Wall clock time and date at job start Sat Apr 11 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99754 * 2 1 4 4 C 1.50696 * 120.00455 * 180.02562 * 2 1 3 5 5 C 1.52995 * 109.47465 * 95.00283 * 4 2 1 6 6 N 1.46899 * 109.47474 * 180.02562 * 5 4 2 7 7 C 1.48045 * 111.00319 * 169.99909 * 6 5 4 8 8 C 1.53456 * 86.15706 * 222.78246 * 7 6 5 9 9 C 1.48285 * 111.08097 * 70.61250 * 6 5 4 10 10 C 1.52901 * 113.51320 * 137.74099 * 8 7 6 11 11 N 1.47333 * 108.05025 * 83.01953 * 10 8 7 12 12 C 1.34782 * 121.04634 * 228.42462 * 11 10 8 13 13 O 1.21276 * 119.99902 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99844 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47011 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99823 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00064 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00611 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99628 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47108 * 89.99553 * 20 18 16 22 22 H 1.48497 * 109.46993 * 209.99527 * 20 18 16 23 23 H 1.48497 * 109.47189 * 329.99487 * 20 18 16 24 24 C 1.47120 * 117.90313 * 48.40880 * 11 10 8 25 25 C 1.53234 * 108.70637 * 307.75445 * 24 11 10 26 26 O 1.42493 * 113.76986 * 268.76791 * 8 7 6 27 27 H 1.08000 * 119.99857 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99825 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47366 * 239.99462 * 3 2 1 30 30 H 1.09000 * 109.47238 * 0.02562 * 3 2 1 31 31 H 1.09009 * 109.47118 * 119.99976 * 3 2 1 32 32 H 1.09007 * 109.46779 * 335.00056 * 4 2 1 33 33 H 1.08998 * 109.47070 * 215.00476 * 4 2 1 34 34 H 1.08994 * 109.47577 * 59.99868 * 5 4 2 35 35 H 1.09004 * 109.46730 * 300.00052 * 5 4 2 36 36 H 1.09002 * 113.78555 * 108.44514 * 7 6 5 37 37 H 1.08998 * 113.78240 * 337.11526 * 7 6 5 38 38 H 1.09004 * 113.67944 * 22.86553 * 9 6 5 39 39 H 1.09001 * 113.95876 * 251.47059 * 9 6 5 40 40 H 1.08997 * 109.74205 * 202.65691 * 10 8 7 41 41 H 1.08997 * 109.74382 * 323.32810 * 10 8 7 42 42 H 1.09008 * 109.46761 * 300.00220 * 14 12 11 43 43 H 1.09000 * 109.47215 * 59.99971 * 14 12 11 44 44 H 0.96995 * 120.00313 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.60145 * 67.52494 * 24 11 10 46 46 H 1.08998 * 109.60187 * 187.99117 * 24 11 10 47 47 H 1.08997 * 109.49109 * 174.10708 * 25 24 11 48 48 H 1.08998 * 109.48892 * 294.16118 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4276 -1.6832 -1.4377 6 7 3.1616 -2.9556 -1.4383 7 6 3.3226 -3.4746 -2.8154 8 6 2.9686 -4.8477 -2.2287 9 6 2.2672 -4.0875 -1.0953 10 6 2.0118 -5.6570 -3.1046 11 7 2.8067 -6.3350 -4.1435 12 6 2.4430 -6.2848 -5.4404 13 8 1.4476 -5.6742 -5.7678 14 6 3.2732 -6.9874 -6.4835 15 16 2.5316 -6.7353 -8.1152 16 6 3.6720 -7.6356 -9.1120 17 1 4.5176 -8.1276 -8.6547 18 6 3.4836 -7.7124 -10.4850 19 7 4.3352 -8.3853 -11.2296 20 14 2.0213 -6.8606 -11.2761 21 1 2.4008 -5.4760 -11.6557 22 1 1.6083 -7.6109 -12.4892 23 1 0.8924 -6.8179 -10.3123 24 6 4.0101 -7.0681 -3.7207 25 6 4.8824 -6.1345 -2.8748 26 8 4.1015 -5.5992 -1.8017 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 2.6902 1.3629 -0.8899 30 1 1.3551 2.1336 0.0005 31 1 2.6901 1.3629 0.8901 32 1 1.4386 -2.0856 0.4334 33 1 2.9742 -1.1990 0.5890 34 1 3.0524 -0.9027 -1.8717 35 1 1.5168 -1.7892 -2.0272 36 1 4.3427 -3.4080 -3.1939 37 1 2.5822 -3.0929 -3.5184 38 1 1.2132 -3.8864 -1.2874 39 1 2.4465 -4.5094 -0.1063 40 1 1.4928 -6.3976 -2.4962 41 1 1.2866 -4.9904 -3.5712 42 1 4.2845 -6.5804 -6.4776 43 1 3.3095 -8.0539 -6.2613 44 1 4.2037 -8.4386 -12.1892 45 1 3.7204 -7.9352 -3.1273 46 1 4.5676 -7.3932 -4.5991 47 1 5.7250 -6.6936 -2.4679 48 1 5.2529 -5.3199 -3.4971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673500962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:28 Heat of formation + Delta-G solvation = -42.322970 kcal Electronic energy + Delta-G solvation = -27432.015776 eV Core-core repulsion = 23614.138032 eV Total energy + Delta-G solvation = -3817.877744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.20711 -40.54252 -38.65636 -37.11316 -35.86320 -34.68233 -33.05698 -31.36896 -30.50973 -28.47286 -28.07407 -27.83053 -27.39075 -25.89786 -24.42593 -22.60858 -20.95448 -20.35075 -19.63812 -19.28307 -18.34120 -17.87556 -17.36752 -17.16878 -16.97057 -16.45863 -16.34871 -16.17585 -15.86422 -15.60892 -15.25150 -15.00648 -14.90403 -14.79421 -14.58696 -14.43603 -14.06641 -13.72994 -13.55305 -13.41291 -13.30645 -13.14036 -13.02728 -12.69184 -12.64176 -12.54907 -12.35884 -12.19910 -11.93758 -11.88928 -11.74117 -11.66601 -11.18473 -11.05016 -10.95923 -10.54354 -10.01357 -9.94445 -9.56657 -9.02018 -8.52483 -6.23735 0.93537 1.30095 1.30207 1.42553 1.43680 1.50631 1.91166 2.23454 2.40312 2.65172 2.81803 2.85740 3.28200 3.38569 3.54154 3.76316 3.86115 3.95269 4.00705 4.04475 4.12805 4.21359 4.25127 4.29797 4.33908 4.37636 4.39410 4.45714 4.55447 4.58306 4.64444 4.67200 4.75366 4.80113 4.81952 4.88003 4.91337 5.04413 5.07089 5.12758 5.24999 5.30661 5.69802 5.72788 5.90209 5.98471 6.08088 6.10639 6.12487 6.92586 6.96970 8.59652 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.002339 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.706265 B =11968.225028 C =13042.045928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.121 4.121 4 C -0.074 4.074 5 C 0.029 3.971 6 N -0.476 5.476 7 C -0.017 4.017 8 C 0.083 3.917 9 C 0.029 3.971 10 C 0.098 3.902 11 N -0.610 5.610 12 C 0.538 3.462 13 O -0.559 6.559 14 C -0.107 4.107 15 S -0.175 6.175 16 C -0.527 4.527 17 H 0.064 0.936 18 C 0.046 3.954 19 N -0.915 5.915 20 Si 0.913 3.087 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.237 1.237 24 C 0.066 3.934 25 C 0.047 3.953 26 O -0.350 6.350 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.277 0.723 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.139 0.861 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 11.861 26.965 29.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.135 4.135 3 C -0.177 4.177 4 C -0.111 4.111 5 C -0.100 4.100 6 N -0.199 5.199 7 C -0.146 4.146 8 C 0.041 3.959 9 C -0.100 4.100 10 C -0.025 4.025 11 N -0.344 5.344 12 C 0.326 3.674 13 O -0.437 6.437 14 C -0.258 4.258 15 S 0.051 5.949 16 C -0.675 4.675 17 H 0.082 0.918 18 C -0.160 4.160 19 N -0.553 5.553 20 Si 0.735 3.265 21 H -0.188 1.188 22 H -0.184 1.184 23 H -0.161 1.161 24 C -0.056 4.056 25 C -0.030 4.030 26 O -0.268 6.268 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.086 0.914 45 H 0.117 0.883 46 H 0.124 0.876 47 H 0.156 0.844 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.458 12.817 26.912 30.008 hybrid contribution 0.193 -0.661 -1.420 1.578 sum -3.265 12.156 25.492 28.430 Atomic orbital electron populations 1.23882 0.95254 1.02422 1.02044 1.21843 0.95629 0.96024 1.00024 1.20906 1.00396 0.93991 1.02450 1.20510 1.00353 0.94525 0.95731 1.22610 0.96904 0.93018 0.97445 1.68661 1.35382 1.01328 1.14517 1.24429 1.02845 0.95067 0.92248 1.22906 0.87906 0.89613 0.95502 1.24080 0.96481 0.89811 0.99618 1.22263 0.93988 0.97429 0.88795 1.48114 1.28014 1.53167 1.05136 1.20017 0.84610 0.79743 0.83012 1.90676 1.28037 1.44141 1.80814 1.23272 1.02838 1.04739 0.94904 1.84737 1.38789 1.70818 1.00535 1.22432 1.12542 1.37389 0.95131 0.91755 1.25544 0.98788 0.94834 0.96797 1.70004 1.37435 1.41046 1.06799 0.85889 0.81053 0.79503 0.80066 1.18763 1.18368 1.16106 1.22729 0.85721 0.95782 1.01393 1.23161 0.93840 0.96629 0.89326 1.87947 1.38409 1.68937 1.31471 0.87786 0.88314 0.91674 0.91480 0.91026 0.90881 0.90655 0.90841 0.94138 0.89654 0.90979 0.88388 0.87168 0.88902 0.89287 0.86914 0.86828 0.91363 0.88341 0.87628 0.84365 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.55 13.90 67.78 0.94 -1.61 16 2 C -0.13 -1.80 5.31 -16.49 -0.09 -1.89 16 3 C -0.12 -1.38 10.12 71.24 0.72 -0.65 16 4 C -0.07 -1.01 5.45 29.85 0.16 -0.85 16 5 C 0.03 0.46 4.80 86.30 0.41 0.88 16 6 N -0.48 -8.72 6.27 -915.72 -5.74 -14.46 16 7 C -0.02 -0.34 7.11 86.23 0.61 0.27 16 8 C 0.08 1.55 1.21 -10.50 -0.01 1.54 16 9 C 0.03 0.44 6.52 86.18 0.56 1.00 16 10 C 0.10 2.09 5.78 86.19 0.50 2.59 16 11 N -0.61 -15.08 3.03 -817.85 -2.47 -17.56 16 12 C 0.54 18.36 7.73 87.66 0.68 19.03 16 13 O -0.56 -23.34 15.36 -3.02 -0.05 -23.39 16 14 C -0.11 -3.93 4.52 71.24 0.32 -3.61 16 15 S -0.18 -8.73 18.55 -56.49 -1.05 -9.77 16 16 C -0.53 -30.17 10.04 67.95 0.68 -29.49 16 17 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 18 C 0.05 2.67 5.50 84.86 0.47 3.13 16 19 N -0.91 -55.05 13.97 21.65 0.30 -54.75 16 20 Si 0.91 44.55 27.74 68.60 1.90 46.45 16 21 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 24 C 0.07 1.17 6.50 86.34 0.56 1.73 16 25 C 0.05 0.75 6.88 72.06 0.50 1.25 16 26 O -0.35 -6.75 10.52 -148.98 -1.57 -8.32 16 27 H 0.10 1.16 7.83 -2.91 -0.02 1.14 16 28 H 0.10 1.19 7.99 -2.91 -0.02 1.16 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.67 7.78 -2.39 -0.02 0.65 16 31 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.07 0.93 7.39 -2.38 -0.02 0.91 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.04 0.68 7.70 -2.39 -0.02 0.66 16 36 H 0.09 1.88 7.27 -2.39 -0.02 1.86 16 37 H 0.07 1.60 7.59 -2.39 -0.02 1.58 16 38 H 0.10 1.25 7.73 -2.38 -0.02 1.23 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.09 2.18 6.91 -2.39 -0.02 2.16 16 42 H 0.11 3.79 7.69 -2.39 -0.02 3.77 16 43 H 0.11 3.83 7.99 -2.39 -0.02 3.82 16 44 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.11 1.82 6.03 -2.39 -0.01 1.80 16 47 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.05 0.94 7.19 -2.39 -0.02 0.92 16 Total: -1.00 -71.64 396.34 -0.76 -72.39 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.89 Total: 16.08 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 7.02 Total: -6.68 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -7.91 Total: -86.77 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -1.61 Total: -31.71 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.05 Total: -9.77 kcal Total: -71.64 -0.76 -72.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673500962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.070 kcal (2) G-P(sol) polarization free energy of solvation -71.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds