Wall clock time and date at job start Sat Apr 11 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.47230 * 2 1 4 4 C 1.32995 * 120.00122 * 122.93093 * 3 2 1 5 5 C 1.50698 * 119.99804 * 175.34596 * 4 3 2 6 6 C 1.47101 * 120.00116 * 355.33947 * 4 3 2 7 7 O 1.21617 * 120.00082 * 262.88554 * 6 4 3 8 8 N 1.34777 * 119.99523 * 82.87584 * 6 4 3 9 9 C 1.47016 * 125.65177 * 354.82696 * 8 6 4 10 10 C 1.54425 * 107.28256 * 181.02112 * 9 8 6 11 11 C 1.55157 * 102.89320 * 22.18984 * 10 9 8 12 12 C 1.53004 * 111.00457 * 206.40350 * 11 10 9 13 13 N 1.46506 * 111.00355 * 82.59136 * 11 10 9 14 14 C 1.34773 * 119.99920 * 183.17704 * 13 11 10 15 15 O 1.21283 * 120.00255 * 0.02562 * 14 13 11 16 16 C 1.50702 * 120.00001 * 180.02562 * 14 13 11 17 17 S 1.80997 * 109.47143 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99926 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00171 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99982 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99854 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00149 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46911 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46978 * 119.99978 * 22 20 18 25 25 H 1.48499 * 109.47466 * 240.00324 * 22 20 18 26 26 C 1.47428 * 125.64204 * 174.78781 * 8 6 4 27 27 H 1.09000 * 109.46843 * 60.00118 * 1 2 3 28 28 H 1.09001 * 109.46836 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46876 * 299.99840 * 1 2 3 30 30 H 1.08998 * 109.46876 * 240.00160 * 2 1 3 31 31 H 1.09000 * 109.46843 * 119.99882 * 2 1 3 32 32 H 1.08005 * 119.99892 * 302.92946 * 3 2 1 33 33 H 1.09004 * 109.46957 * 275.02450 * 5 4 3 34 34 H 1.08992 * 109.47522 * 35.03532 * 5 4 3 35 35 H 1.09008 * 109.46821 * 155.03045 * 5 4 3 36 36 H 1.08995 * 109.88667 * 300.44521 * 9 8 6 37 37 H 1.09006 * 109.87671 * 61.60590 * 9 8 6 38 38 H 1.09004 * 110.72797 * 263.85092 * 10 9 8 39 39 H 1.09001 * 110.76349 * 140.54195 * 10 9 8 40 40 H 1.09002 * 109.47023 * 296.81800 * 12 11 10 41 41 H 1.08996 * 109.47028 * 56.82340 * 12 11 10 42 42 H 1.08997 * 109.46836 * 176.81888 * 12 11 10 43 43 H 0.96995 * 119.99719 * 3.18067 * 13 11 10 44 44 H 1.09001 * 109.46838 * 300.00015 * 16 14 13 45 45 H 1.08999 * 109.46947 * 59.99956 * 16 14 13 46 46 H 0.97002 * 120.00004 * 179.97438 * 21 20 18 47 47 H 1.08997 * 110.37486 * 37.07037 * 26 8 6 48 48 H 1.08998 * 110.45882 * 274.79184 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8444 1.8390 0.9667 5 6 3.4304 3.2263 0.9109 6 6 3.1704 0.9475 2.0905 7 8 2.5589 1.0405 3.1376 8 7 4.1467 0.0276 1.9595 9 6 4.8882 -0.2650 0.7242 10 6 5.8825 -1.4023 1.0445 11 6 5.2513 -2.0725 2.2934 12 6 6.3204 -2.7568 3.1478 13 7 4.2046 -3.0220 1.9072 14 6 3.4910 -3.6607 2.8555 15 8 3.7150 -3.4491 4.0285 16 6 2.4147 -4.6379 2.4583 17 16 1.6436 -5.3235 3.9454 18 6 0.4606 -6.4010 3.2076 19 1 0.3917 -6.4720 2.1322 20 6 -0.3827 -7.1585 4.0086 21 7 -0.2990 -7.0715 5.3194 22 14 -1.6373 -8.3003 3.2265 23 1 -1.5300 -8.2150 1.7478 24 1 -1.3756 -9.6958 3.6617 25 1 -3.0032 -7.8981 3.6481 26 6 4.6483 -0.8513 3.0315 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.7330 2.0994 -0.7851 33 1 4.3332 3.2150 0.3001 34 1 2.7037 3.9103 0.4728 35 1 3.6783 3.5568 1.9196 36 1 4.1975 -0.5852 -0.0558 37 1 5.4319 0.6222 0.3994 38 1 6.8674 -0.9988 1.2796 39 1 5.9416 -2.1086 0.2163 40 1 6.7839 -3.5601 2.5750 41 1 7.0796 -2.0282 3.4320 42 1 5.8591 -3.1696 4.0449 43 1 4.0253 -3.1910 0.9691 44 1 1.6603 -4.1248 1.8619 45 1 2.8547 -5.4445 1.8719 46 1 -0.8886 -7.6007 5.8792 47 1 3.8296 -1.1656 3.6788 48 1 5.4168 -0.3423 3.6132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585796827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:30 Heat of formation + Delta-G solvation = -62.953508 kcal Electronic energy + Delta-G solvation = -28330.266076 eV Core-core repulsion = 24511.493725 eV Total energy + Delta-G solvation = -3818.772351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81072 -39.34706 -37.50704 -35.93533 -34.12185 -32.43693 -32.41672 -31.69084 -29.99313 -28.56487 -27.42429 -26.75108 -25.47419 -24.03890 -22.66921 -21.64001 -21.29049 -19.51050 -18.57863 -17.77564 -16.82632 -16.57625 -16.25747 -16.00610 -15.31420 -15.15833 -14.83435 -14.79262 -14.19847 -13.90523 -13.79735 -13.71519 -13.43323 -13.28238 -13.18983 -12.95045 -12.73566 -12.65008 -12.61542 -12.42966 -12.30866 -12.21146 -11.86717 -11.64323 -11.53043 -11.24887 -11.13581 -11.06726 -11.03495 -10.94066 -10.74941 -9.93842 -9.79785 -9.27970 -9.22456 -9.07760 -9.02897 -8.67936 -8.21650 -6.48078 -6.20691 -3.90793 1.54410 2.51549 2.87763 2.98741 3.06935 3.22038 3.27945 3.32245 3.67263 4.02278 4.21097 4.22541 4.42376 4.54727 4.64675 4.83937 4.88973 5.08904 5.10549 5.12886 5.14541 5.19428 5.22803 5.25991 5.30889 5.37263 5.44220 5.52551 5.56378 5.58756 5.62792 5.72361 5.77037 5.77602 5.87891 5.90970 5.96171 6.03661 6.12435 6.13114 6.20265 6.31099 6.34380 6.66184 7.35624 7.60533 7.68065 8.05680 8.36160 8.60166 9.24711 10.86744 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.003222 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.079624 B = 8688.652905 C =10024.810770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.109 4.109 4 C -0.165 4.165 5 C -0.102 4.102 6 C 0.573 3.427 7 O -0.527 6.527 8 N -0.613 5.613 9 C 0.102 3.898 10 C -0.133 4.133 11 C 0.167 3.833 12 C -0.156 4.156 13 N -0.726 5.726 14 C 0.536 3.464 15 O -0.509 6.509 16 C -0.153 4.153 17 S -0.057 6.057 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.096 3.904 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.397 0.603 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.268 0.732 47 H 0.098 0.902 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.407 17.042 -16.454 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.128 4.128 4 C -0.168 4.168 5 C -0.159 4.159 6 C 0.362 3.638 7 O -0.403 6.403 8 N -0.347 5.347 9 C -0.021 4.021 10 C -0.171 4.171 11 C 0.079 3.921 12 C -0.215 4.215 13 N -0.381 5.381 14 C 0.322 3.678 15 O -0.383 6.383 16 C -0.304 4.304 17 S 0.170 5.830 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.744 3.256 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.027 4.027 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.142 0.858 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.231 0.769 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.116 0.884 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.311 17.455 -13.722 25.887 hybrid contribution -1.176 -1.045 -2.429 2.895 sum 12.134 16.410 -16.151 26.027 Atomic orbital electron populations 1.21680 0.94254 1.02504 1.01990 1.20820 0.97240 0.93605 1.02794 1.23375 0.95473 0.97513 0.96450 1.21477 1.02515 0.97402 0.95434 1.20634 1.00654 0.91679 1.02895 1.18129 0.78287 0.79429 0.87941 1.90879 1.49861 1.70129 1.29408 1.48490 1.36707 1.37605 1.11946 1.22042 0.94255 0.98231 0.87605 1.23009 0.99030 0.97064 0.97995 1.21269 0.88057 0.88292 0.94438 1.22050 0.97045 1.00719 1.01646 1.45953 1.37743 1.44725 1.09636 1.20271 0.81502 0.80347 0.85650 1.90675 1.66661 1.63158 1.17824 1.23529 0.99203 1.00156 1.07497 1.85420 1.42499 1.52323 1.02788 1.22899 1.21939 1.28361 0.95138 0.90961 1.24990 0.97130 0.96718 0.94755 1.70027 1.37581 1.39395 1.03199 0.86129 0.80362 0.79879 0.79188 1.19643 1.20573 1.20556 1.22715 1.00445 0.88984 0.90542 0.92617 0.91922 0.92323 0.90461 0.91141 0.85751 0.91056 0.90992 0.91574 0.91250 0.91167 0.88840 0.89184 0.91947 0.91728 0.89454 0.76866 0.89491 0.89329 0.92239 0.88372 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.90 37.16 0.37 -1.17 16 2 C -0.11 -1.09 5.48 -27.88 -0.15 -1.24 16 3 C -0.11 -0.99 9.22 -36.13 -0.33 -1.32 16 4 C -0.17 -1.73 4.93 -102.85 -0.51 -2.24 16 5 C -0.10 -0.78 10.02 36.00 0.36 -0.42 16 6 C 0.57 8.12 5.33 -12.66 -0.07 8.05 16 7 O -0.53 -10.18 17.34 5.26 0.09 -10.09 16 8 N -0.61 -7.22 3.13 -171.85 -0.54 -7.76 16 9 C 0.10 0.77 6.47 -3.01 -0.02 0.75 16 10 C -0.13 -0.87 5.99 -24.84 -0.15 -1.02 16 11 C 0.17 1.80 0.82 -129.66 -0.11 1.69 16 12 C -0.16 -1.70 8.57 37.16 0.32 -1.38 16 13 N -0.73 -9.08 5.18 -45.62 -0.24 -9.31 16 14 C 0.54 9.65 7.22 -10.99 -0.08 9.57 16 15 O -0.51 -11.03 12.67 5.55 0.07 -10.96 16 16 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 17 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 18 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 22 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.10 1.28 5.83 -2.53 -0.01 1.27 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.92 6.14 -51.93 -0.32 0.60 16 32 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 35 H 0.07 0.58 8.08 -51.92 -0.42 0.16 16 36 H 0.07 0.48 7.39 -51.93 -0.38 0.09 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.48 8.04 -51.93 -0.42 0.06 16 39 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 42 H 0.09 1.28 6.23 -51.93 -0.32 0.96 16 43 H 0.40 3.84 8.50 -40.82 -0.35 3.49 16 44 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 45 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.10 1.79 6.43 -51.93 -0.33 1.45 16 48 H 0.08 0.91 8.03 -51.93 -0.42 0.50 16 LS Contribution 404.50 15.07 6.10 6.10 Total: -1.00 -37.05 404.50 -8.97 -46.02 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.99 Total: 2.17 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 0.04 Total: -3.32 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.04 Total: -42.69 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.16 Total: -21.04 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.05 -8.97 -46.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585796827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.931 kcal (2) G-P(sol) polarization free energy of solvation -37.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds