Wall clock time and date at job start Sat Apr 11 2020 06:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99938 * 2 1 4 4 O 1.21283 * 120.00036 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99727 * 0.02562 * 3 2 1 6 6 S 1.81006 * 109.46470 * 180.02562 * 5 3 2 7 7 C 1.76202 * 99.99616 * 180.02562 * 6 5 3 8 8 H 1.07998 * 120.00117 * 0.02562 * 7 6 5 9 9 C 1.38804 * 119.99994 * 180.02562 * 7 6 5 10 10 N 1.31632 * 119.99836 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00093 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47020 * 59.99343 * 11 9 7 13 13 H 1.48496 * 109.46908 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46785 * 299.99323 * 11 9 7 15 15 C 1.46497 * 119.99952 * 180.02562 * 2 1 3 16 16 C 1.53498 * 114.20466 * 299.99711 * 15 2 1 17 17 N 1.47060 * 87.98726 * 87.71833 * 16 15 2 18 18 C 1.34784 * 136.05681 * 207.08398 * 17 16 15 19 19 O 1.21608 * 119.99747 * 0.02562 * 18 17 16 20 20 C 1.47104 * 119.99603 * 179.97438 * 18 17 16 21 21 C 1.32994 * 119.99331 * 179.97438 * 20 18 17 22 22 C 1.50708 * 119.99576 * 179.97438 * 21 20 18 23 23 C 1.52997 * 109.47141 * 0.02562 * 22 21 20 24 24 C 1.52992 * 109.47025 * 239.99988 * 22 21 20 25 25 C 1.53006 * 109.46735 * 120.00161 * 22 21 20 26 26 C 1.47060 * 87.88657 * 27.34285 * 17 16 15 27 27 H 1.09004 * 109.46442 * 269.99960 * 1 2 3 28 28 H 1.08995 * 109.47482 * 29.99421 * 1 2 3 29 29 H 1.09003 * 109.47626 * 150.00230 * 1 2 3 30 30 H 1.08994 * 109.47298 * 299.99604 * 5 3 2 31 31 H 1.08997 * 109.47102 * 60.00820 * 5 3 2 32 32 H 0.97003 * 120.00025 * 179.97438 * 10 9 7 33 33 H 1.09001 * 113.28344 * 166.93046 * 15 2 1 34 34 H 1.09002 * 113.47054 * 332.93620 * 16 15 2 35 35 H 1.09003 * 113.46563 * 202.50151 * 16 15 2 36 36 H 1.07998 * 120.00479 * 0.02562 * 20 18 17 37 37 H 1.08001 * 120.00471 * 0.02562 * 21 20 18 38 38 H 1.09002 * 109.47153 * 299.99670 * 23 22 21 39 39 H 1.09001 * 109.46832 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.47261 * 59.99842 * 23 22 21 41 41 H 1.09001 * 109.47066 * 180.02562 * 24 22 21 42 42 H 1.08996 * 109.47747 * 300.00019 * 24 22 21 43 43 H 1.09002 * 109.47103 * 60.00431 * 24 22 21 44 44 H 1.08993 * 109.46955 * 300.00223 * 25 22 21 45 45 H 1.09000 * 109.47050 * 60.00052 * 25 22 21 46 46 H 1.09001 * 109.47002 * 179.97438 * 25 22 21 47 47 H 1.09003 * 113.47242 * 87.44182 * 26 17 16 48 48 H 1.09008 * 113.47084 * 217.87713 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5616 3.8480 -0.0003 7 6 1.4415 5.2082 0.0013 8 1 0.3762 5.0305 0.0029 9 6 1.9282 6.5081 0.0006 10 7 3.2266 6.7247 -0.0008 11 14 0.7408 7.9501 0.0031 12 1 -0.1121 7.8869 1.2171 13 1 1.5069 9.2222 0.0025 14 1 -0.1164 7.8874 -1.2079 15 6 2.1975 -1.2687 -0.0006 16 6 1.9060 -2.1642 1.2115 17 7 0.7773 -2.7295 0.4571 18 6 -0.4051 -3.3001 0.7618 19 8 -0.7326 -3.4364 1.9251 20 6 -1.2999 -3.7569 -0.3127 21 6 -2.4664 -4.3204 -0.0119 22 6 -3.3835 -4.7880 -1.1127 23 6 -2.7393 -4.4993 -2.4701 24 6 -4.7185 -4.0473 -1.0133 25 6 -3.6233 -6.2926 -0.9720 26 6 1.5094 -2.4041 -0.7762 27 1 -0.3632 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 0.7584 2.5302 -0.8891 31 1 0.7591 2.5298 0.8909 32 1 3.5668 7.6331 -0.0016 33 1 3.2576 -1.1541 -0.2269 34 1 1.6007 -1.6087 2.0983 35 1 2.6958 -2.8867 1.4174 36 1 -1.0093 -3.6355 -1.3457 37 1 -2.7569 -4.4423 1.0212 38 1 -2.5682 -3.4275 -2.5705 39 1 -3.4024 -4.8379 -3.2662 40 1 -1.7883 -5.0273 -2.5406 41 1 -5.3819 -4.3857 -1.8092 42 1 -5.1772 -4.2532 -0.0463 43 1 -4.5476 -2.9754 -1.1135 44 1 -2.6722 -6.8202 -1.0427 45 1 -4.0820 -6.4985 -0.0049 46 1 -4.2869 -6.6307 -1.7679 47 1 2.1946 -3.1898 -1.0945 48 1 0.8661 -2.0528 -1.5831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585345409.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:18 Heat of formation + Delta-G solvation = -34.932833 kcal Electronic energy + Delta-G solvation = -27029.685525 eV Core-core repulsion = 23212.128242 eV Total energy + Delta-G solvation = -3817.557283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07453 -40.43924 -39.26585 -38.35584 -35.75034 -34.58373 -32.78339 -31.39862 -29.91796 -28.20962 -28.10451 -27.83860 -27.64836 -27.12859 -24.62976 -22.80543 -20.87145 -19.89162 -19.41614 -19.14890 -18.47814 -18.22476 -17.23354 -16.91964 -16.86959 -16.76922 -16.56722 -15.91739 -15.77419 -15.07207 -15.02958 -14.71222 -14.67405 -14.59065 -14.25940 -14.19708 -13.61711 -13.48523 -13.23272 -13.18786 -13.17147 -13.10194 -13.00368 -12.87300 -12.77861 -12.62450 -12.54108 -12.12349 -11.94856 -11.93786 -11.75175 -11.61562 -11.13030 -11.01351 -10.93743 -10.47692 -10.28603 -9.84327 -9.74143 -8.67029 -8.34651 -6.12671 0.35284 1.22594 1.43500 1.43700 1.48317 1.54141 1.75555 1.98105 2.26140 2.27177 2.99327 3.22796 3.26563 3.35181 3.67384 3.76671 3.85205 3.99117 4.07491 4.09540 4.21005 4.21887 4.26151 4.37319 4.42746 4.43386 4.49524 4.57023 4.61724 4.67857 4.76640 4.77978 4.78739 4.82841 4.91122 5.00409 5.03727 5.13215 5.24029 5.30862 5.41501 5.41998 5.47004 5.48942 5.55691 6.14807 6.19700 6.63843 7.05615 7.06673 7.06777 8.74130 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.002197 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.804334 B =12741.405918 C =13930.532302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.590 5.590 3 C 0.540 3.460 4 O -0.553 6.553 5 C -0.126 4.126 6 S -0.145 6.145 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.014 3.986 10 N -0.910 5.910 11 Si 0.997 3.003 12 H -0.264 1.264 13 H -0.278 1.278 14 H -0.261 1.261 15 C 0.099 3.901 16 C 0.088 3.912 17 N -0.643 5.643 18 C 0.568 3.432 19 O -0.598 6.598 20 C -0.221 4.221 21 C -0.044 4.044 22 C -0.046 4.046 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.138 4.138 26 C 0.106 3.894 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.271 0.729 33 H 0.130 0.870 34 H 0.056 0.944 35 H 0.121 0.879 36 H 0.157 0.843 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.137 0.863 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 -27.334 -7.101 31.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.323 5.323 3 C 0.328 3.672 4 O -0.431 6.431 5 C -0.277 4.277 6 S 0.083 5.917 7 C -0.695 4.695 8 H 0.099 0.901 9 C -0.191 4.191 10 N -0.546 5.546 11 Si 0.818 3.182 12 H -0.189 1.189 13 H -0.203 1.203 14 H -0.185 1.185 15 C -0.006 4.006 16 C -0.036 4.036 17 N -0.377 5.377 18 C 0.362 3.638 19 O -0.481 6.481 20 C -0.241 4.241 21 C -0.064 4.064 22 C -0.046 4.046 23 C -0.205 4.205 24 C -0.197 4.197 25 C -0.196 4.196 26 C -0.016 4.016 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.174 0.826 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.094 0.906 47 H 0.155 0.845 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.731 -27.380 -6.457 30.878 hybrid contribution -1.614 1.074 0.659 2.048 sum -14.345 -26.306 -5.798 30.519 Atomic orbital electron populations 1.21925 0.77861 1.04444 1.01986 1.47381 1.07599 1.04050 1.73283 1.20049 0.87261 0.85017 0.74877 1.90685 1.15178 1.87284 1.49919 1.23386 1.02894 0.95146 1.06274 1.85511 1.12238 0.96973 1.97021 1.23154 0.94620 0.92720 1.59034 0.90056 1.26109 0.97592 1.01629 0.93747 1.70169 1.14017 1.22547 1.47848 0.85028 0.77662 0.75999 0.79468 1.18913 1.20350 1.18510 1.22416 0.98495 0.82511 0.97153 1.23592 0.88181 0.95108 0.96724 1.49672 1.16160 1.59663 1.12183 1.18712 0.80395 0.75730 0.88946 1.90777 1.75520 1.58612 1.23201 1.22678 0.96068 1.06299 0.99026 1.23871 0.92878 0.89574 1.00043 1.19834 0.94700 0.96690 0.93391 1.22017 1.01224 1.02221 0.95038 1.21849 0.95131 1.00072 1.02658 1.21841 1.02225 0.92853 1.02632 1.23692 0.94219 0.95140 0.88594 0.93648 0.89808 0.89028 0.87067 0.88165 0.91964 0.85268 0.92507 0.86142 0.82576 0.87609 0.91902 0.91075 0.91682 0.90627 0.92576 0.92644 0.92466 0.92583 0.90628 0.84544 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.67 9.35 127.77 1.19 2.86 16 2 N -0.59 -15.13 3.12 -821.38 -2.56 -17.69 16 3 C 0.54 19.52 7.69 87.66 0.67 20.20 16 4 O -0.55 -24.32 15.37 -3.04 -0.05 -24.36 16 5 C -0.13 -4.99 4.71 71.24 0.34 -4.65 16 6 S -0.14 -7.95 20.57 -56.49 -1.16 -9.11 16 7 C -0.55 -31.10 9.50 67.96 0.65 -30.45 16 8 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 9 C 0.01 0.80 5.49 84.86 0.47 1.27 16 10 N -0.91 -55.52 13.22 21.65 0.29 -55.23 16 11 Si 1.00 43.41 29.55 68.60 2.03 45.43 16 12 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 13 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 15 C 0.10 1.94 4.68 45.55 0.21 2.16 16 16 C 0.09 1.72 8.24 83.17 0.69 2.41 16 17 N -0.64 -11.74 2.41 -862.22 -2.08 -13.82 16 18 C 0.57 12.77 7.61 86.57 0.66 13.43 16 19 O -0.60 -19.22 16.99 -4.06 -0.07 -19.29 16 20 C -0.22 -3.34 8.83 23.43 0.21 -3.13 16 21 C -0.04 -0.64 8.33 24.52 0.20 -0.44 16 22 C -0.05 -0.44 0.99 -52.93 -0.05 -0.49 16 23 C -0.15 -1.03 7.13 71.98 0.51 -0.51 16 24 C -0.14 -1.27 8.46 71.98 0.61 -0.66 16 25 C -0.14 -1.13 8.46 71.98 0.61 -0.52 16 26 C 0.11 1.22 7.37 83.26 0.61 1.84 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.65 6.44 -2.39 -0.02 1.63 16 29 H 0.09 1.49 5.39 -2.39 -0.01 1.48 16 30 H 0.11 3.92 7.40 -2.40 -0.02 3.90 16 31 H 0.10 3.75 8.11 -2.40 -0.02 3.73 16 32 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.13 2.69 7.29 -2.39 -0.02 2.67 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.16 1.49 5.67 -2.91 -0.02 1.47 16 37 H 0.11 2.00 7.49 -2.91 -0.02 1.98 16 38 H 0.06 0.44 7.50 -2.39 -0.02 0.42 16 39 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.06 0.40 7.50 -2.38 -0.02 0.39 16 41 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.10 0.90 7.29 -2.38 -0.02 0.89 16 Total: -1.00 -81.42 405.15 4.91 -76.51 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.94 Total: 14.26 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 7.58 Total: 3.30 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -4.35 Total: -86.74 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.12 Total: -43.66 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -81.42 4.91 -76.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585345409.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.580 kcal (2) G-P(sol) polarization free energy of solvation -81.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds