75 8.00 -51.93 -0.42 0.33 16 48 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 LS Contribution 411.83 15.07 6.21 6.21 Total: -1.00 -37.30 411.83 -9.74 -47.04 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.17 Total: -0.71 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -0.62 Total: -6.38 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -0.14 Total: -41.62 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.18 Total: -18.97 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.09 Total: 19.69 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.11 Total: -5.25 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -37.30 -9.74 -47.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580027089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.951 kcal (2) G-P(sol) polarization free energy of solvation -37.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds