Wall clock time and date at job start Sat Apr 11 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99754 * 2 1 4 4 C 1.50696 * 120.00455 * 180.02562 * 2 1 3 5 5 C 1.52995 * 109.47465 * 95.00283 * 4 2 1 6 6 N 1.46899 * 109.47474 * 180.02562 * 5 4 2 7 7 C 1.48045 * 111.00319 * 169.99909 * 6 5 4 8 8 C 1.53456 * 86.15706 * 222.78246 * 7 6 5 9 9 C 1.48285 * 111.08097 * 70.61250 * 6 5 4 10 10 C 1.52901 * 113.51320 * 137.74099 * 8 7 6 11 11 N 1.47333 * 108.05025 * 83.01953 * 10 8 7 12 12 C 1.34782 * 121.04634 * 228.42462 * 11 10 8 13 13 O 1.21276 * 119.99902 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99844 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47011 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99823 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00064 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00611 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99628 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47108 * 89.99553 * 20 18 16 22 22 H 1.48497 * 109.46993 * 209.99527 * 20 18 16 23 23 H 1.48497 * 109.47189 * 329.99487 * 20 18 16 24 24 C 1.47120 * 117.90313 * 48.40880 * 11 10 8 25 25 C 1.53234 * 108.70637 * 307.75445 * 24 11 10 26 26 O 1.42493 * 113.76986 * 268.76791 * 8 7 6 27 27 H 1.08000 * 119.99857 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99825 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47366 * 239.99462 * 3 2 1 30 30 H 1.09000 * 109.47238 * 0.02562 * 3 2 1 31 31 H 1.09009 * 109.47118 * 119.99976 * 3 2 1 32 32 H 1.09007 * 109.46779 * 335.00056 * 4 2 1 33 33 H 1.08998 * 109.47070 * 215.00476 * 4 2 1 34 34 H 1.08994 * 109.47577 * 59.99868 * 5 4 2 35 35 H 1.09004 * 109.46730 * 300.00052 * 5 4 2 36 36 H 1.09002 * 113.78555 * 108.44514 * 7 6 5 37 37 H 1.08998 * 113.78240 * 337.11526 * 7 6 5 38 38 H 1.09004 * 113.67944 * 22.86553 * 9 6 5 39 39 H 1.09001 * 113.95876 * 251.47059 * 9 6 5 40 40 H 1.08997 * 109.74205 * 202.65691 * 10 8 7 41 41 H 1.08997 * 109.74382 * 323.32810 * 10 8 7 42 42 H 1.09008 * 109.46761 * 300.00220 * 14 12 11 43 43 H 1.09000 * 109.47215 * 59.99971 * 14 12 11 44 44 H 0.96995 * 120.00313 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.60145 * 67.52494 * 24 11 10 46 46 H 1.08998 * 109.60187 * 187.99117 * 24 11 10 47 47 H 1.08997 * 109.49109 * 174.10708 * 25 24 11 48 48 H 1.08998 * 109.48892 * 294.16118 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4276 -1.6832 -1.4377 6 7 3.1616 -2.9556 -1.4383 7 6 3.3226 -3.4746 -2.8154 8 6 2.9686 -4.8477 -2.2287 9 6 2.2672 -4.0875 -1.0953 10 6 2.0118 -5.6570 -3.1046 11 7 2.8067 -6.3350 -4.1435 12 6 2.4430 -6.2848 -5.4404 13 8 1.4476 -5.6742 -5.7678 14 6 3.2732 -6.9874 -6.4835 15 16 2.5316 -6.7353 -8.1152 16 6 3.6720 -7.6356 -9.1120 17 1 4.5176 -8.1276 -8.6547 18 6 3.4836 -7.7124 -10.4850 19 7 4.3352 -8.3853 -11.2296 20 14 2.0213 -6.8606 -11.2761 21 1 2.4008 -5.4760 -11.6557 22 1 1.6083 -7.6109 -12.4892 23 1 0.8924 -6.8179 -10.3123 24 6 4.0101 -7.0681 -3.7207 25 6 4.8824 -6.1345 -2.8748 26 8 4.1015 -5.5992 -1.8017 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 2.6902 1.3629 -0.8899 30 1 1.3551 2.1336 0.0005 31 1 2.6901 1.3629 0.8901 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1990 0.5890 34 1 3.0524 -0.9027 -1.8717 35 1 1.5168 -1.7892 -2.0272 36 1 4.3427 -3.4080 -3.1939 37 1 2.5822 -3.0929 -3.5184 38 1 1.2132 -3.8864 -1.2874 39 1 2.4465 -4.5094 -0.1063 40 1 1.4928 -6.3976 -2.4962 41 1 1.2866 -4.9904 -3.5712 42 1 4.2845 -6.5804 -6.4776 43 1 3.3095 -8.0539 -6.2613 44 1 4.2037 -8.4386 -12.1892 45 1 3.7204 -7.9352 -3.1273 46 1 4.5676 -7.3932 -4.5991 47 1 5.7250 -6.6936 -2.4679 48 1 5.2529 -5.3199 -3.4971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673500962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:29 Heat of formation + Delta-G solvation = -19.140226 kcal Electronic energy + Delta-G solvation = -27431.010497 eV Core-core repulsion = 23614.138032 eV Total energy + Delta-G solvation = -3816.872465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33431 -39.36034 -37.76130 -36.47730 -34.76712 -32.48102 -32.25580 -30.21873 -29.53670 -27.72939 -27.31958 -26.60579 -25.67054 -25.05525 -23.56393 -21.79005 -19.87913 -19.31730 -18.73021 -17.82013 -17.01020 -16.94510 -16.50078 -15.96429 -15.56650 -15.49618 -15.23686 -14.99837 -14.96255 -14.45596 -14.15130 -14.08577 -13.87507 -13.65453 -13.51358 -13.30361 -12.90369 -12.84753 -12.65828 -12.29935 -12.14027 -12.05765 -11.87983 -11.70018 -11.43844 -11.30101 -11.26430 -11.10283 -11.04699 -10.81068 -10.62993 -10.15741 -9.90140 -9.59314 -9.39628 -9.19647 -9.04475 -8.56067 -8.54990 -6.97506 -6.32863 -4.05338 1.85161 2.56032 2.81209 3.06185 3.16627 3.29637 3.46776 3.52158 3.58215 4.11224 4.21706 4.29052 4.44944 4.51805 4.53562 4.64434 4.66851 4.80780 4.86939 4.95086 5.02229 5.03100 5.06115 5.11511 5.17056 5.19326 5.24457 5.31247 5.32744 5.37649 5.44730 5.48121 5.50145 5.57210 5.59508 5.64677 5.65885 5.67755 5.71504 5.90472 5.97277 6.27293 6.31022 6.50409 6.65968 6.89757 7.30273 7.89988 8.30007 8.37231 9.13127 10.76242 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.002339 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.706265 B =11968.225028 C =13042.045928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.080 4.080 5 C 0.025 3.975 6 N -0.469 5.469 7 C -0.015 4.015 8 C 0.079 3.921 9 C 0.021 3.979 10 C 0.099 3.901 11 N -0.621 5.621 12 C 0.536 3.464 13 O -0.517 6.517 14 C -0.122 4.122 15 S -0.141 6.141 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.879 5.879 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.072 3.928 25 C 0.046 3.954 26 O -0.343 6.343 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.271 0.729 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.110 0.890 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 11.559 25.047 27.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.125 4.125 3 C -0.177 4.177 4 C -0.118 4.118 5 C -0.104 4.104 6 N -0.191 5.191 7 C -0.144 4.144 8 C 0.037 3.963 9 C -0.108 4.108 10 C -0.025 4.025 11 N -0.358 5.358 12 C 0.324 3.676 13 O -0.391 6.391 14 C -0.272 4.272 15 S 0.085 5.915 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.515 5.515 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.052 4.052 25 C -0.031 4.031 26 O -0.260 6.260 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.120 0.880 47 H 0.128 0.872 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.108 12.527 24.949 28.090 hybrid contribution -0.018 -0.546 -0.995 1.135 sum -3.126 11.981 23.954 26.965 Atomic orbital electron populations 1.23742 0.95201 1.01888 1.02496 1.21737 0.95400 0.95769 0.99626 1.20883 1.00256 0.94236 1.02285 1.20578 1.00394 0.94176 0.96647 1.22641 0.97332 0.93653 0.96731 1.68668 1.34557 1.00565 1.15311 1.24491 1.03634 0.94397 0.91856 1.22922 0.88055 0.90191 0.95132 1.24024 0.96033 0.90883 0.99828 1.22116 0.93941 0.97134 0.89291 1.48132 1.27333 1.53972 1.06326 1.20334 0.85296 0.80049 0.81883 1.90689 1.26364 1.42163 1.79895 1.23306 1.02389 1.03293 0.98235 1.84808 1.38633 1.71268 0.96795 1.22291 1.12655 1.37595 0.94393 0.89358 1.24710 0.96312 0.94143 0.96123 1.69928 1.35731 1.39696 1.06176 0.86740 0.84181 0.80290 0.80670 1.19205 1.19892 1.15948 1.22439 0.86784 0.95203 1.00744 1.23032 0.93578 0.96821 0.89671 1.87944 1.38320 1.68944 1.30830 0.88479 0.88565 0.91494 0.92080 0.91540 0.91316 0.90367 0.90328 0.93840 0.88794 0.90073 0.89710 0.88041 0.90635 0.88008 0.88511 0.88388 0.91895 0.90319 0.88027 0.87165 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.39 13.90 29.02 0.40 -0.99 16 2 C -0.12 -0.91 5.31 -101.07 -0.54 -1.45 16 3 C -0.12 -0.75 10.12 36.01 0.36 -0.38 16 4 C -0.08 -0.61 5.45 -27.89 -0.15 -0.76 16 5 C 0.02 0.21 4.80 -3.83 -0.02 0.20 16 6 N -0.47 -4.60 6.27 -239.60 -1.50 -6.10 16 7 C -0.01 -0.16 7.11 -2.96 -0.02 -0.18 16 8 C 0.08 0.81 1.21 -90.26 -0.11 0.70 16 9 C 0.02 0.19 6.52 -2.83 -0.02 0.17 16 10 C 0.10 1.14 5.78 -3.64 -0.02 1.12 16 11 N -0.62 -8.23 3.03 -172.44 -0.52 -8.75 16 12 C 0.54 9.40 7.73 -10.98 -0.08 9.32 16 13 O -0.52 -10.85 15.36 5.56 0.09 -10.76 16 14 C -0.12 -2.30 4.52 36.01 0.16 -2.14 16 15 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 16 C -0.52 -14.78 10.04 30.94 0.31 -14.47 16 17 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 18 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 19 N -0.88 -26.20 13.97 55.49 0.78 -25.42 16 20 Si 0.86 21.55 27.74 -169.99 -4.72 16.83 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 24 C 0.07 0.73 6.50 -3.58 -0.02 0.71 16 25 C 0.05 0.43 6.88 37.28 0.26 0.69 16 26 O -0.34 -3.74 10.52 -35.23 -0.37 -4.11 16 27 H 0.10 0.61 7.83 -52.49 -0.41 0.20 16 28 H 0.10 0.65 7.99 -52.49 -0.42 0.23 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.34 7.78 -51.93 -0.40 -0.06 16 31 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 32 H 0.07 0.50 7.39 -51.93 -0.38 0.12 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.38 7.70 -51.93 -0.40 -0.02 16 36 H 0.09 1.05 7.27 -51.93 -0.38 0.68 16 37 H 0.08 0.90 7.59 -51.93 -0.39 0.51 16 38 H 0.08 0.63 7.73 -51.93 -0.40 0.23 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.10 1.29 6.91 -51.93 -0.36 0.93 16 42 H 0.10 1.69 7.69 -51.91 -0.40 1.29 16 43 H 0.10 1.73 7.99 -51.92 -0.41 1.31 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.10 1.01 6.03 -51.93 -0.31 0.69 16 47 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 0.58 7.19 -51.93 -0.37 0.21 16 LS Contribution 396.34 15.07 5.97 5.97 Total: -1.00 -33.31 396.34 -9.86 -43.17 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.01 Total: -0.53 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 0.42 Total: -4.79 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: -1.25 Total: -40.27 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.29 Total: -14.87 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.72 Total: 16.83 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.31 -9.86 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673500962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.027 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds