Wall clock time and date at job start Sat Apr 11 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50700 * 109.47008 * 2 1 4 4 C 1.32998 * 120.00244 * 126.98035 * 3 2 1 5 5 C 1.50706 * 119.99639 * 9.34410 * 4 3 2 6 6 C 1.47097 * 120.00210 * 189.34277 * 4 3 2 7 7 O 1.21610 * 120.00053 * 6.56370 * 6 4 3 8 8 N 1.34773 * 119.99875 * 186.56283 * 6 4 3 9 9 C 1.47029 * 125.64943 * 5.24413 * 8 6 4 10 10 C 1.54322 * 107.27035 * 181.02213 * 9 8 6 11 11 C 1.55158 * 102.94515 * 22.18958 * 10 9 8 12 12 C 1.53002 * 111.00664 * 206.42208 * 11 10 9 13 13 N 1.46503 * 111.00243 * 82.61038 * 11 10 9 14 14 C 1.34772 * 120.00288 * 180.02562 * 13 11 10 15 15 O 1.21280 * 119.99707 * 0.02562 * 14 13 11 16 16 C 1.50701 * 120.00412 * 179.97438 * 14 13 11 17 17 S 1.80996 * 109.47232 * 180.02562 * 16 14 13 18 18 C 1.76204 * 99.99983 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00315 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99417 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00345 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47414 * 89.99982 * 22 20 18 24 24 H 1.48496 * 109.46960 * 210.00231 * 22 20 18 25 25 H 1.48502 * 109.46904 * 330.00294 * 22 20 18 26 26 C 1.47426 * 125.64937 * 184.93492 * 8 6 4 27 27 H 1.08999 * 109.47190 * 300.00106 * 1 2 3 28 28 H 1.09003 * 109.47414 * 60.00028 * 1 2 3 29 29 H 1.09000 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47190 * 239.99894 * 2 1 3 31 31 H 1.09003 * 109.47414 * 119.99972 * 2 1 3 32 32 H 1.07993 * 120.00169 * 306.97484 * 3 2 1 33 33 H 1.09002 * 109.47241 * 3.65653 * 5 4 3 34 34 H 1.09000 * 109.47048 * 123.66151 * 5 4 3 35 35 H 1.09000 * 109.46965 * 243.66242 * 5 4 3 36 36 H 1.08990 * 109.88096 * 300.43902 * 9 8 6 37 37 H 1.08995 * 109.88393 * 61.60625 * 9 8 6 38 38 H 1.08995 * 110.72235 * 140.55935 * 10 9 8 39 39 H 1.09000 * 110.72148 * 263.82764 * 10 9 8 40 40 H 1.09000 * 109.46802 * 60.00468 * 12 11 10 41 41 H 1.08998 * 109.46774 * 180.02562 * 12 11 10 42 42 H 1.08999 * 109.47221 * 300.00409 * 12 11 10 43 43 H 0.97003 * 119.99522 * 0.02562 * 13 11 10 44 44 H 1.09000 * 109.47004 * 300.00370 * 16 14 13 45 45 H 1.09007 * 109.46741 * 60.00042 * 16 14 13 46 46 H 0.97001 * 119.99373 * 179.97438 * 21 20 18 47 47 H 1.09001 * 110.36732 * 274.74957 * 26 8 6 48 48 H 1.09004 * 110.36673 * 37.06740 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9071 1.8169 0.9201 5 6 3.5558 0.8042 1.8283 6 6 3.2416 3.2433 1.0512 7 8 2.6329 4.0727 0.4028 8 7 4.2226 3.6311 1.8901 9 6 5.1068 2.7334 2.6477 10 6 6.0495 3.6206 3.4877 11 6 5.2700 4.9583 3.5882 12 6 6.2258 6.1364 3.7873 13 7 4.2743 4.9065 4.6615 14 6 3.4923 5.9763 4.9076 15 8 3.6127 6.9817 4.2401 16 6 2.4676 5.9228 6.0113 17 16 1.5836 7.5002 6.0908 18 6 0.4828 7.1671 7.4258 19 1 0.5067 6.2063 7.9184 20 6 -0.4141 8.1398 7.8450 21 7 -0.4427 9.3110 7.2449 22 14 -1.5805 7.7869 9.2607 23 1 -0.9388 8.1803 10.5407 24 1 -2.8327 8.5634 9.0757 25 1 -1.8974 6.3364 9.2912 26 6 4.5910 5.0256 2.1951 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6819 2.1174 -0.7472 33 1 3.2369 -0.1979 1.5417 34 1 4.6397 0.8795 1.7409 35 1 3.2600 0.9986 2.8592 36 1 4.5141 2.0967 3.3043 37 1 5.6896 2.1202 1.9604 38 1 6.2051 3.1896 4.4767 39 1 7.0006 3.7660 2.9754 40 1 6.9119 6.1944 2.9423 41 1 5.6531 7.0614 3.8549 42 1 6.7932 5.9926 4.7068 43 1 4.1778 4.1022 5.1951 44 1 1.7590 5.1192 5.8106 45 1 2.9673 5.7375 6.9623 46 1 -1.0698 9.9907 7.5376 47 1 5.2884 5.4057 1.4485 48 1 3.7004 5.6527 2.2374 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585796828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:34 Heat of formation + Delta-G solvation = -46.813357 kcal Electronic energy + Delta-G solvation = -27687.322916 eV Core-core repulsion = 23869.250455 eV Total energy + Delta-G solvation = -3818.072462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.82452 -39.34243 -37.55904 -36.36754 -34.32236 -32.41924 -32.31675 -31.48594 -30.06302 -28.56459 -27.52036 -26.76574 -25.47299 -24.47099 -23.17201 -21.28876 -20.56107 -19.48833 -18.67040 -17.85623 -16.94355 -16.60021 -16.25621 -16.11696 -15.70101 -14.95031 -14.79684 -14.64202 -14.51512 -14.12505 -13.99632 -13.81620 -13.49731 -13.37702 -13.25754 -12.88352 -12.68672 -12.62245 -12.52063 -12.44613 -12.35586 -11.98489 -11.86356 -11.64630 -11.55587 -11.31349 -11.07983 -11.04099 -11.00206 -10.80237 -10.74639 -9.92888 -9.80608 -9.31606 -9.24013 -9.06962 -9.01682 -8.60716 -8.22304 -6.48222 -6.20502 -3.90795 1.18141 2.83671 2.98519 3.06157 3.12866 3.22896 3.27945 3.31892 3.67626 4.03155 4.19126 4.21387 4.41928 4.57681 4.61192 4.71831 4.83862 4.87783 4.96270 5.07083 5.12711 5.14567 5.16499 5.20422 5.30556 5.37878 5.39641 5.52617 5.55864 5.57575 5.59333 5.64778 5.68129 5.73823 5.77678 5.86955 5.88353 5.96358 6.04326 6.13526 6.25763 6.31444 6.37205 6.67466 7.39316 7.60381 7.68838 8.09597 8.36121 8.60313 9.24746 10.86927 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010245 B = 0.002913 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.289022 B = 9609.942149 C =11399.806860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.071 4.071 4 C -0.184 4.184 5 C -0.134 4.134 6 C 0.568 3.432 7 O -0.537 6.537 8 N -0.612 5.612 9 C 0.092 3.908 10 C -0.137 4.137 11 C 0.167 3.833 12 C -0.159 4.159 13 N -0.725 5.725 14 C 0.536 3.464 15 O -0.510 6.510 16 C -0.153 4.153 17 S -0.057 6.057 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.100 3.900 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.398 0.602 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.075 0.925 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.878 -22.111 -10.517 28.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.091 4.091 4 C -0.187 4.187 5 C -0.189 4.189 6 C 0.358 3.642 7 O -0.415 6.415 8 N -0.346 5.346 9 C -0.031 4.031 10 C -0.175 4.175 11 C 0.079 3.921 12 C -0.217 4.217 13 N -0.380 5.380 14 C 0.322 3.678 15 O -0.384 6.384 16 C -0.304 4.304 17 S 0.169 5.831 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.023 4.023 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.143 0.857 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.080 0.920 43 H 0.232 0.768 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.604 -19.820 -12.041 26.887 hybrid contribution -0.921 -1.764 1.988 2.813 sum 12.683 -21.585 -10.053 26.978 Atomic orbital electron populations 1.21706 0.94262 1.01975 1.02682 1.20920 0.96769 0.93597 1.03210 1.23573 0.92458 0.97516 0.95558 1.21320 1.02666 0.93102 1.01629 1.21462 1.00973 0.97701 0.98811 1.18088 0.78557 0.88807 0.78728 1.90827 1.51547 1.54156 1.44959 1.48268 1.33660 1.07865 1.44780 1.22608 0.92206 0.93398 0.94850 1.23064 0.98710 0.94477 1.01273 1.21306 0.88408 0.95612 0.86749 1.22087 0.98440 0.99437 1.01754 1.45938 1.38484 1.17350 1.36218 1.20277 0.80726 0.82445 0.84322 1.90662 1.67774 1.31082 1.48845 1.23535 0.99908 1.08140 0.98832 1.85406 1.42275 1.09670 1.45712 1.22861 1.22862 1.03133 1.19544 0.90998 1.24991 0.96888 0.94467 0.97251 1.70021 1.35929 1.04344 1.39943 0.86169 0.79657 0.78442 0.81242 1.20280 1.20740 1.19715 1.22737 1.01644 0.83050 0.94890 0.92227 0.92288 0.92155 0.90388 0.90140 0.85692 0.90773 0.90244 0.91111 0.90272 0.90751 0.89146 0.88896 0.91758 0.89032 0.92017 0.76833 0.89445 0.89291 0.92184 0.90661 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.15 0.37 -0.67 16 2 C -0.11 -0.74 6.04 -27.89 -0.17 -0.90 16 3 C -0.07 -0.70 9.04 -36.13 -0.33 -1.03 16 4 C -0.18 -1.94 5.97 -102.84 -0.61 -2.55 16 5 C -0.13 -0.89 7.84 36.01 0.28 -0.61 16 6 C 0.57 8.13 7.77 -12.67 -0.10 8.04 16 7 O -0.54 -10.14 16.57 5.27 0.09 -10.05 16 8 N -0.61 -7.35 3.32 -171.77 -0.57 -7.92 16 9 C 0.09 0.68 5.05 -3.06 -0.02 0.66 16 10 C -0.14 -0.91 5.97 -24.90 -0.15 -1.06 16 11 C 0.17 1.84 0.82 -129.55 -0.11 1.73 16 12 C -0.16 -1.79 8.59 37.16 0.32 -1.47 16 13 N -0.73 -9.25 5.19 -45.51 -0.24 -9.49 16 14 C 0.54 9.76 7.23 -10.99 -0.08 9.68 16 15 O -0.51 -11.10 12.70 5.56 0.07 -11.03 16 16 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 17 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 18 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 22 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 26 C 0.10 1.36 5.83 -2.41 -0.01 1.34 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.47 5.35 -51.93 -0.28 0.19 16 32 H 0.13 1.41 7.57 -52.49 -0.40 1.01 16 33 H 0.07 0.39 5.30 -51.93 -0.28 0.12 16 34 H 0.08 0.42 5.21 -51.93 -0.27 0.15 16 35 H 0.07 0.47 6.77 -51.93 -0.35 0.12 16 36 H 0.08 0.49 5.62 -51.93 -0.29 0.20 16 37 H 0.07 0.42 6.59 -51.93 -0.34 0.07 16 38 H 0.09 0.44 8.09 -51.93 -0.42 0.02 16 39 H 0.09 0.50 8.04 -51.93 -0.42 0.08 16 40 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 41 H 0.09 1.39 5.92 -51.93 -0.31 1.08 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.40 3.92 8.51 -40.82 -0.35 3.57 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 46 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.08 0.94 7.99 -51.93 -0.41 0.53 16 48 H 0.09 1.72 6.83 -51.93 -0.35 1.36 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -37.25 392.62 -8.81 -46.06 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.39 Total: 2.22 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.18 Total: -2.82 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.07 Total: -43.09 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.16 Total: -21.08 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.25 -8.81 -46.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585796828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.754 kcal (2) G-P(sol) polarization free energy of solvation -37.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds