Wall clock time and date at job start Sat Apr 11 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47049 * 2 1 4 4 C 1.50701 * 115.55132 * 302.70801 * 3 2 1 5 5 O 1.21286 * 119.99809 * 112.78845 * 4 3 2 6 6 N 1.34773 * 120.00020 * 292.79097 * 4 3 2 7 7 C 1.46930 * 120.63000 * 354.43298 * 6 4 3 8 8 C 1.53188 * 108.77588 * 126.66890 * 7 6 4 9 9 C 1.53045 * 109.31228 * 54.63514 * 8 7 6 10 10 C 1.53040 * 109.53776 * 298.63894 * 9 8 7 11 11 H 1.09008 * 109.52187 * 301.39153 * 10 9 8 12 12 N 1.46500 * 109.49643 * 181.31903 * 10 9 8 13 13 C 1.34772 * 120.00630 * 85.15730 * 12 10 9 14 14 O 1.21280 * 119.99533 * 0.02562 * 13 12 10 15 15 C 1.50693 * 120.00158 * 180.02562 * 13 12 10 16 16 S 1.81003 * 109.46948 * 180.02562 * 15 13 12 17 17 C 1.76203 * 99.99919 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00008 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00132 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99519 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99914 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47342 * 60.00231 * 21 19 17 23 23 H 1.48506 * 109.46753 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47329 * 299.99752 * 21 19 17 25 25 C 1.46920 * 120.63337 * 174.72146 * 6 4 3 26 26 C 1.53003 * 117.49713 * 88.37674 * 3 2 1 27 27 C 1.53002 * 117.49893 * 157.03466 * 3 2 1 28 28 H 1.09001 * 109.46887 * 184.05592 * 1 2 3 29 29 H 1.08989 * 109.47197 * 304.05925 * 1 2 3 30 30 H 1.09005 * 109.46739 * 64.06153 * 1 2 3 31 31 H 1.09000 * 109.47708 * 240.00214 * 2 1 3 32 32 H 1.09001 * 109.47000 * 119.99763 * 2 1 3 33 33 H 1.08997 * 109.58959 * 246.46296 * 7 6 4 34 34 H 1.09005 * 109.58327 * 6.88247 * 7 6 4 35 35 H 1.09000 * 109.49563 * 294.68493 * 8 7 6 36 36 H 1.08994 * 109.49835 * 174.58679 * 8 7 6 37 37 H 1.08994 * 109.45904 * 178.61381 * 9 8 7 38 38 H 1.08996 * 109.44223 * 58.64728 * 9 8 7 39 39 H 0.97005 * 119.99701 * 265.15920 * 12 10 9 40 40 H 1.08997 * 109.47568 * 299.99889 * 15 13 12 41 41 H 1.09001 * 109.47298 * 60.00145 * 15 13 12 42 42 H 0.96998 * 119.99664 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.58715 * 353.11210 * 25 6 4 44 44 H 1.09001 * 109.58928 * 113.53831 * 25 6 4 45 45 H 1.09001 * 117.49967 * 215.00657 * 26 3 2 46 46 H 1.09003 * 117.49744 * 0.02562 * 26 3 2 47 47 H 1.08997 * 117.50113 * 359.97438 * 27 3 2 48 48 H 1.08997 * 117.49839 * 144.97639 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5640 2.3003 -1.1440 5 8 0.8159 3.2314 -0.9334 6 7 1.9695 2.0325 -2.4011 7 6 2.9687 0.9866 -2.6586 8 6 2.4075 0.0144 -3.7010 9 6 1.9816 0.7969 -4.9454 10 6 0.8814 1.7929 -4.5720 11 1 0.0324 1.2560 -4.1486 12 7 0.4524 2.5193 -5.7697 13 6 -0.4857 1.9894 -6.5794 14 8 -0.9751 0.9114 -6.3162 15 6 -0.9265 2.7364 -7.8117 16 16 -2.1869 1.7727 -8.6828 17 6 -2.5106 2.8484 -10.0403 18 1 -1.9791 3.7845 -10.1261 19 6 -3.4488 2.4926 -10.9995 20 7 -4.0963 1.3513 -10.8951 21 14 -3.7924 3.6333 -12.4382 22 1 -2.5443 3.8387 -13.2161 23 1 -4.8279 3.0278 -13.3136 24 1 -4.2787 4.9405 -11.9283 25 6 1.4254 2.7852 -3.5395 26 6 2.2392 2.1214 1.3566 27 6 3.4536 1.6921 0.5295 28 1 -0.3633 -1.0251 0.0727 29 1 -0.3633 0.5755 0.8513 30 1 -0.3633 0.4495 -0.9242 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8839 1.4410 -3.0381 34 1 3.1813 0.4490 -1.7345 35 1 1.5446 -0.5061 -3.2855 36 1 3.1746 -0.7109 -3.9721 37 1 1.6047 0.1046 -5.6982 38 1 2.8397 1.3368 -5.3457 39 1 0.8436 3.3816 -5.9801 40 1 -1.3430 3.7012 -7.5223 41 1 -0.0701 2.8925 -8.4678 42 1 -4.7521 1.1028 -11.5651 43 1 0.6195 3.4344 -3.1968 44 1 2.2146 3.3864 -3.9909 45 1 2.0259 3.1883 1.4217 46 1 2.0073 1.5401 2.2491 47 1 4.0201 0.8287 0.8783 48 1 4.0394 2.4763 0.0502 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649500940.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:06 Heat of formation + Delta-G solvation = -81.727084 kcal Electronic energy + Delta-G solvation = -27579.844097 eV Core-core repulsion = 23760.257663 eV Total energy + Delta-G solvation = -3819.586434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.82531 -40.75015 -38.78601 -37.81214 -35.68269 -34.59518 -33.39389 -32.91356 -31.94152 -29.84359 -27.67469 -27.08367 -25.37859 -24.08079 -23.52704 -23.15223 -21.81878 -21.52680 -19.89115 -19.50100 -17.95335 -17.89521 -17.31551 -17.19217 -16.88863 -16.52799 -16.44068 -15.91693 -15.60001 -15.42518 -15.30647 -15.02792 -14.72898 -14.62271 -14.50506 -14.23424 -13.89714 -13.65417 -13.59233 -13.32295 -13.18340 -12.87716 -12.66354 -12.64143 -12.50311 -12.39770 -12.29811 -12.07143 -11.98698 -11.85419 -11.75612 -11.36041 -11.13927 -11.06541 -10.94919 -10.70081 -10.29913 -10.24274 -9.73065 -8.68369 -8.35617 -6.14011 1.22155 1.40037 1.43195 1.47880 1.55083 1.56974 1.79016 2.26197 2.35501 2.71830 2.98390 3.30009 3.37437 3.58262 3.65010 3.78001 3.87063 3.91116 3.91760 4.00316 4.02414 4.19262 4.28240 4.33778 4.44323 4.48593 4.50101 4.53224 4.60219 4.67224 4.74624 4.76777 4.82047 4.95485 5.00320 5.03272 5.04325 5.12896 5.16214 5.21436 5.22564 5.31928 5.36571 5.40556 5.52536 6.18578 6.29741 6.44936 7.05425 7.06685 7.19918 8.73378 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026653 B = 0.002038 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.301078 B =13735.028560 C =13759.146631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.076 4.076 3 C -0.171 4.171 4 C 0.548 3.452 5 O -0.587 6.587 6 N -0.602 5.602 7 C 0.103 3.897 8 C -0.128 4.128 9 C -0.127 4.127 10 C 0.139 3.861 11 H 0.053 0.947 12 N -0.709 5.709 13 C 0.537 3.463 14 O -0.563 6.563 15 C -0.129 4.129 16 S -0.152 6.152 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.260 1.260 23 H -0.279 1.279 24 H -0.263 1.263 25 C 0.113 3.887 26 C -0.154 4.154 27 C -0.133 4.133 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.021 0.979 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.055 0.945 36 H 0.107 0.893 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.417 0.583 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.271 0.729 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.080 0.920 46 H 0.121 0.879 47 H 0.136 0.864 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.291 -0.200 23.338 32.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.114 4.114 3 C -0.174 4.174 4 C 0.338 3.662 5 O -0.467 6.467 6 N -0.334 5.334 7 C -0.018 4.018 8 C -0.167 4.167 9 C -0.165 4.165 10 C 0.033 3.967 11 H 0.072 0.928 12 N -0.363 5.363 13 C 0.323 3.677 14 O -0.440 6.440 15 C -0.280 4.280 16 S 0.076 5.924 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.011 4.011 26 C -0.192 4.192 27 C -0.170 4.170 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.132 0.868 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.255 0.745 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.121 0.879 45 H 0.099 0.901 46 H 0.139 0.861 47 H 0.154 0.846 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 21.975 -1.608 23.823 32.451 hybrid contribution -0.488 2.152 -1.568 2.707 sum 21.488 0.544 22.256 30.941 Atomic orbital electron populations 1.21739 0.96816 1.02069 1.00463 1.21179 0.94874 0.90689 1.04616 1.21463 1.04157 0.97434 0.94324 1.20212 0.78940 0.83293 0.83784 1.90680 1.38504 1.32756 1.84710 1.48024 1.42558 1.37836 1.04948 1.22188 0.90443 0.88205 1.01011 1.21910 1.02095 0.98249 0.94428 1.21901 0.98081 0.97862 0.98705 1.21194 0.97204 0.93528 0.84791 0.92849 1.45670 1.41299 1.24439 1.24875 1.20064 0.78469 0.85259 0.83901 1.90692 1.56376 1.23185 1.73776 1.23366 1.03710 1.03267 0.97658 1.85583 1.48596 1.30409 1.27852 1.23172 1.28018 1.07731 1.10552 0.89865 1.26148 0.94481 0.97400 1.01212 1.70179 1.25095 1.23194 1.36293 0.84995 0.78418 0.77841 0.76690 1.18494 1.20395 1.18770 1.21641 1.00018 0.93360 0.86066 1.23088 1.01919 1.00880 0.93283 1.23278 0.88411 1.04494 1.00812 0.91059 0.93007 0.95953 0.89805 0.87997 0.88540 0.86830 0.92632 0.87439 0.93519 0.89143 0.74522 0.87390 0.86838 0.91987 0.90881 0.87943 0.90149 0.86114 0.84587 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.62 71.98 0.69 -1.93 16 2 C -0.08 -0.84 5.53 30.60 0.17 -0.67 16 3 C -0.17 -2.36 0.83 -52.92 -0.04 -2.40 16 4 C 0.55 11.91 6.06 87.66 0.53 12.45 16 5 O -0.59 -18.47 16.18 -3.05 -0.05 -18.52 16 6 N -0.60 -10.48 2.97 -818.91 -2.43 -12.92 16 7 C 0.10 1.00 5.78 86.36 0.50 1.50 16 8 C -0.13 -1.65 6.08 30.67 0.19 -1.47 16 9 C -0.13 -2.40 5.46 30.62 0.17 -2.24 16 10 C 0.14 3.27 2.61 45.07 0.12 3.39 16 11 H 0.05 1.69 7.58 -2.38 -0.02 1.68 16 12 N -0.71 -18.14 5.08 -442.17 -2.25 -20.39 16 13 C 0.54 20.05 7.81 87.66 0.68 20.74 16 14 O -0.56 -26.43 15.52 -3.03 -0.05 -26.48 16 15 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16 16 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 17 C -0.55 -31.44 9.50 67.96 0.65 -30.79 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 19 C 0.01 0.71 5.49 84.86 0.47 1.17 16 20 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 21 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 25 C 0.11 2.20 5.89 86.36 0.51 2.71 16 26 C -0.15 -1.93 9.76 30.62 0.30 -1.63 16 27 C -0.13 -0.99 9.28 30.62 0.28 -0.71 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.02 0.51 7.64 -2.38 -0.02 0.49 16 31 H 0.08 0.76 6.25 -2.39 -0.01 0.75 16 32 H 0.10 0.61 8.11 -2.39 -0.02 0.60 16 33 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.11 0.70 4.35 -2.38 -0.01 0.69 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.42 7.56 8.61 -92.70 -0.80 6.76 16 40 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 41 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 42 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.07 1.83 7.04 -2.38 -0.02 1.82 16 44 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.08 1.37 8.03 -2.39 -0.02 1.35 16 46 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 48 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -85.28 399.83 2.18 -83.10 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.16 Total: 19.71 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 5.65 Total: -4.57 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -4.39 Total: -89.45 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -0.10 Total: -45.00 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -85.28 2.18 -83.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649500940.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.371 kcal (2) G-P(sol) polarization free energy of solvation -85.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds