Wall clock time and date at job start Sat Apr 11 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47506 * 2 1 4 4 C 1.50709 * 112.84500 * 302.26074 * 3 2 1 5 5 O 1.21273 * 119.99720 * 118.55294 * 4 3 2 6 6 N 1.34771 * 119.99844 * 298.55563 * 4 3 2 7 7 C 1.46506 * 119.99889 * 175.00023 * 6 4 3 8 8 C 1.53001 * 109.46691 * 278.11105 * 7 6 4 9 9 H 1.09007 * 112.73735 * 66.06357 * 8 7 6 10 10 C 1.53491 * 113.47136 * 196.80935 * 8 7 6 11 11 C 1.53611 * 83.30863 * 140.82801 * 10 8 7 12 12 N 1.47066 * 88.00602 * 333.98306 * 11 10 8 13 13 C 1.34772 * 136.05781 * 207.10084 * 12 11 10 14 14 O 1.21286 * 119.99973 * 185.04019 * 13 12 11 15 15 C 1.50699 * 120.00284 * 5.03981 * 13 12 11 16 16 S 1.80992 * 109.47365 * 179.97438 * 15 13 12 17 17 C 1.76207 * 100.00149 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99753 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99752 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00426 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99530 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47281 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47505 * 120.00122 * 21 19 17 24 24 H 1.48501 * 109.46907 * 239.99932 * 21 19 17 25 25 C 1.53772 * 113.61531 * 73.45472 * 3 2 1 26 26 C 1.53954 * 87.01961 * 89.23466 * 25 3 2 27 27 C 1.53775 * 87.11146 * 25.36129 * 26 25 3 28 28 H 1.08996 * 109.47124 * 304.24828 * 1 2 3 29 29 H 1.09000 * 109.46524 * 64.25089 * 1 2 3 30 30 H 1.09003 * 109.47103 * 184.24418 * 1 2 3 31 31 H 1.09003 * 109.47402 * 239.99190 * 2 1 3 32 32 H 1.09007 * 109.46929 * 119.99959 * 2 1 3 33 33 H 0.96999 * 120.00283 * 355.26729 * 6 4 3 34 34 H 1.08997 * 109.46903 * 38.10315 * 7 6 4 35 35 H 1.08993 * 109.47373 * 158.11057 * 7 6 4 36 36 H 1.08998 * 114.20886 * 254.43923 * 10 8 7 37 37 H 1.09004 * 114.20356 * 27.26096 * 10 8 7 38 38 H 1.08992 * 113.51449 * 219.18421 * 11 10 8 39 39 H 1.09003 * 113.46192 * 88.76697 * 11 10 8 40 40 H 1.09001 * 109.47348 * 300.00239 * 15 13 12 41 41 H 1.09006 * 109.46426 * 59.99950 * 15 13 12 42 42 H 0.97003 * 119.99784 * 180.02562 * 20 19 17 43 43 H 1.08999 * 113.61507 * 203.75319 * 25 3 2 44 44 H 1.08996 * 113.61710 * 334.65348 * 25 3 2 45 45 H 1.09001 * 113.53736 * 270.80970 * 26 25 3 46 46 H 1.09003 * 113.66431 * 139.93274 * 26 25 3 47 47 H 1.09000 * 113.61585 * 220.09269 * 27 26 25 48 48 H 1.09000 * 113.61368 * 89.18765 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5362 2.2413 -1.1745 5 8 0.8503 3.2242 -0.9897 6 7 1.8478 1.8632 -2.4300 7 6 1.2696 2.5732 -3.5736 8 6 -0.1380 2.0392 -3.8466 9 1 -0.8373 2.2634 -3.0411 10 6 -0.6713 2.4051 -5.2386 11 6 -1.2397 0.9786 -5.1985 12 7 -0.1587 0.6293 -4.2646 13 6 0.5164 -0.4901 -3.9366 14 8 1.3222 -0.4688 -3.0304 15 6 0.2702 -1.7683 -4.6959 16 16 1.3202 -3.0808 -4.0245 17 6 0.8416 -4.4188 -5.0665 18 1 0.0995 -4.2652 -5.8359 19 6 1.4184 -5.6699 -4.8983 20 7 2.3226 -5.8572 -3.9603 21 14 0.9115 -7.0881 -6.0035 22 1 -0.1144 -6.6204 -6.9698 23 1 2.0981 -7.5877 -6.7435 24 1 0.3474 -8.1839 -5.1751 25 6 1.8672 2.1570 1.3506 26 6 3.2570 1.6115 1.7260 27 6 3.5577 1.5592 0.2188 28 1 -0.3633 0.5783 0.8494 29 1 -0.3632 0.4465 -0.9257 30 1 -0.3633 -1.0249 0.0761 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 2.4519 1.1185 -2.5764 34 1 1.2170 3.6388 -3.3508 35 1 1.8946 2.4161 -4.4526 36 1 -1.4288 3.1889 -5.2352 37 1 0.1047 2.5560 -5.9891 38 1 -1.1738 0.4572 -6.1533 39 1 -2.2332 0.9197 -4.7540 40 1 -0.7771 -2.0539 -4.5968 41 1 0.5073 -1.6167 -5.7490 42 1 2.7259 -6.7316 -3.8431 43 1 1.8321 3.2433 1.2685 44 1 1.0589 1.7512 1.9590 45 1 3.2262 0.6302 2.1994 46 1 3.8751 2.3258 2.2700 47 1 4.1123 0.6715 -0.0853 48 1 3.9857 2.4818 -0.1733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649530293.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:10 Heat of formation + Delta-G solvation = -19.817058 kcal Electronic energy + Delta-G solvation = -28857.721642 eV Core-core repulsion = 25040.819828 eV Total energy + Delta-G solvation = -3816.901814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.82605 -40.08785 -37.69903 -37.36769 -34.36194 -32.47769 -32.15292 -30.75088 -28.68442 -28.13973 -26.05029 -25.54539 -25.51938 -23.41957 -22.46722 -22.10520 -20.70719 -19.01847 -18.37299 -17.74463 -17.03246 -16.65320 -16.15350 -15.94139 -15.31214 -15.11218 -14.94644 -14.84596 -14.38657 -13.96565 -13.83758 -13.78858 -13.29829 -13.00685 -12.82624 -12.57644 -12.48038 -12.36882 -12.32600 -11.97552 -11.79514 -11.61588 -11.50469 -11.29918 -11.16420 -11.10969 -11.07442 -11.01018 -10.79122 -10.73848 -10.24433 -10.08004 -9.84769 -9.48121 -9.26818 -9.11944 -8.84140 -8.46890 -8.29723 -6.54447 -6.27080 -3.97037 2.72243 2.87076 3.01148 3.17837 3.21263 3.27094 3.44415 3.62608 4.15862 4.21185 4.52057 4.56433 4.67430 4.75960 4.80726 4.81200 4.98092 5.03868 5.08922 5.20547 5.27772 5.34557 5.39965 5.44764 5.52407 5.53599 5.60723 5.63278 5.68007 5.76624 5.80021 5.83258 5.90735 5.94281 5.95629 6.01562 6.11151 6.14908 6.18302 6.30926 6.41421 6.52700 6.67196 6.70725 7.55378 7.81518 7.89943 8.30552 8.45431 8.64073 9.19176 10.80293 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.003586 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.755780 B = 7807.138933 C = 9559.587564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.098 4.098 4 C 0.537 3.463 5 O -0.561 6.561 6 N -0.707 5.707 7 C 0.113 3.887 8 C 0.117 3.883 9 H 0.091 0.909 10 C -0.149 4.149 11 C 0.101 3.899 12 N -0.646 5.646 13 C 0.565 3.435 14 O -0.510 6.510 15 C -0.145 4.145 16 S -0.055 6.055 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.075 3.925 20 N -0.867 5.867 21 Si 0.917 3.083 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.115 4.115 26 C -0.140 4.140 27 C -0.127 4.127 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.415 0.585 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.268 0.732 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.971 17.559 2.409 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.135 4.135 3 C -0.101 4.101 4 C 0.324 3.676 5 O -0.440 6.440 6 N -0.360 5.360 7 C -0.013 4.013 8 C 0.012 3.988 9 H 0.109 0.891 10 C -0.187 4.187 11 C -0.023 4.023 12 N -0.385 5.385 13 C 0.355 3.645 14 O -0.385 6.385 15 C -0.296 4.296 16 S 0.171 5.829 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.134 4.134 20 N -0.503 5.503 21 Si 0.743 3.257 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.152 4.152 26 C -0.177 4.177 27 C -0.165 4.165 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.255 0.745 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.998 17.905 4.019 18.459 hybrid contribution -1.239 -1.429 -1.962 2.726 sum -3.237 16.476 2.056 16.917 Atomic orbital electron populations 1.21609 0.95720 1.01445 1.00930 1.21350 0.96205 0.91904 1.04009 1.22133 0.97188 0.97176 0.93587 1.20357 0.79103 0.83937 0.84213 1.90612 1.39806 1.27651 1.85939 1.46077 1.49085 1.36277 1.04606 1.21564 0.92943 0.97483 0.89308 1.23068 0.97975 0.80686 0.97042 0.89108 1.23484 1.01401 0.97032 0.96827 1.22879 0.91689 0.93641 0.94083 1.49844 1.37716 1.08034 1.42857 1.19852 0.79799 0.82203 0.82612 1.90443 1.35351 1.83236 1.29478 1.23470 1.05991 0.97163 1.02939 1.85234 1.51265 0.99668 1.46691 1.22903 1.28386 0.96238 1.20867 0.91011 1.24964 0.94582 0.98167 0.95712 1.70014 1.25633 1.23752 1.30863 0.86143 0.78513 0.81071 0.79944 1.19638 1.20536 1.20543 1.22872 0.97236 1.00564 0.94558 1.22846 0.97252 1.01549 0.96076 1.22932 0.94178 1.02561 0.96831 0.93563 0.93306 0.92481 0.88456 0.91613 0.74536 0.89628 0.90189 0.89327 0.88564 0.90276 0.90053 0.89744 0.89579 0.92235 0.89534 0.91156 0.89840 0.91433 0.90343 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.54 37.16 0.35 -1.74 16 2 C -0.10 -1.41 5.24 -26.73 -0.14 -1.55 16 3 C -0.10 -1.30 0.80 -154.85 -0.12 -1.43 16 4 C 0.54 8.00 5.66 -10.98 -0.06 7.94 16 5 O -0.56 -9.65 15.75 5.56 0.09 -9.56 16 6 N -0.71 -9.76 3.79 -60.29 -0.23 -9.99 16 7 C 0.11 1.31 5.92 -4.04 -0.02 1.29 16 8 C 0.12 1.33 4.24 -72.39 -0.31 1.02 16 9 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 10 C -0.15 -1.16 8.03 -26.16 -0.21 -1.37 16 11 C 0.10 0.96 8.42 -8.45 -0.07 0.89 16 12 N -0.65 -8.54 3.57 -177.24 -0.63 -9.18 16 13 C 0.57 9.71 7.97 -10.99 -0.09 9.62 16 14 O -0.51 -9.49 10.68 5.55 0.06 -9.43 16 15 C -0.15 -2.81 5.99 36.01 0.22 -2.60 16 16 S -0.06 -1.41 20.57 -107.50 -2.21 -3.62 16 17 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.08 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -25.42 13.22 55.49 0.73 -24.69 16 21 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.11 -1.39 6.76 -25.83 -0.17 -1.56 16 26 C -0.14 -1.45 7.74 -25.83 -0.20 -1.65 16 27 C -0.13 -1.47 7.22 -25.92 -0.19 -1.65 16 28 H 0.05 0.64 7.18 -51.93 -0.37 0.26 16 29 H 0.05 0.81 7.50 -51.93 -0.39 0.42 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.65 5.99 -51.93 -0.31 1.34 16 32 H 0.07 0.87 7.31 -51.92 -0.38 0.49 16 33 H 0.41 6.14 6.64 -40.82 -0.27 5.87 16 34 H 0.09 0.97 7.61 -51.93 -0.40 0.58 16 35 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.68 8.07 -51.93 -0.42 0.26 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.59 8.14 -51.92 -0.42 1.17 16 41 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.09 1.11 7.63 -51.93 -0.40 0.72 16 44 H 0.07 0.83 7.26 -51.93 -0.38 0.46 16 45 H 0.08 0.83 7.60 -51.93 -0.39 0.43 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 48 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -32.35 395.29 -9.97 -42.32 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.89 Total: 7.55 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.82 Total: -5.35 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: -0.13 Total: -43.85 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.15 Total: -18.99 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.21 Total: -3.62 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.35 -9.97 -42.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649530293.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.498 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds