Wall clock time and date at job start Sat Apr 11 2020 06:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47307 * 2 1 4 4 S 1.70621 * 124.52028 * 270.02548 * 3 2 1 5 5 C 1.75836 * 91.56108 * 179.97438 * 4 3 2 6 6 C 1.46583 * 125.45511 * 179.97438 * 5 4 3 7 7 O 1.21705 * 119.99474 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00370 * 0.02837 * 6 5 4 9 9 C 1.46495 * 119.99920 * 179.72426 * 8 6 5 10 10 C 1.53004 * 109.47016 * 180.27536 * 9 8 6 11 11 O 1.42898 * 109.47333 * 64.99738 * 10 9 8 12 12 C 1.42900 * 114.00261 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47361 * 179.97438 * 12 11 10 14 14 N 1.46498 * 109.47061 * 65.00157 * 13 12 11 15 15 C 1.46502 * 120.00313 * 270.00142 * 14 13 12 16 16 C 1.36935 * 119.99859 * 90.00169 * 14 13 12 17 17 H 1.07996 * 120.00179 * 20.36969 * 16 14 13 18 18 C 1.38810 * 119.99842 * 200.36448 * 16 14 13 19 19 N 1.31617 * 120.00241 * 14.99120 * 18 16 14 20 20 Si 1.86800 * 119.99900 * 194.99296 * 18 16 14 21 21 H 1.48501 * 109.47367 * 85.00750 * 20 18 16 22 22 H 1.48501 * 109.46974 * 205.00270 * 20 18 16 23 23 H 1.48494 * 109.47428 * 325.00461 * 20 18 16 24 24 C 1.36646 * 109.08114 * 0.24272 * 5 4 3 25 25 C 1.33816 * 124.52601 * 90.00148 * 3 2 1 26 26 C 1.50705 * 122.44332 * 0.04357 * 25 3 2 27 27 H 1.08997 * 109.47084 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46817 * 300.00031 * 1 2 3 29 29 H 1.09004 * 109.46960 * 59.99848 * 1 2 3 30 30 H 1.09002 * 109.46817 * 239.99969 * 2 1 3 31 31 H 1.08997 * 109.47328 * 120.00194 * 2 1 3 32 32 H 0.96999 * 119.99731 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.47314 * 300.27104 * 9 8 6 34 34 H 1.08995 * 109.47446 * 60.27588 * 9 8 6 35 35 H 1.08996 * 109.47295 * 184.99573 * 10 9 8 36 36 H 1.08998 * 109.47066 * 305.00125 * 10 9 8 37 37 H 1.08999 * 109.47528 * 300.00342 * 12 11 10 38 38 H 1.09004 * 109.46988 * 60.00189 * 12 11 10 39 39 H 1.08998 * 109.47527 * 185.00475 * 13 12 11 40 40 H 1.09000 * 109.47396 * 305.00279 * 13 12 11 41 41 H 1.08997 * 109.47190 * 95.09771 * 15 14 13 42 42 H 1.08995 * 109.47238 * 215.10831 * 15 14 13 43 43 H 1.09005 * 109.46599 * 335.10393 * 15 14 13 44 44 H 0.97003 * 120.00372 * 179.97438 * 19 18 16 45 45 H 1.08004 * 123.34675 * 179.75240 * 24 5 4 46 46 H 1.08993 * 109.46892 * 90.00286 * 26 25 3 47 47 H 1.09004 * 109.46310 * 210.00057 * 26 25 3 48 48 H 1.08996 * 109.47557 * 329.99847 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3541 2.3326 -1.4058 5 6 2.8456 3.7237 -0.4492 6 6 3.2999 5.0088 -0.9884 7 8 3.6180 5.9077 -0.2321 8 7 3.3654 5.1949 -2.3216 9 6 3.8137 6.4813 -2.8605 10 6 3.7892 6.4301 -4.3895 11 8 2.4412 6.2808 -4.8396 12 6 2.3061 6.2226 -6.2610 13 6 0.8292 6.0623 -6.6268 14 7 0.0917 7.2596 -6.2162 15 6 -0.5005 7.3323 -4.8782 16 6 -0.0441 8.3109 -7.0830 17 1 0.0864 8.1565 -8.1439 18 6 -0.3497 9.5752 -6.5982 19 7 -0.2208 9.8367 -5.3147 20 14 -0.9439 10.9054 -7.7673 21 1 -2.4114 10.7791 -7.9562 22 1 -0.6313 12.2408 -7.1977 23 1 -0.2613 10.7540 -9.0774 24 6 2.7419 3.4127 0.8774 25 6 2.2852 2.1358 1.1025 26 6 2.0896 1.5796 2.4894 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.1122 4.4783 -2.9243 33 1 3.1492 7.2723 -2.5128 34 1 4.8290 6.6839 -2.5199 35 1 4.2059 7.3539 -4.7906 36 1 4.3832 5.5837 -4.7342 37 1 2.6920 7.1423 -6.7007 38 1 2.8695 5.3721 -6.6450 39 1 0.7341 5.9287 -7.7044 40 1 0.4207 5.1907 -6.1154 41 1 0.1867 7.8434 -4.2039 42 1 -1.4398 7.8832 -4.9260 43 1 -0.6890 6.3241 -4.5091 44 1 -0.4340 10.7203 -4.9759 45 1 2.9910 4.1026 1.6701 46 1 3.0115 1.1037 2.8233 47 1 1.8306 2.3890 3.1721 48 1 1.2852 0.8443 2.4759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676135626.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:39 Heat of formation + Delta-G solvation = -40.283048 kcal Electronic energy + Delta-G solvation = -27052.341536 eV Core-core repulsion = 23234.552250 eV Total energy + Delta-G solvation = -3817.789286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.79931 -38.65492 -37.58726 -35.42780 -34.40837 -34.05996 -31.49742 -30.79430 -29.52086 -27.98942 -27.50447 -25.69160 -24.89055 -23.01391 -22.78704 -22.06087 -20.74988 -20.31594 -18.91745 -18.07158 -16.86621 -16.59288 -16.10730 -16.07395 -15.26483 -15.10143 -14.86336 -14.62809 -14.48102 -14.26480 -13.86885 -13.71381 -13.41047 -13.30549 -13.14043 -12.91016 -12.63300 -12.46896 -12.39636 -12.14531 -11.86896 -11.66261 -11.52280 -11.44664 -11.37319 -10.97423 -10.89989 -10.83865 -10.74717 -10.49755 -10.08073 -10.03319 -9.89946 -9.76386 -9.10702 -9.02220 -8.79542 -8.55942 -8.45839 -6.67824 -5.63109 -3.07405 0.35210 1.28297 1.70685 2.17147 3.12177 3.23513 3.41970 3.47944 3.49341 4.15347 4.35046 4.56424 4.63630 4.71245 4.90119 4.95018 5.05328 5.13808 5.17299 5.28975 5.34818 5.41092 5.47311 5.48104 5.56962 5.58171 5.63987 5.66560 5.70979 5.75986 5.86089 6.00530 6.08678 6.12582 6.20629 6.23957 6.24894 6.42021 6.55039 6.77664 6.96702 7.47014 7.53096 7.78483 7.84975 7.99826 8.17116 8.47052 9.32224 9.96877 10.46499 11.40871 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015413 B = 0.002378 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.251861 B =11774.211284 C =12256.902088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C -0.198 4.198 4 S 0.203 5.797 5 C -0.261 4.261 6 C 0.589 3.411 7 O -0.534 6.534 8 N -0.715 5.715 9 C 0.125 3.875 10 C 0.050 3.950 11 O -0.367 6.367 12 C 0.042 3.958 13 C 0.153 3.847 14 N -0.596 5.596 15 C 0.174 3.826 16 C -0.257 4.257 17 H 0.067 0.933 18 C 0.001 3.999 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.281 1.281 24 C -0.051 4.051 25 C -0.122 4.122 26 C -0.093 4.093 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.400 0.600 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.025 0.975 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.033 0.967 42 H 0.035 0.965 43 H -0.006 1.006 44 H 0.251 0.749 45 H 0.152 0.848 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.632 -21.627 11.101 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.317 4.317 4 S 0.473 5.527 5 C -0.381 4.381 6 C 0.375 3.625 7 O -0.412 6.412 8 N -0.366 5.366 9 C 0.002 3.998 10 C -0.028 4.028 11 O -0.286 6.286 12 C -0.037 4.037 13 C 0.024 3.976 14 N -0.318 5.318 15 C 0.030 3.970 16 C -0.387 4.387 17 H 0.085 0.915 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.084 4.084 25 C -0.135 4.135 26 C -0.152 4.152 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.235 0.765 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.013 0.987 44 H 0.061 0.939 45 H 0.169 0.831 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.552 -21.082 10.237 24.623 hybrid contribution 0.016 0.935 0.434 1.031 sum 7.568 -20.147 10.671 24.022 Atomic orbital electron populations 1.21806 0.93991 1.02130 1.02842 1.20129 0.96441 0.89384 1.03356 1.24061 1.08200 1.02088 0.97394 1.83041 1.60086 1.02222 1.07367 1.24533 1.16085 0.99430 0.98079 1.16920 0.77687 0.85588 0.82319 1.90828 1.49571 1.42752 1.58086 1.45774 1.67879 1.16837 1.06090 1.21454 1.00563 0.85608 0.92165 1.22615 0.86487 1.00522 0.93174 1.88017 1.23625 1.94251 1.22694 1.23531 1.01384 0.98479 0.80352 1.20888 0.88279 0.90714 0.97678 1.43907 1.59460 1.14431 1.14041 1.20688 0.97114 0.93804 0.85435 1.19191 1.43482 0.87128 0.88901 0.91499 1.24970 1.01828 0.96965 0.95982 1.70116 1.51571 1.20779 1.12107 0.86326 0.78855 0.81463 0.80175 1.21549 1.21849 1.20712 1.20597 0.96871 0.95711 0.95241 1.18641 1.04343 0.93982 0.96500 1.20508 1.01994 1.01052 0.91621 0.91891 0.92144 0.92153 0.90676 0.89846 0.76524 0.89764 0.90225 0.91819 0.93777 0.93263 0.95702 0.92343 0.93816 0.94874 0.94605 0.98729 0.93875 0.83061 0.91308 0.91307 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.05 -0.36 5.72 -27.88 -0.16 -0.52 16 3 C -0.20 -1.82 5.53 -35.86 -0.20 -2.01 16 4 S 0.20 2.06 22.10 -107.50 -2.38 -0.31 16 5 C -0.26 -3.39 6.45 -36.79 -0.24 -3.63 16 6 C 0.59 9.16 7.78 -12.90 -0.10 9.06 16 7 O -0.53 -10.00 16.84 5.18 0.09 -9.92 16 8 N -0.71 -10.19 5.50 -61.65 -0.34 -10.53 16 9 C 0.13 1.85 6.06 -4.04 -0.02 1.83 16 10 C 0.05 0.73 6.07 37.16 0.23 0.96 16 11 O -0.37 -6.92 9.85 -35.23 -0.35 -7.26 16 12 C 0.04 0.78 6.28 37.16 0.23 1.01 16 13 C 0.15 3.13 6.11 -4.04 -0.02 3.10 16 14 N -0.60 -15.32 2.89 -181.13 -0.52 -15.84 16 15 C 0.17 4.55 8.62 59.85 0.52 5.06 16 16 C -0.26 -7.15 9.68 -15.06 -0.15 -7.30 16 17 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 18 C 0.00 0.03 5.06 -17.43 -0.09 -0.06 16 19 N -0.90 -26.98 10.67 55.49 0.59 -26.39 16 20 Si 0.90 22.19 29.58 -169.99 -5.03 17.16 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.05 -0.60 9.80 -40.44 -0.40 -1.00 16 25 C -0.12 -1.19 5.78 -106.45 -0.62 -1.80 16 26 C -0.09 -0.65 9.55 36.01 0.34 -0.30 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.40 7.81 -51.93 -0.41 0.00 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.45 7.25 -51.93 -0.38 0.08 16 32 H 0.40 5.09 7.59 -40.82 -0.31 4.78 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 40 H 0.04 0.83 7.86 -51.93 -0.41 0.43 16 41 H 0.03 0.95 7.40 -51.93 -0.38 0.56 16 42 H 0.04 1.00 7.21 -51.93 -0.37 0.62 16 43 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 44 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 48 H 0.07 0.40 6.86 -51.93 -0.36 0.04 16 LS Contribution 408.76 15.07 6.16 6.16 Total: -1.00 -33.73 408.76 -10.14 -43.86 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -8.06 Total: -0.75 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -0.30 Total: 3.82 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.27 Total: -52.76 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.26 Total: -17.18 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.38 Total: -0.31 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.73 -10.14 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676135626.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.582 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds