Wall clock time and date at job start Sat Apr 11 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50700 * 109.47008 * 2 1 4 4 C 1.32998 * 120.00244 * 126.98035 * 3 2 1 5 5 C 1.50706 * 119.99639 * 9.34410 * 4 3 2 6 6 C 1.47097 * 120.00210 * 189.34277 * 4 3 2 7 7 O 1.21610 * 120.00053 * 6.56370 * 6 4 3 8 8 N 1.34773 * 119.99875 * 186.56283 * 6 4 3 9 9 C 1.47029 * 125.64943 * 5.24413 * 8 6 4 10 10 C 1.54322 * 107.27035 * 181.02213 * 9 8 6 11 11 C 1.55158 * 102.94515 * 22.18958 * 10 9 8 12 12 C 1.53002 * 111.00664 * 206.42208 * 11 10 9 13 13 N 1.46503 * 111.00243 * 82.61038 * 11 10 9 14 14 C 1.34772 * 120.00288 * 180.02562 * 13 11 10 15 15 O 1.21280 * 119.99707 * 0.02562 * 14 13 11 16 16 C 1.50701 * 120.00412 * 179.97438 * 14 13 11 17 17 S 1.80996 * 109.47232 * 180.02562 * 16 14 13 18 18 C 1.76204 * 99.99983 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00315 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99417 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00345 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47414 * 89.99982 * 22 20 18 24 24 H 1.48496 * 109.46960 * 210.00231 * 22 20 18 25 25 H 1.48502 * 109.46904 * 330.00294 * 22 20 18 26 26 C 1.47426 * 125.64937 * 184.93492 * 8 6 4 27 27 H 1.08999 * 109.47190 * 300.00106 * 1 2 3 28 28 H 1.09003 * 109.47414 * 60.00028 * 1 2 3 29 29 H 1.09000 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47190 * 239.99894 * 2 1 3 31 31 H 1.09003 * 109.47414 * 119.99972 * 2 1 3 32 32 H 1.07993 * 120.00169 * 306.97484 * 3 2 1 33 33 H 1.09002 * 109.47241 * 3.65653 * 5 4 3 34 34 H 1.09000 * 109.47048 * 123.66151 * 5 4 3 35 35 H 1.09000 * 109.46965 * 243.66242 * 5 4 3 36 36 H 1.08990 * 109.88096 * 300.43902 * 9 8 6 37 37 H 1.08995 * 109.88393 * 61.60625 * 9 8 6 38 38 H 1.08995 * 110.72235 * 140.55935 * 10 9 8 39 39 H 1.09000 * 110.72148 * 263.82764 * 10 9 8 40 40 H 1.09000 * 109.46802 * 60.00468 * 12 11 10 41 41 H 1.08998 * 109.46774 * 180.02562 * 12 11 10 42 42 H 1.08999 * 109.47221 * 300.00409 * 12 11 10 43 43 H 0.97003 * 119.99522 * 0.02562 * 13 11 10 44 44 H 1.09000 * 109.47004 * 300.00370 * 16 14 13 45 45 H 1.09007 * 109.46741 * 60.00042 * 16 14 13 46 46 H 0.97001 * 119.99373 * 179.97438 * 21 20 18 47 47 H 1.09001 * 110.36732 * 274.74957 * 26 8 6 48 48 H 1.09004 * 110.36673 * 37.06740 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9071 1.8169 0.9201 5 6 3.5558 0.8042 1.8283 6 6 3.2416 3.2433 1.0512 7 8 2.6329 4.0727 0.4028 8 7 4.2226 3.6311 1.8901 9 6 5.1068 2.7334 2.6477 10 6 6.0495 3.6206 3.4877 11 6 5.2700 4.9583 3.5882 12 6 6.2258 6.1364 3.7873 13 7 4.2743 4.9065 4.6615 14 6 3.4923 5.9763 4.9076 15 8 3.6127 6.9817 4.2401 16 6 2.4676 5.9228 6.0113 17 16 1.5836 7.5002 6.0908 18 6 0.4828 7.1671 7.4258 19 1 0.5067 6.2063 7.9184 20 6 -0.4141 8.1398 7.8450 21 7 -0.4427 9.3110 7.2449 22 14 -1.5805 7.7869 9.2607 23 1 -0.9388 8.1803 10.5407 24 1 -2.8327 8.5634 9.0757 25 1 -1.8974 6.3364 9.2912 26 6 4.5910 5.0256 2.1951 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6819 2.1174 -0.7472 33 1 3.2369 -0.1979 1.5417 34 1 4.6397 0.8795 1.7409 35 1 3.2600 0.9986 2.8592 36 1 4.5141 2.0967 3.3043 37 1 5.6896 2.1202 1.9604 38 1 6.2051 3.1896 4.4767 39 1 7.0006 3.7660 2.9754 40 1 6.9119 6.1944 2.9423 41 1 5.6531 7.0614 3.8549 42 1 6.7932 5.9926 4.7068 43 1 4.1778 4.1022 5.1951 44 1 1.7590 5.1192 5.8106 45 1 2.9673 5.7375 6.9623 46 1 -1.0698 9.9907 7.5376 47 1 5.2884 5.4057 1.4485 48 1 3.7004 5.6527 2.2374 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585796828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:33 Heat of formation + Delta-G solvation = -73.895764 kcal Electronic energy + Delta-G solvation = -27688.497298 eV Core-core repulsion = 23869.250455 eV Total energy + Delta-G solvation = -3819.246843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.84342 -40.56875 -38.69739 -37.15628 -35.44424 -34.60565 -33.28979 -32.37688 -30.90409 -30.00087 -28.22239 -27.68268 -27.64120 -25.23490 -23.89366 -22.46377 -21.38344 -20.67210 -19.88819 -19.44185 -18.00794 -17.69355 -17.49103 -17.05543 -16.90256 -16.72626 -16.37345 -15.97015 -15.28617 -15.11401 -14.92493 -14.81796 -14.78179 -14.51550 -14.19902 -14.09531 -13.83956 -13.64150 -13.42002 -13.28617 -13.18782 -13.11153 -13.00787 -12.89560 -12.79113 -12.63236 -12.32922 -12.24691 -12.09085 -11.79613 -11.73802 -11.49570 -11.16053 -10.93341 -10.69289 -10.29514 -10.27175 -10.09313 -9.51035 -8.68915 -8.36601 -6.14967 0.32628 1.24691 1.40917 1.45026 1.55480 1.60701 1.91168 2.14253 2.22901 2.26833 2.97493 3.20937 3.31033 3.48311 3.62648 3.90108 3.94333 3.95021 4.11823 4.22637 4.25689 4.29485 4.32185 4.39937 4.45331 4.52570 4.56768 4.64339 4.69582 4.78971 4.80414 4.84527 4.86426 4.98173 5.02730 5.04545 5.11287 5.14121 5.21290 5.32878 5.37288 5.39124 5.55953 5.57539 5.63171 6.17464 6.45238 6.53838 7.04363 7.05559 7.26734 8.72742 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010245 B = 0.002913 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.289022 B = 9609.942149 C =11399.806860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.074 4.074 4 C -0.193 4.193 5 C -0.129 4.129 6 C 0.550 3.450 7 O -0.605 6.605 8 N -0.608 5.608 9 C 0.081 3.919 10 C -0.119 4.119 11 C 0.165 3.835 12 C -0.156 4.156 13 N -0.699 5.699 14 C 0.534 3.466 15 O -0.553 6.553 16 C -0.129 4.129 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.011 3.989 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.258 1.258 26 C 0.097 3.903 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.417 0.583 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.271 0.729 47 H 0.080 0.920 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.880 -26.951 -8.611 32.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.136 4.136 3 C -0.094 4.094 4 C -0.196 4.196 5 C -0.184 4.184 6 C 0.343 3.657 7 O -0.488 6.488 8 N -0.340 5.340 9 C -0.039 4.039 10 C -0.156 4.156 11 C 0.078 3.922 12 C -0.214 4.214 13 N -0.354 5.354 14 C 0.320 3.680 15 O -0.431 6.431 16 C -0.280 4.280 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.182 1.182 26 C -0.027 4.027 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.255 0.745 44 H 0.118 0.882 45 H 0.131 0.869 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.673 -24.743 -10.100 30.982 hybrid contribution -1.465 -0.267 1.272 1.959 sum 14.208 -25.010 -8.827 30.088 Atomic orbital electron populations 1.21734 0.94664 1.02902 1.01557 1.20963 0.96252 0.91399 1.05024 1.23754 0.92010 0.98951 0.94716 1.21466 1.03445 0.91602 1.03046 1.21540 1.01863 0.97089 0.97897 1.18945 0.78329 0.90200 0.78262 1.90783 1.54053 1.56190 1.47822 1.48389 1.33456 1.07990 1.44171 1.23073 0.92128 0.93197 0.95515 1.23146 0.98533 0.90638 1.03320 1.21492 0.87868 0.98711 0.84170 1.22039 0.98312 0.97307 1.03730 1.45667 1.37269 1.16268 1.36205 1.20017 0.81078 0.83281 0.83610 1.90672 1.69043 1.33203 1.50153 1.23369 1.00069 1.03487 1.01079 1.85620 1.44244 1.16196 1.46573 1.23198 1.23032 1.03706 1.19437 0.89915 1.26170 0.98784 0.94019 1.00346 1.70198 1.37057 1.05642 1.41984 0.84929 0.76787 0.78924 0.77191 1.19015 1.20396 1.18159 1.22637 0.99381 0.83571 0.97136 0.93803 0.93084 0.90124 0.88475 0.88172 0.88600 0.88752 0.88162 0.90540 0.88196 0.87723 0.85768 0.86402 0.89457 0.93658 0.90154 0.74543 0.88222 0.86863 0.92012 0.90232 0.94698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.89 71.98 0.71 -1.24 16 2 C -0.10 -1.14 6.04 29.85 0.18 -0.96 16 3 C -0.07 -1.46 9.04 24.52 0.22 -1.23 16 4 C -0.19 -3.86 5.97 -18.70 -0.11 -3.98 16 5 C -0.13 -1.19 7.84 71.24 0.56 -0.63 16 6 C 0.55 16.29 7.77 86.57 0.67 16.96 16 7 O -0.61 -25.10 16.57 -4.06 -0.07 -25.16 16 8 N -0.61 -14.14 3.32 -815.63 -2.71 -16.85 16 9 C 0.08 0.83 5.05 86.73 0.44 1.27 16 10 C -0.12 -0.97 5.97 31.78 0.19 -0.78 16 11 C 0.16 3.33 0.82 5.07 0.00 3.34 16 12 C -0.16 -3.34 8.59 71.98 0.62 -2.72 16 13 N -0.70 -16.73 5.19 -416.30 -2.16 -18.89 16 14 C 0.53 19.83 7.23 87.66 0.63 20.47 16 15 O -0.55 -25.75 12.70 -3.03 -0.04 -25.78 16 16 C -0.13 -5.21 6.16 71.24 0.44 -4.78 16 17 S -0.15 -8.77 20.57 -56.49 -1.16 -9.93 16 18 C -0.55 -31.82 9.50 67.95 0.65 -31.18 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.66 5.49 84.86 0.47 1.13 16 21 N -0.91 -57.36 13.22 21.65 0.29 -57.08 16 22 Si 1.00 44.32 29.55 68.60 2.03 46.35 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 26 C 0.10 2.71 5.83 86.93 0.51 3.22 16 27 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 0.78 5.35 -2.39 -0.01 0.76 16 32 H 0.10 2.40 7.57 -2.91 -0.02 2.38 16 33 H 0.09 0.52 5.30 -2.39 -0.01 0.51 16 34 H 0.10 0.51 5.21 -2.39 -0.01 0.49 16 35 H 0.08 0.66 6.77 -2.39 -0.02 0.64 16 36 H 0.10 0.69 5.62 -2.39 -0.01 0.67 16 37 H 0.10 0.56 6.59 -2.39 -0.02 0.54 16 38 H 0.12 0.32 8.09 -2.39 -0.02 0.30 16 39 H 0.12 0.52 8.04 -2.39 -0.02 0.51 16 40 H 0.09 1.44 8.07 -2.39 -0.02 1.42 16 41 H 0.04 1.43 5.92 -2.39 -0.01 1.42 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.42 6.72 8.51 -92.71 -0.79 5.93 16 44 H 0.10 3.78 8.14 -2.40 -0.02 3.76 16 45 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 46 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 47 H 0.08 2.09 7.99 -2.39 -0.02 2.07 16 48 H 0.03 1.40 6.83 -2.38 -0.02 1.38 16 Total: -1.00 -92.34 392.62 2.54 -89.80 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.19 Total: 18.65 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 6.18 Total: -1.11 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -4.59 Total: -92.81 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.11 Total: -50.95 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -92.34 2.54 -89.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585796828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.901 kcal (2) G-P(sol) polarization free energy of solvation -92.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds