Wall clock time and date at job start Sat Apr 11 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47049 * 2 1 4 4 C 1.50701 * 115.55132 * 302.70801 * 3 2 1 5 5 O 1.21286 * 119.99809 * 112.78845 * 4 3 2 6 6 N 1.34773 * 120.00020 * 292.79097 * 4 3 2 7 7 C 1.46930 * 120.63000 * 354.43298 * 6 4 3 8 8 C 1.53188 * 108.77588 * 126.66890 * 7 6 4 9 9 C 1.53045 * 109.31228 * 54.63514 * 8 7 6 10 10 C 1.53040 * 109.53776 * 298.63894 * 9 8 7 11 11 H 1.09008 * 109.52187 * 301.39153 * 10 9 8 12 12 N 1.46500 * 109.49643 * 181.31903 * 10 9 8 13 13 C 1.34772 * 120.00630 * 85.15730 * 12 10 9 14 14 O 1.21280 * 119.99533 * 0.02562 * 13 12 10 15 15 C 1.50693 * 120.00158 * 180.02562 * 13 12 10 16 16 S 1.81003 * 109.46948 * 180.02562 * 15 13 12 17 17 C 1.76203 * 99.99919 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00008 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00132 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99519 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99914 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47342 * 60.00231 * 21 19 17 23 23 H 1.48506 * 109.46753 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47329 * 299.99752 * 21 19 17 25 25 C 1.46920 * 120.63337 * 174.72146 * 6 4 3 26 26 C 1.53003 * 117.49713 * 88.37674 * 3 2 1 27 27 C 1.53002 * 117.49893 * 157.03466 * 3 2 1 28 28 H 1.09001 * 109.46887 * 184.05592 * 1 2 3 29 29 H 1.08989 * 109.47197 * 304.05925 * 1 2 3 30 30 H 1.09005 * 109.46739 * 64.06153 * 1 2 3 31 31 H 1.09000 * 109.47708 * 240.00214 * 2 1 3 32 32 H 1.09001 * 109.47000 * 119.99763 * 2 1 3 33 33 H 1.08997 * 109.58959 * 246.46296 * 7 6 4 34 34 H 1.09005 * 109.58327 * 6.88247 * 7 6 4 35 35 H 1.09000 * 109.49563 * 294.68493 * 8 7 6 36 36 H 1.08994 * 109.49835 * 174.58679 * 8 7 6 37 37 H 1.08994 * 109.45904 * 178.61381 * 9 8 7 38 38 H 1.08996 * 109.44223 * 58.64728 * 9 8 7 39 39 H 0.97005 * 119.99701 * 265.15920 * 12 10 9 40 40 H 1.08997 * 109.47568 * 299.99889 * 15 13 12 41 41 H 1.09001 * 109.47298 * 60.00145 * 15 13 12 42 42 H 0.96998 * 119.99664 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.58715 * 353.11210 * 25 6 4 44 44 H 1.09001 * 109.58928 * 113.53831 * 25 6 4 45 45 H 1.09001 * 117.49967 * 215.00657 * 26 3 2 46 46 H 1.09003 * 117.49744 * 0.02562 * 26 3 2 47 47 H 1.08997 * 117.50113 * 359.97438 * 27 3 2 48 48 H 1.08997 * 117.49839 * 144.97639 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5640 2.3003 -1.1440 5 8 0.8159 3.2314 -0.9334 6 7 1.9695 2.0325 -2.4011 7 6 2.9687 0.9866 -2.6586 8 6 2.4075 0.0144 -3.7010 9 6 1.9816 0.7969 -4.9454 10 6 0.8814 1.7929 -4.5720 11 1 0.0324 1.2560 -4.1486 12 7 0.4524 2.5193 -5.7697 13 6 -0.4857 1.9894 -6.5794 14 8 -0.9751 0.9114 -6.3162 15 6 -0.9265 2.7364 -7.8117 16 16 -2.1869 1.7727 -8.6828 17 6 -2.5106 2.8484 -10.0403 18 1 -1.9791 3.7845 -10.1261 19 6 -3.4488 2.4926 -10.9995 20 7 -4.0963 1.3513 -10.8951 21 14 -3.7924 3.6333 -12.4382 22 1 -2.5443 3.8387 -13.2161 23 1 -4.8279 3.0278 -13.3136 24 1 -4.2787 4.9405 -11.9283 25 6 1.4254 2.7852 -3.5395 26 6 2.2392 2.1214 1.3566 27 6 3.4536 1.6921 0.5295 28 1 -0.3633 -1.0251 0.0727 29 1 -0.3633 0.5755 0.8513 30 1 -0.3633 0.4495 -0.9242 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8839 1.4410 -3.0381 34 1 3.1813 0.4490 -1.7345 35 1 1.5446 -0.5061 -3.2855 36 1 3.1746 -0.7109 -3.9721 37 1 1.6047 0.1046 -5.6982 38 1 2.8397 1.3368 -5.3457 39 1 0.8436 3.3816 -5.9801 40 1 -1.3430 3.7012 -7.5223 41 1 -0.0701 2.8925 -8.4678 42 1 -4.7521 1.1028 -11.5651 43 1 0.6195 3.4344 -3.1968 44 1 2.2146 3.3864 -3.9909 45 1 2.0259 3.1883 1.4217 46 1 2.0073 1.5401 2.2491 47 1 4.0201 0.8287 0.8783 48 1 4.0394 2.4763 0.0502 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649500940.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:06 Heat of formation + Delta-G solvation = -57.176123 kcal Electronic energy + Delta-G solvation = -27578.779488 eV Core-core repulsion = 23760.257663 eV Total energy + Delta-G solvation = -3818.521825 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.03181 -39.47778 -37.87941 -37.01466 -34.51966 -32.53390 -32.42839 -32.32999 -30.75688 -28.49951 -26.32396 -25.49082 -24.68799 -23.25717 -22.96487 -22.51927 -20.75067 -20.39376 -18.80157 -17.87851 -17.09524 -16.61096 -16.32788 -16.23040 -15.62434 -15.14979 -14.98339 -14.80377 -14.59503 -14.50144 -14.23512 -13.97105 -13.85651 -13.57792 -13.21417 -13.07548 -12.96054 -12.70891 -12.51752 -12.07076 -12.05211 -11.88874 -11.71837 -11.58230 -11.29870 -11.15562 -11.07195 -11.04429 -11.02559 -10.79877 -10.76964 -10.44903 -9.97373 -9.82730 -9.42541 -9.12767 -9.05437 -8.82497 -8.24578 -6.50262 -6.21592 -3.92264 2.23561 2.48278 3.05367 3.07707 3.23572 3.23817 3.28104 3.32990 3.71778 4.00358 4.17221 4.20535 4.36076 4.45466 4.50119 4.60876 4.63880 4.68772 4.93319 4.96151 5.04655 5.09619 5.13504 5.14225 5.17064 5.18183 5.27726 5.37896 5.43281 5.45774 5.52269 5.60806 5.62101 5.67294 5.69877 5.72166 5.77750 5.88222 5.96900 6.02287 6.09287 6.11155 6.14306 6.60888 7.04382 7.59287 7.66567 7.86942 8.35048 8.58425 9.23597 10.85787 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026653 B = 0.002038 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.301078 B =13735.028560 C =13759.146631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 C -0.157 4.157 4 C 0.556 3.444 5 O -0.534 6.534 6 N -0.603 5.603 7 C 0.103 3.897 8 C -0.133 4.133 9 C -0.132 4.132 10 C 0.136 3.864 11 H 0.091 0.909 12 N -0.734 5.734 13 C 0.535 3.465 14 O -0.515 6.515 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.106 3.894 26 C -0.143 4.143 27 C -0.163 4.163 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.398 0.602 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.733 -0.925 22.827 30.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.120 4.120 3 C -0.160 4.160 4 C 0.344 3.656 5 O -0.409 6.409 6 N -0.337 5.337 7 C -0.020 4.020 8 C -0.172 4.172 9 C -0.170 4.170 10 C 0.030 3.970 11 H 0.109 0.891 12 N -0.388 5.388 13 C 0.321 3.679 14 O -0.389 6.389 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.017 4.017 26 C -0.180 4.180 27 C -0.200 4.200 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 18.346 -2.350 23.296 29.746 hybrid contribution 0.578 2.363 -1.511 2.863 sum 18.924 0.013 21.785 28.857 Atomic orbital electron populations 1.21738 0.94710 1.01970 1.02603 1.21157 0.96824 0.91158 1.02846 1.21474 1.01697 0.97498 0.95303 1.19539 0.79806 0.83632 0.82651 1.90712 1.36134 1.30272 1.83826 1.47885 1.42555 1.37582 1.05664 1.21936 0.90715 0.89011 1.00303 1.21917 1.01868 0.97909 0.95529 1.21947 0.98384 0.98656 0.98059 1.21143 0.97725 0.92897 0.85285 0.89071 1.45950 1.43206 1.23969 1.25678 1.20313 0.77816 0.85951 0.83797 1.90701 1.54351 1.21124 1.72683 1.23533 1.05436 1.04046 0.97386 1.85392 1.44822 1.27062 1.26028 1.22826 1.27676 1.07499 1.10428 0.90969 1.24995 0.94945 0.95689 0.97969 1.70007 1.24299 1.20977 1.35007 0.86220 0.78151 0.80222 0.80885 1.19942 1.20814 1.19930 1.21776 0.99772 0.93947 0.86198 1.23029 1.00269 1.01863 0.92863 1.23141 0.89736 1.03829 1.03273 0.92116 0.92249 0.92627 0.90746 0.90778 0.91140 0.88863 0.90979 0.90140 0.90423 0.91567 0.76782 0.89160 0.89179 0.92127 0.88356 0.90967 0.87906 0.87811 0.87675 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.62 37.16 0.36 -0.93 16 2 C -0.08 -0.54 5.53 -26.73 -0.15 -0.69 16 3 C -0.16 -1.21 0.83 -155.66 -0.13 -1.34 16 4 C 0.56 6.09 6.06 -10.99 -0.07 6.03 16 5 O -0.53 -7.98 16.18 5.55 0.09 -7.89 16 6 N -0.60 -5.62 2.97 -172.77 -0.51 -6.13 16 7 C 0.10 0.67 5.78 -3.71 -0.02 0.65 16 8 C -0.13 -1.00 6.08 -26.61 -0.16 -1.16 16 9 C -0.13 -1.33 5.46 -26.69 -0.15 -1.47 16 10 C 0.14 1.60 2.61 -67.81 -0.18 1.42 16 11 H 0.09 1.34 7.58 -51.92 -0.39 0.95 16 12 N -0.73 -9.58 5.08 -53.69 -0.27 -9.86 16 13 C 0.54 9.82 7.81 -10.99 -0.09 9.74 16 14 O -0.51 -11.51 15.52 5.56 0.09 -11.42 16 15 C -0.15 -3.07 6.16 36.00 0.22 -2.84 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 21 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.11 1.07 5.89 -3.72 -0.02 1.05 16 26 C -0.14 -1.00 9.76 -26.69 -0.26 -1.26 16 27 C -0.16 -0.89 9.28 -26.69 -0.25 -1.14 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.59 7.64 -51.93 -0.40 0.20 16 31 H 0.07 0.44 6.25 -51.93 -0.32 0.12 16 32 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.48 4.35 -51.93 -0.23 0.26 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.40 4.00 8.61 -40.82 -0.35 3.65 16 40 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.10 1.19 7.04 -51.93 -0.37 0.82 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.86 8.03 -51.93 -0.42 0.44 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 399.83 15.07 6.03 6.03 Total: -1.00 -36.09 399.83 -9.71 -45.80 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.94 Total: 1.31 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.69 Total: -4.95 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.05 Total: -41.47 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.18 Total: -19.31 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.09 -9.71 -45.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649500940.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.379 kcal (2) G-P(sol) polarization free energy of solvation -36.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds