Wall clock time and date at job start Sat Apr 11 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47506 * 2 1 4 4 C 1.50709 * 112.84500 * 302.26074 * 3 2 1 5 5 O 1.21273 * 119.99720 * 118.55294 * 4 3 2 6 6 N 1.34771 * 119.99844 * 298.55563 * 4 3 2 7 7 C 1.46506 * 119.99889 * 175.00023 * 6 4 3 8 8 C 1.53001 * 109.46691 * 278.11105 * 7 6 4 9 9 H 1.09007 * 112.73735 * 66.06357 * 8 7 6 10 10 C 1.53491 * 113.47136 * 196.80935 * 8 7 6 11 11 C 1.53611 * 83.30863 * 140.82801 * 10 8 7 12 12 N 1.47066 * 88.00602 * 333.98306 * 11 10 8 13 13 C 1.34772 * 136.05781 * 207.10084 * 12 11 10 14 14 O 1.21286 * 119.99973 * 185.04019 * 13 12 11 15 15 C 1.50699 * 120.00284 * 5.03981 * 13 12 11 16 16 S 1.80992 * 109.47365 * 179.97438 * 15 13 12 17 17 C 1.76207 * 100.00149 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99753 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99752 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00426 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99530 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47281 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47505 * 120.00122 * 21 19 17 24 24 H 1.48501 * 109.46907 * 239.99932 * 21 19 17 25 25 C 1.53772 * 113.61531 * 73.45472 * 3 2 1 26 26 C 1.53954 * 87.01961 * 89.23466 * 25 3 2 27 27 C 1.53775 * 87.11146 * 25.36129 * 26 25 3 28 28 H 1.08996 * 109.47124 * 304.24828 * 1 2 3 29 29 H 1.09000 * 109.46524 * 64.25089 * 1 2 3 30 30 H 1.09003 * 109.47103 * 184.24418 * 1 2 3 31 31 H 1.09003 * 109.47402 * 239.99190 * 2 1 3 32 32 H 1.09007 * 109.46929 * 119.99959 * 2 1 3 33 33 H 0.96999 * 120.00283 * 355.26729 * 6 4 3 34 34 H 1.08997 * 109.46903 * 38.10315 * 7 6 4 35 35 H 1.08993 * 109.47373 * 158.11057 * 7 6 4 36 36 H 1.08998 * 114.20886 * 254.43923 * 10 8 7 37 37 H 1.09004 * 114.20356 * 27.26096 * 10 8 7 38 38 H 1.08992 * 113.51449 * 219.18421 * 11 10 8 39 39 H 1.09003 * 113.46192 * 88.76697 * 11 10 8 40 40 H 1.09001 * 109.47348 * 300.00239 * 15 13 12 41 41 H 1.09006 * 109.46426 * 59.99950 * 15 13 12 42 42 H 0.97003 * 119.99784 * 180.02562 * 20 19 17 43 43 H 1.08999 * 113.61507 * 203.75319 * 25 3 2 44 44 H 1.08996 * 113.61710 * 334.65348 * 25 3 2 45 45 H 1.09001 * 113.53736 * 270.80970 * 26 25 3 46 46 H 1.09003 * 113.66431 * 139.93274 * 26 25 3 47 47 H 1.09000 * 113.61585 * 220.09269 * 27 26 25 48 48 H 1.09000 * 113.61368 * 89.18765 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5362 2.2413 -1.1745 5 8 0.8503 3.2242 -0.9897 6 7 1.8478 1.8632 -2.4300 7 6 1.2696 2.5732 -3.5736 8 6 -0.1380 2.0392 -3.8466 9 1 -0.8373 2.2634 -3.0411 10 6 -0.6713 2.4051 -5.2386 11 6 -1.2397 0.9786 -5.1985 12 7 -0.1587 0.6293 -4.2646 13 6 0.5164 -0.4901 -3.9366 14 8 1.3222 -0.4688 -3.0304 15 6 0.2702 -1.7683 -4.6959 16 16 1.3202 -3.0808 -4.0245 17 6 0.8416 -4.4188 -5.0665 18 1 0.0995 -4.2652 -5.8359 19 6 1.4184 -5.6699 -4.8983 20 7 2.3226 -5.8572 -3.9603 21 14 0.9115 -7.0881 -6.0035 22 1 -0.1144 -6.6204 -6.9698 23 1 2.0981 -7.5877 -6.7435 24 1 0.3474 -8.1839 -5.1751 25 6 1.8672 2.1570 1.3506 26 6 3.2570 1.6115 1.7260 27 6 3.5577 1.5592 0.2188 28 1 -0.3633 0.5783 0.8494 29 1 -0.3632 0.4465 -0.9257 30 1 -0.3633 -1.0249 0.0761 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 2.4519 1.1185 -2.5764 34 1 1.2170 3.6388 -3.3508 35 1 1.8946 2.4161 -4.4526 36 1 -1.4288 3.1889 -5.2352 37 1 0.1047 2.5560 -5.9891 38 1 -1.1738 0.4572 -6.1533 39 1 -2.2332 0.9197 -4.7540 40 1 -0.7771 -2.0539 -4.5968 41 1 0.5073 -1.6167 -5.7490 42 1 2.7259 -6.7316 -3.8431 43 1 1.8321 3.2433 1.2685 44 1 1.0589 1.7512 1.9590 45 1 3.2262 0.6302 2.1994 46 1 3.8751 2.3258 2.2700 47 1 4.1123 0.6715 -0.0853 48 1 3.9857 2.4818 -0.1733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649530293.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:09 Heat of formation + Delta-G solvation = -39.194303 kcal Electronic energy + Delta-G solvation = -28858.561902 eV Core-core repulsion = 25040.819828 eV Total energy + Delta-G solvation = -3817.742075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.88621 -41.12755 -38.88062 -38.50706 -35.48067 -34.58538 -33.29871 -32.04176 -29.75281 -29.34378 -27.63452 -27.05164 -26.51589 -24.41607 -23.53047 -23.09998 -21.75123 -20.23066 -19.69891 -19.27004 -18.14147 -17.86544 -17.24938 -17.03266 -16.88066 -16.49822 -16.35017 -16.01856 -15.72473 -15.56294 -14.97483 -14.83697 -14.63555 -14.30905 -14.18762 -13.72720 -13.53929 -13.37567 -13.30630 -13.28974 -13.12449 -12.92822 -12.70811 -12.67043 -12.56882 -12.42810 -12.35456 -12.18286 -11.94270 -11.85997 -11.69531 -11.25765 -11.15866 -11.11452 -10.73546 -10.43803 -10.26407 -9.93793 -9.55522 -8.61635 -8.35391 -6.10417 1.24454 1.39373 1.43715 1.54568 1.67041 1.71385 2.02842 2.27282 2.50653 2.99103 3.26268 3.42309 3.50241 3.56375 3.72883 3.78541 3.87932 3.91274 4.08589 4.09493 4.25435 4.28891 4.30904 4.38475 4.48116 4.50397 4.52190 4.57408 4.67265 4.76038 4.76822 4.81139 4.85057 4.98354 4.99202 5.00591 5.05834 5.12544 5.14243 5.30013 5.32748 5.41730 5.43820 5.50779 5.63035 6.19223 6.65292 6.75518 7.07143 7.24340 7.41393 8.73433 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.003586 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.755780 B = 7807.138933 C = 9559.587564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.105 4.105 4 C 0.534 3.466 5 O -0.588 6.588 6 N -0.706 5.706 7 C 0.107 3.893 8 C 0.113 3.887 9 H 0.076 0.924 10 C -0.121 4.121 11 C 0.094 3.906 12 N -0.646 5.646 13 C 0.559 3.441 14 O -0.532 6.532 15 C -0.121 4.121 16 S -0.123 6.123 17 C -0.551 4.551 18 H 0.075 0.925 19 C 0.019 3.981 20 N -0.908 5.908 21 Si 0.991 3.009 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.274 1.274 25 C -0.113 4.113 26 C -0.127 4.127 27 C -0.125 4.125 28 H 0.058 0.942 29 H 0.027 0.973 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.410 0.590 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.825 18.531 1.218 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.128 4.128 3 C -0.108 4.108 4 C 0.321 3.679 5 O -0.469 6.469 6 N -0.357 5.357 7 C -0.018 4.018 8 C 0.009 3.991 9 H 0.094 0.906 10 C -0.159 4.159 11 C -0.028 4.028 12 N -0.383 5.383 13 C 0.348 3.652 14 O -0.409 6.409 15 C -0.272 4.272 16 S 0.104 5.896 17 C -0.699 4.699 18 H 0.094 0.906 19 C -0.186 4.186 20 N -0.544 5.544 21 Si 0.814 3.186 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.200 1.200 25 C -0.151 4.151 26 C -0.164 4.164 27 C -0.162 4.162 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.248 0.752 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.095 0.905 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.880 18.913 2.793 19.334 hybrid contribution -1.038 -1.613 -1.612 2.506 sum -3.918 17.300 1.181 17.777 Atomic orbital electron populations 1.21518 0.96225 1.00826 1.00256 1.21228 0.95653 0.92693 1.03208 1.22177 0.98590 0.96219 0.93796 1.20617 0.78694 0.83692 0.84866 1.90585 1.41127 1.28898 1.86339 1.46138 1.48679 1.35861 1.05063 1.21761 0.93393 0.97529 0.89068 1.23218 0.97551 0.79330 0.99005 0.90644 1.23450 1.01853 0.96582 0.94021 1.23214 0.91176 0.94719 0.93734 1.49853 1.37843 1.07606 1.43036 1.19451 0.80611 0.82634 0.82490 1.90453 1.36546 1.83671 1.30194 1.23260 1.04421 0.96196 1.03356 1.85290 1.53833 1.02319 1.48108 1.23242 1.28473 0.97122 1.21039 0.90639 1.25992 0.94377 1.01086 0.97146 1.70156 1.26943 1.24596 1.32716 0.85010 0.78463 0.77181 0.77971 1.18397 1.19819 1.19986 1.22851 0.98531 0.99993 0.93753 1.22818 0.96036 1.02258 0.95304 1.22939 0.92702 1.02673 0.97919 0.92346 0.95399 0.93299 0.91143 0.90415 0.75150 0.89177 0.88821 0.86418 0.87151 0.89209 0.88863 0.89266 0.88477 0.92002 0.90254 0.90991 0.89141 0.89621 0.90540 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.54 71.98 0.69 -3.35 16 2 C -0.09 -2.67 5.24 30.59 0.16 -2.51 16 3 C -0.10 -2.80 0.80 -52.40 -0.04 -2.84 16 4 C 0.53 16.07 5.66 87.66 0.50 16.57 16 5 O -0.59 -20.34 15.75 -3.01 -0.05 -20.39 16 6 N -0.71 -19.68 3.79 -463.06 -1.75 -21.43 16 7 C 0.11 2.40 5.92 86.38 0.51 2.91 16 8 C 0.11 2.40 4.24 41.79 0.18 2.58 16 9 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 10 C -0.12 -1.46 8.03 30.96 0.25 -1.21 16 11 C 0.09 1.53 8.42 83.22 0.70 2.23 16 12 N -0.65 -16.36 3.57 -833.06 -2.97 -19.33 16 13 C 0.56 19.27 7.97 87.66 0.70 19.97 16 14 O -0.53 -20.39 10.68 -3.05 -0.03 -20.42 16 15 C -0.12 -4.71 5.99 71.24 0.43 -4.28 16 16 S -0.12 -6.45 20.57 -56.49 -1.16 -7.62 16 17 C -0.55 -30.86 9.50 67.95 0.65 -30.21 16 18 H 0.08 4.01 7.80 -2.91 -0.02 3.99 16 19 C 0.02 1.07 5.49 84.86 0.47 1.54 16 20 N -0.91 -54.24 13.22 21.65 0.29 -53.95 16 21 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 C -0.11 -2.68 6.76 31.18 0.21 -2.46 16 26 C -0.13 -2.45 7.74 31.18 0.24 -2.20 16 27 C -0.12 -2.81 7.22 31.12 0.22 -2.58 16 28 H 0.06 1.62 7.18 -2.39 -0.02 1.60 16 29 H 0.03 0.95 7.50 -2.39 -0.02 0.93 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 2.51 5.99 -2.39 -0.01 2.49 16 32 H 0.08 2.07 7.31 -2.38 -0.02 2.06 16 33 H 0.41 12.48 6.64 -92.71 -0.62 11.86 16 34 H 0.09 1.95 7.61 -2.39 -0.02 1.93 16 35 H 0.09 1.82 8.07 -2.39 -0.02 1.80 16 36 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.11 1.11 8.07 -2.39 -0.02 1.09 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 3.34 8.14 -2.39 -0.02 3.33 16 41 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 42 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 43 H 0.08 2.00 7.63 -2.39 -0.02 1.98 16 44 H 0.07 1.65 7.26 -2.39 -0.02 1.63 16 45 H 0.09 1.64 7.60 -2.39 -0.02 1.62 16 46 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 48 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 Total: -1.00 -72.29 395.29 2.54 -69.75 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 0.34 Total: 34.23 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.85 Total: -5.86 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -4.44 Total: -94.71 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.08 Total: -40.81 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -6.45 SS G_CDS: -1.16 Total: -7.62 kcal Total: -72.29 2.54 -69.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649530293.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.557 kcal (2) G-P(sol) polarization free energy of solvation -72.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds