Wall clock time and date at job start Sat Apr 11 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99725 * 2 1 4 4 C 1.53000 * 109.47293 * 125.00196 * 3 2 1 5 5 C 1.52998 * 109.47033 * 59.99979 * 4 3 2 6 6 C 1.52995 * 109.46920 * 299.99662 * 4 3 2 7 7 C 1.50706 * 109.46907 * 179.97438 * 4 3 2 8 8 O 1.21276 * 120.00126 * 359.97438 * 7 4 3 9 9 N 1.34775 * 119.99674 * 179.97438 * 7 4 3 10 10 C 1.46500 * 119.99836 * 180.02562 * 9 7 4 11 11 C 1.53000 * 109.46946 * 174.54998 * 10 9 7 12 12 N 1.46497 * 115.55406 * 324.36476 * 11 10 9 13 13 C 1.34779 * 119.99982 * 294.48797 * 12 11 10 14 14 O 1.21289 * 119.99893 * 355.47541 * 13 12 11 15 15 C 1.50702 * 120.00437 * 175.47708 * 13 12 11 16 16 S 1.80995 * 109.47030 * 179.97438 * 15 13 12 17 17 C 1.76209 * 99.99940 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99465 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00159 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00104 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99994 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47388 * 89.99982 * 21 19 17 23 23 H 1.48507 * 109.47199 * 210.00091 * 21 19 17 24 24 H 1.48496 * 109.46982 * 329.99804 * 21 19 17 25 25 C 1.53007 * 117.49904 * 110.03399 * 11 10 9 26 26 C 1.53003 * 117.49894 * 178.69361 * 11 10 9 27 27 H 1.07999 * 120.00428 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99891 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00558 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47578 * 4.99514 * 3 2 1 31 31 H 1.09009 * 109.46846 * 244.99912 * 3 2 1 32 32 H 1.09005 * 109.46960 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.46966 * 299.99920 * 5 4 3 34 34 H 1.08996 * 109.47769 * 60.00103 * 5 4 3 35 35 H 1.08999 * 109.47454 * 299.99852 * 6 4 3 36 36 H 1.09005 * 109.47108 * 60.00062 * 6 4 3 37 37 H 1.09005 * 109.46912 * 180.02562 * 6 4 3 38 38 H 0.97001 * 120.00314 * 359.97438 * 9 7 4 39 39 H 1.09000 * 109.46987 * 54.55532 * 10 9 7 40 40 H 1.09001 * 109.47121 * 294.54614 * 10 9 7 41 41 H 0.97000 * 120.00606 * 114.75513 * 12 11 10 42 42 H 1.08997 * 109.46933 * 300.00256 * 15 13 12 43 43 H 1.08998 * 109.46666 * 60.00084 * 15 13 12 44 44 H 0.97003 * 119.99958 * 180.02562 * 20 19 17 45 45 H 1.09004 * 117.49815 * 215.00175 * 25 11 10 46 46 H 1.08989 * 117.49474 * 0.02562 * 25 11 10 47 47 H 1.08990 * 117.49817 * 359.97438 * 26 11 10 48 48 H 1.09003 * 117.49981 * 144.97307 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 4.0245 0.1731 1.0558 6 6 2.2521 1.1964 2.4889 7 6 3.7888 2.6381 1.1811 8 8 3.5708 3.4641 0.3203 9 7 4.7053 2.8872 2.1374 10 6 5.4377 4.1560 2.1374 11 6 6.3085 4.2422 3.3925 12 7 5.7344 3.6475 4.6020 13 6 4.6276 4.1815 5.1554 14 8 4.1542 5.2017 4.7012 15 6 3.9781 3.5112 6.3387 16 16 2.5250 4.4624 6.8483 17 6 1.9792 3.4825 8.2073 18 1 2.5236 2.5917 8.4837 19 6 0.8503 3.8561 8.9231 20 7 0.1870 4.9422 8.5865 21 14 0.2721 2.8178 10.3642 22 1 0.9180 3.2989 11.6117 23 1 -1.2029 2.9304 10.4953 24 1 0.6413 1.3984 10.1313 25 6 7.8244 4.1451 3.2087 26 6 7.1804 5.4878 3.5632 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6212 1.4026 -0.9315 32 1 4.7170 0.1933 1.8974 33 1 3.4795 -0.7710 1.0559 34 1 4.5823 0.2705 0.1245 35 1 1.5471 2.0229 2.5785 36 1 1.7071 0.2523 2.4889 37 1 2.9442 1.2168 3.3308 38 1 4.8794 2.2267 2.8262 39 1 4.7294 4.9844 2.1290 40 1 6.0707 4.2100 1.2516 41 1 6.1530 2.8717 5.0068 42 1 3.6736 2.5018 6.0624 43 1 4.6884 3.4634 7.1640 44 1 -0.6017 5.2035 9.0870 45 1 8.3944 3.6388 3.9877 46 1 8.2012 4.0203 2.1937 47 1 7.1339 6.2456 2.7812 48 1 7.3264 5.8651 4.5754 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584963270.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:15 Heat of formation + Delta-G solvation = -64.791137 kcal Electronic energy + Delta-G solvation = -27895.664042 eV Core-core repulsion = 24076.812006 eV Total energy + Delta-G solvation = -3818.852037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55992 -40.74334 -38.54842 -37.55680 -35.39936 -34.58228 -34.07381 -33.58723 -30.51659 -28.39420 -28.27023 -27.65668 -27.50483 -23.93739 -23.59976 -22.64774 -21.16937 -20.74577 -19.85613 -19.77975 -18.22465 -17.77677 -17.56690 -16.87585 -16.81679 -16.48478 -16.35850 -16.04317 -15.96455 -15.44916 -15.06794 -14.85838 -14.80645 -14.53287 -14.47397 -14.07319 -13.69758 -13.56688 -13.42847 -13.36265 -13.15601 -12.98663 -12.89594 -12.64908 -12.60426 -12.41411 -12.09866 -11.96819 -11.86534 -11.84272 -11.74034 -11.39616 -11.13972 -10.83422 -10.75042 -10.25004 -10.22245 -10.14090 -10.02818 -8.65668 -8.34202 -6.11900 1.25684 1.40241 1.42221 1.46322 1.55801 1.58260 1.62223 2.02996 2.25092 2.28502 2.73294 3.00477 3.30571 3.50956 3.57102 3.71892 3.84258 3.87305 3.87863 4.04097 4.18827 4.23666 4.31051 4.33550 4.47686 4.51160 4.58719 4.69120 4.72103 4.74193 4.76018 4.81525 4.87860 4.95561 4.99572 5.06990 5.11761 5.19803 5.24310 5.31617 5.33897 5.42190 5.55539 5.75052 5.93028 6.20022 6.46876 6.50965 7.07504 7.18548 7.28444 8.74835 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008095 B = 0.003716 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3458.020627 B = 7532.432345 C =10164.225530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C -0.070 4.070 4 C -0.069 4.069 5 C -0.136 4.136 6 C -0.137 4.137 7 C 0.515 3.485 8 O -0.587 6.587 9 N -0.707 5.707 10 C 0.157 3.843 11 C 0.067 3.933 12 N -0.683 5.683 13 C 0.537 3.463 14 O -0.552 6.552 15 C -0.129 4.129 16 S -0.152 6.152 17 C -0.543 4.543 18 H 0.084 0.916 19 C 0.014 3.986 20 N -0.913 5.913 21 Si 0.996 3.004 22 H -0.269 1.269 23 H -0.280 1.280 24 H -0.255 1.255 25 C -0.120 4.120 26 C -0.179 4.179 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.136 0.864 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.030 0.970 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.410 0.590 39 H 0.036 0.964 40 H 0.090 0.910 41 H 0.421 0.579 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.270 0.730 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.103 0.897 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.831 -14.877 -13.796 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.166 4.166 3 C -0.108 4.108 4 C -0.072 4.072 5 C -0.193 4.193 6 C -0.195 4.195 7 C 0.303 3.697 8 O -0.467 6.467 9 N -0.359 5.359 10 C 0.032 3.968 11 C -0.021 4.021 12 N -0.338 5.338 13 C 0.323 3.677 14 O -0.429 6.429 15 C -0.280 4.280 16 S 0.075 5.925 17 C -0.691 4.691 18 H 0.103 0.897 19 C -0.191 4.191 20 N -0.550 5.550 21 Si 0.818 3.182 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.179 1.179 25 C -0.158 4.158 26 C -0.217 4.217 27 H 0.101 0.899 28 H 0.133 0.867 29 H 0.154 0.846 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.247 0.753 39 H 0.054 0.946 40 H 0.108 0.892 41 H 0.260 0.740 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.079 0.921 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.121 0.879 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.764 -12.495 -15.120 24.550 hybrid contribution -0.261 -1.222 1.911 2.283 sum 14.504 -13.717 -13.210 23.937 Atomic orbital electron populations 1.24019 0.96279 1.02208 1.01057 1.22963 0.95866 0.97948 0.99820 1.20545 0.97178 0.95979 0.97090 1.20741 0.96260 0.92592 0.97589 1.21917 0.97847 0.96409 1.03097 1.21859 0.99994 1.02829 0.94796 1.21181 0.78951 0.89178 0.80404 1.90661 1.66821 1.49668 1.39546 1.45712 1.40338 1.19539 1.30309 1.20931 0.94046 0.85918 0.95947 1.20772 0.91931 1.04066 0.85290 1.45064 1.27774 1.33953 1.27056 1.20103 0.80371 0.83851 0.83328 1.90727 1.63809 1.25166 1.63153 1.23368 1.01543 1.03907 0.99190 1.85707 1.29374 1.37408 1.40037 1.23200 1.15676 1.13248 1.16994 0.89748 1.26101 0.95513 0.96650 1.00789 1.70194 1.18546 1.25067 1.41156 0.84990 0.77264 0.78711 0.77268 1.19380 1.20574 1.17893 1.23590 0.89010 0.97626 1.05526 1.23366 1.02410 0.92419 1.03535 0.89942 0.86652 0.84645 0.93688 0.90805 0.90696 0.89148 0.91731 0.95067 0.89285 0.91588 0.75295 0.94558 0.89170 0.74027 0.86998 0.87199 0.92117 0.85684 0.85372 0.87863 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.55 14.32 67.79 0.97 -2.58 16 2 C -0.15 -2.54 7.65 25.65 0.20 -2.34 16 3 C -0.07 -1.58 4.02 29.85 0.12 -1.46 16 4 C -0.07 -1.45 0.64 -52.93 -0.03 -1.48 16 5 C -0.14 -1.74 8.11 71.98 0.58 -1.16 16 6 C -0.14 -3.11 8.12 71.98 0.58 -2.53 16 7 C 0.52 14.38 6.48 87.66 0.57 14.95 16 8 O -0.59 -21.55 15.97 -3.02 -0.05 -21.60 16 9 N -0.71 -16.51 5.18 -463.06 -2.40 -18.91 16 10 C 0.16 3.90 5.42 86.38 0.47 4.36 16 11 C 0.07 1.34 1.97 3.61 0.01 1.34 16 12 N -0.68 -14.55 4.44 -422.90 -1.88 -16.43 16 13 C 0.54 18.33 7.70 87.66 0.68 19.01 16 14 O -0.55 -24.90 15.38 -3.06 -0.05 -24.94 16 15 C -0.13 -4.75 6.16 71.24 0.44 -4.32 16 16 S -0.15 -8.28 20.57 -56.49 -1.16 -9.45 16 17 C -0.54 -30.30 9.50 67.95 0.65 -29.66 16 18 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 19 C 0.01 0.79 5.49 84.86 0.47 1.26 16 20 N -0.91 -56.01 13.22 21.65 0.29 -55.73 16 21 Si 1.00 42.92 29.55 68.60 2.03 44.95 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 25 C -0.12 -1.31 10.11 30.62 0.31 -1.00 16 26 C -0.18 -3.39 10.18 30.62 0.31 -3.08 16 27 H 0.08 1.69 7.84 -2.91 -0.02 1.67 16 28 H 0.12 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.14 1.62 6.80 -2.91 -0.02 1.60 16 30 H 0.04 1.27 7.75 -2.39 -0.02 1.25 16 31 H 0.07 1.69 8.10 -2.38 -0.02 1.67 16 32 H 0.07 0.74 7.57 -2.38 -0.02 0.72 16 33 H 0.09 0.85 6.53 -2.38 -0.02 0.84 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 1.68 7.22 -2.38 -0.02 1.66 16 37 H 0.07 1.37 7.56 -2.38 -0.02 1.36 16 38 H 0.41 7.46 6.62 -92.71 -0.61 6.85 16 39 H 0.04 1.26 7.90 -2.39 -0.02 1.25 16 40 H 0.09 1.90 7.91 -2.39 -0.02 1.88 16 41 H 0.42 5.51 8.83 -92.71 -0.82 4.70 16 42 H 0.11 3.61 8.14 -2.40 -0.02 3.59 16 43 H 0.11 3.60 8.14 -2.40 -0.02 3.59 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.13 0.94 8.06 -2.39 -0.02 0.92 16 47 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -84.04 411.37 2.62 -81.43 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -0.47 Total: 29.36 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 6.31 Total: -8.68 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -3.99 Total: -91.07 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -0.10 Total: -46.54 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.45 kcal Total: -84.04 2.62 -81.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584963270.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.634 kcal (2) G-P(sol) polarization free energy of solvation -84.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds