Wall clock time and date at job start Sat Apr 11 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99725 * 2 1 4 4 C 1.53000 * 109.47293 * 125.00196 * 3 2 1 5 5 C 1.52998 * 109.47033 * 59.99979 * 4 3 2 6 6 C 1.52995 * 109.46920 * 299.99662 * 4 3 2 7 7 C 1.50706 * 109.46907 * 179.97438 * 4 3 2 8 8 O 1.21276 * 120.00126 * 359.97438 * 7 4 3 9 9 N 1.34775 * 119.99674 * 179.97438 * 7 4 3 10 10 C 1.46500 * 119.99836 * 180.02562 * 9 7 4 11 11 C 1.53000 * 109.46946 * 174.54998 * 10 9 7 12 12 N 1.46497 * 115.55406 * 324.36476 * 11 10 9 13 13 C 1.34779 * 119.99982 * 294.48797 * 12 11 10 14 14 O 1.21289 * 119.99893 * 355.47541 * 13 12 11 15 15 C 1.50702 * 120.00437 * 175.47708 * 13 12 11 16 16 S 1.80995 * 109.47030 * 179.97438 * 15 13 12 17 17 C 1.76209 * 99.99940 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99465 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00159 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00104 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99994 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47388 * 89.99982 * 21 19 17 23 23 H 1.48507 * 109.47199 * 210.00091 * 21 19 17 24 24 H 1.48496 * 109.46982 * 329.99804 * 21 19 17 25 25 C 1.53007 * 117.49904 * 110.03399 * 11 10 9 26 26 C 1.53003 * 117.49894 * 178.69361 * 11 10 9 27 27 H 1.07999 * 120.00428 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99891 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00558 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47578 * 4.99514 * 3 2 1 31 31 H 1.09009 * 109.46846 * 244.99912 * 3 2 1 32 32 H 1.09005 * 109.46960 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.46966 * 299.99920 * 5 4 3 34 34 H 1.08996 * 109.47769 * 60.00103 * 5 4 3 35 35 H 1.08999 * 109.47454 * 299.99852 * 6 4 3 36 36 H 1.09005 * 109.47108 * 60.00062 * 6 4 3 37 37 H 1.09005 * 109.46912 * 180.02562 * 6 4 3 38 38 H 0.97001 * 120.00314 * 359.97438 * 9 7 4 39 39 H 1.09000 * 109.46987 * 54.55532 * 10 9 7 40 40 H 1.09001 * 109.47121 * 294.54614 * 10 9 7 41 41 H 0.97000 * 120.00606 * 114.75513 * 12 11 10 42 42 H 1.08997 * 109.46933 * 300.00256 * 15 13 12 43 43 H 1.08998 * 109.46666 * 60.00084 * 15 13 12 44 44 H 0.97003 * 119.99958 * 180.02562 * 20 19 17 45 45 H 1.09004 * 117.49815 * 215.00175 * 25 11 10 46 46 H 1.08989 * 117.49474 * 0.02562 * 25 11 10 47 47 H 1.08990 * 117.49817 * 359.97438 * 26 11 10 48 48 H 1.09003 * 117.49981 * 144.97307 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 4.0245 0.1731 1.0558 6 6 2.2521 1.1964 2.4889 7 6 3.7888 2.6381 1.1811 8 8 3.5708 3.4641 0.3203 9 7 4.7053 2.8872 2.1374 10 6 5.4377 4.1560 2.1374 11 6 6.3085 4.2422 3.3925 12 7 5.7344 3.6475 4.6020 13 6 4.6276 4.1815 5.1554 14 8 4.1542 5.2017 4.7012 15 6 3.9781 3.5112 6.3387 16 16 2.5250 4.4624 6.8483 17 6 1.9792 3.4825 8.2073 18 1 2.5236 2.5917 8.4837 19 6 0.8503 3.8561 8.9231 20 7 0.1870 4.9422 8.5865 21 14 0.2721 2.8178 10.3642 22 1 0.9180 3.2989 11.6117 23 1 -1.2029 2.9304 10.4953 24 1 0.6413 1.3984 10.1313 25 6 7.8244 4.1451 3.2087 26 6 7.1804 5.4878 3.5632 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6212 1.4026 -0.9315 32 1 4.7170 0.1933 1.8974 33 1 3.4795 -0.7710 1.0559 34 1 4.5823 0.2705 0.1245 35 1 1.5471 2.0229 2.5785 36 1 1.7071 0.2523 2.4889 37 1 2.9442 1.2168 3.3308 38 1 4.8794 2.2267 2.8262 39 1 4.7294 4.9844 2.1290 40 1 6.0707 4.2100 1.2516 41 1 6.1530 2.8717 5.0068 42 1 3.6736 2.5018 6.0624 43 1 4.6884 3.4634 7.1640 44 1 -0.6017 5.2035 9.0870 45 1 8.3944 3.6388 3.9877 46 1 8.2012 4.0203 2.1937 47 1 7.1339 6.2456 2.7812 48 1 7.3264 5.8651 4.5754 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584963270.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:16 Heat of formation + Delta-G solvation = -40.184408 kcal Electronic energy + Delta-G solvation = -27894.597014 eV Core-core repulsion = 24076.812006 eV Total energy + Delta-G solvation = -3817.785009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.49471 -39.57756 -37.41906 -36.59944 -34.33732 -32.85266 -32.79067 -32.45900 -29.05815 -27.52694 -27.34726 -26.65807 -25.51911 -23.02713 -22.75997 -21.52501 -20.16976 -19.68997 -18.89865 -17.90042 -17.24451 -16.54896 -16.34373 -15.78848 -15.39021 -15.18992 -15.08244 -14.83589 -14.58763 -14.17499 -13.98278 -13.93088 -13.69150 -13.35479 -13.14382 -12.82399 -12.61568 -12.49281 -12.42470 -12.20650 -12.10254 -11.76229 -11.72461 -11.27154 -11.10513 -11.08209 -11.05880 -11.05147 -10.96384 -10.80544 -10.44629 -9.85139 -9.66727 -9.45930 -9.41318 -9.10701 -9.04879 -8.96154 -8.27453 -6.53760 -6.24806 -3.95834 2.15360 2.66961 2.80638 2.99355 3.13282 3.19684 3.24787 3.28118 3.51985 3.58731 4.16929 4.37760 4.47764 4.55808 4.59886 4.72264 4.77421 4.98282 5.05659 5.06186 5.10498 5.11208 5.34840 5.36750 5.40979 5.45180 5.53311 5.62452 5.66477 5.68116 5.73233 5.74800 5.79891 5.83553 5.85063 5.89925 5.92828 6.05139 6.09198 6.20956 6.34211 6.51232 6.60488 6.66261 7.47167 7.55744 7.59082 8.22780 8.31535 8.54681 9.20556 10.82499 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008095 B = 0.003716 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3458.020627 B = 7532.432345 C =10164.225530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.151 4.151 3 C -0.070 4.070 4 C -0.076 4.076 5 C -0.140 4.140 6 C -0.140 4.140 7 C 0.525 3.475 8 O -0.541 6.541 9 N -0.718 5.718 10 C 0.153 3.847 11 C 0.091 3.909 12 N -0.712 5.712 13 C 0.534 3.466 14 O -0.500 6.500 15 C -0.153 4.153 16 S -0.055 6.055 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.075 3.925 20 N -0.867 5.867 21 Si 0.917 3.083 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.171 4.171 26 C -0.161 4.161 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.399 0.601 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.400 0.600 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.102 -10.949 -14.445 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.169 4.169 3 C -0.108 4.108 4 C -0.079 4.079 5 C -0.198 4.198 6 C -0.198 4.198 7 C 0.311 3.689 8 O -0.418 6.418 9 N -0.370 5.370 10 C 0.028 3.972 11 C 0.003 3.997 12 N -0.368 5.368 13 C 0.320 3.680 14 O -0.372 6.372 15 C -0.304 4.304 16 S 0.171 5.829 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.208 4.208 26 C -0.199 4.199 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.234 0.766 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.235 0.765 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.965 -8.508 -15.787 21.558 hybrid contribution 0.497 -2.500 2.202 3.368 sum 12.461 -11.008 -13.585 21.471 Atomic orbital electron populations 1.23886 0.95991 1.01916 1.01077 1.22912 0.95962 0.98169 0.99892 1.20588 0.97505 0.95717 0.96970 1.20748 0.96000 0.92857 0.98283 1.21902 0.98295 0.97424 1.02147 1.21877 1.00357 1.03409 0.94147 1.20528 0.78983 0.88549 0.80866 1.90686 1.65432 1.48049 1.37624 1.45774 1.40973 1.19614 1.30634 1.21033 0.94682 0.87313 0.94129 1.20699 0.90061 1.02190 0.86793 1.45463 1.29782 1.34128 1.27403 1.20362 0.79299 0.84522 0.83819 1.90725 1.61915 1.22821 1.61736 1.23536 1.04745 1.04378 0.97749 1.85469 1.24319 1.34045 1.39062 1.22855 1.15411 1.13127 1.17131 0.90978 1.24978 0.95435 0.95421 0.97624 1.70015 1.17869 1.22859 1.39441 0.86187 0.77978 0.80042 0.81417 1.20266 1.20721 1.19691 1.23441 0.92682 1.01219 1.03482 1.23316 1.01399 0.91307 1.03916 0.88456 0.88596 0.87348 0.90566 0.90452 0.92278 0.91081 0.92153 0.91490 0.91093 0.92235 0.76590 0.89685 0.90911 0.76538 0.89333 0.89337 0.92144 0.88142 0.87683 0.87832 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 14.32 29.02 0.42 -1.36 16 2 C -0.15 -1.40 7.65 -36.02 -0.28 -1.67 16 3 C -0.07 -0.78 4.02 -27.88 -0.11 -0.89 16 4 C -0.08 -0.82 0.64 -155.66 -0.10 -0.92 16 5 C -0.14 -1.11 8.11 37.16 0.30 -0.81 16 6 C -0.14 -1.62 8.12 37.16 0.30 -1.32 16 7 C 0.52 7.18 6.48 -10.98 -0.07 7.11 16 8 O -0.54 -9.38 15.97 5.56 0.09 -9.29 16 9 N -0.72 -8.60 5.18 -60.29 -0.31 -8.91 16 10 C 0.15 1.91 5.42 -4.04 -0.02 1.89 16 11 C 0.09 0.98 1.97 -131.81 -0.26 0.72 16 12 N -0.71 -8.35 4.44 -47.60 -0.21 -8.56 16 13 C 0.53 9.19 7.70 -10.98 -0.08 9.11 16 14 O -0.50 -10.81 15.38 5.55 0.09 -10.72 16 15 C -0.15 -2.90 6.16 36.01 0.22 -2.68 16 16 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 17 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 18 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 21 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.17 -1.29 10.11 -26.69 -0.27 -1.56 16 26 C -0.16 -1.64 10.18 -26.69 -0.27 -1.91 16 27 H 0.10 0.94 7.84 -52.49 -0.41 0.53 16 28 H 0.10 0.76 8.06 -52.49 -0.42 0.33 16 29 H 0.11 0.83 6.80 -52.49 -0.36 0.47 16 30 H 0.08 0.98 7.75 -51.93 -0.40 0.57 16 31 H 0.08 0.87 8.10 -51.92 -0.42 0.44 16 32 H 0.06 0.41 7.57 -51.93 -0.39 0.02 16 33 H 0.07 0.48 6.53 -51.93 -0.34 0.15 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.73 7.22 -51.93 -0.37 0.35 16 37 H 0.06 0.66 7.56 -51.93 -0.39 0.27 16 38 H 0.40 4.05 6.62 -40.82 -0.27 3.78 16 39 H 0.08 1.38 7.90 -51.93 -0.41 0.97 16 40 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 41 H 0.40 3.42 8.83 -40.82 -0.36 3.06 16 42 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 43 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.10 0.66 8.06 -51.94 -0.42 0.24 16 47 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 411.37 15.07 6.20 6.20 Total: -1.00 -35.40 411.37 -8.57 -43.97 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -7.89 Total: 7.00 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -0.03 Total: -6.92 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.21 Total: -42.60 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.17 Total: -20.01 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.40 -8.57 -43.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584963270.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.783 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds