Wall clock time and date at job start Sat Apr 11 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47307 * 2 1 4 4 S 1.70621 * 124.52028 * 270.02548 * 3 2 1 5 5 C 1.75836 * 91.56108 * 179.97438 * 4 3 2 6 6 C 1.46583 * 125.45511 * 179.97438 * 5 4 3 7 7 O 1.21705 * 119.99474 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00370 * 0.02837 * 6 5 4 9 9 C 1.46495 * 119.99920 * 179.72426 * 8 6 5 10 10 C 1.53004 * 109.47016 * 180.27536 * 9 8 6 11 11 O 1.42898 * 109.47333 * 64.99738 * 10 9 8 12 12 C 1.42900 * 114.00261 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47361 * 179.97438 * 12 11 10 14 14 N 1.46498 * 109.47061 * 65.00157 * 13 12 11 15 15 C 1.46502 * 120.00313 * 270.00142 * 14 13 12 16 16 C 1.36935 * 119.99859 * 90.00169 * 14 13 12 17 17 H 1.07996 * 120.00179 * 20.36969 * 16 14 13 18 18 C 1.38810 * 119.99842 * 200.36448 * 16 14 13 19 19 N 1.31617 * 120.00241 * 14.99120 * 18 16 14 20 20 Si 1.86800 * 119.99900 * 194.99296 * 18 16 14 21 21 H 1.48501 * 109.47367 * 85.00750 * 20 18 16 22 22 H 1.48501 * 109.46974 * 205.00270 * 20 18 16 23 23 H 1.48494 * 109.47428 * 325.00461 * 20 18 16 24 24 C 1.36646 * 109.08114 * 0.24272 * 5 4 3 25 25 C 1.33816 * 124.52601 * 90.00148 * 3 2 1 26 26 C 1.50705 * 122.44332 * 0.04357 * 25 3 2 27 27 H 1.08997 * 109.47084 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46817 * 300.00031 * 1 2 3 29 29 H 1.09004 * 109.46960 * 59.99848 * 1 2 3 30 30 H 1.09002 * 109.46817 * 239.99969 * 2 1 3 31 31 H 1.08997 * 109.47328 * 120.00194 * 2 1 3 32 32 H 0.96999 * 119.99731 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.47314 * 300.27104 * 9 8 6 34 34 H 1.08995 * 109.47446 * 60.27588 * 9 8 6 35 35 H 1.08996 * 109.47295 * 184.99573 * 10 9 8 36 36 H 1.08998 * 109.47066 * 305.00125 * 10 9 8 37 37 H 1.08999 * 109.47528 * 300.00342 * 12 11 10 38 38 H 1.09004 * 109.46988 * 60.00189 * 12 11 10 39 39 H 1.08998 * 109.47527 * 185.00475 * 13 12 11 40 40 H 1.09000 * 109.47396 * 305.00279 * 13 12 11 41 41 H 1.08997 * 109.47190 * 95.09771 * 15 14 13 42 42 H 1.08995 * 109.47238 * 215.10831 * 15 14 13 43 43 H 1.09005 * 109.46599 * 335.10393 * 15 14 13 44 44 H 0.97003 * 120.00372 * 179.97438 * 19 18 16 45 45 H 1.08004 * 123.34675 * 179.75240 * 24 5 4 46 46 H 1.08993 * 109.46892 * 90.00286 * 26 25 3 47 47 H 1.09004 * 109.46310 * 210.00057 * 26 25 3 48 48 H 1.08996 * 109.47557 * 329.99847 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3541 2.3326 -1.4058 5 6 2.8456 3.7237 -0.4492 6 6 3.2999 5.0088 -0.9884 7 8 3.6180 5.9077 -0.2321 8 7 3.3654 5.1949 -2.3216 9 6 3.8137 6.4813 -2.8605 10 6 3.7892 6.4301 -4.3895 11 8 2.4412 6.2808 -4.8396 12 6 2.3061 6.2226 -6.2610 13 6 0.8292 6.0623 -6.6268 14 7 0.0917 7.2596 -6.2162 15 6 -0.5005 7.3323 -4.8782 16 6 -0.0441 8.3109 -7.0830 17 1 0.0864 8.1565 -8.1439 18 6 -0.3497 9.5752 -6.5982 19 7 -0.2208 9.8367 -5.3147 20 14 -0.9439 10.9054 -7.7673 21 1 -2.4114 10.7791 -7.9562 22 1 -0.6313 12.2408 -7.1977 23 1 -0.2613 10.7540 -9.0774 24 6 2.7419 3.4127 0.8774 25 6 2.2852 2.1358 1.1025 26 6 2.0896 1.5796 2.4894 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.1122 4.4783 -2.9243 33 1 3.1492 7.2723 -2.5128 34 1 4.8290 6.6839 -2.5199 35 1 4.2059 7.3539 -4.7906 36 1 4.3832 5.5837 -4.7342 37 1 2.6920 7.1423 -6.7007 38 1 2.8695 5.3721 -6.6450 39 1 0.7341 5.9287 -7.7044 40 1 0.4207 5.1907 -6.1154 41 1 0.1867 7.8434 -4.2039 42 1 -1.4398 7.8832 -4.9260 43 1 -0.6890 6.3241 -4.5091 44 1 -0.4340 10.7203 -4.9759 45 1 2.9910 4.1026 1.6701 46 1 3.0115 1.1037 2.8233 47 1 1.8306 2.3890 3.1721 48 1 1.2852 0.8443 2.4759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676135626.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:38 Heat of formation + Delta-G solvation = -61.432911 kcal Electronic energy + Delta-G solvation = -27053.258663 eV Core-core repulsion = 23234.552250 eV Total energy + Delta-G solvation = -3818.706413 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.93899 -39.53467 -38.98973 -37.23237 -35.79256 -34.72991 -33.42310 -31.74069 -30.74807 -29.47234 -28.28442 -27.82053 -25.81574 -24.82189 -23.58258 -23.07916 -22.14932 -21.82815 -19.77604 -18.99949 -18.77361 -17.72644 -17.49845 -17.20389 -16.83348 -16.35864 -16.28976 -15.69228 -15.43992 -15.25132 -15.22007 -15.09007 -14.86766 -14.56859 -14.13363 -14.02834 -13.85320 -13.44473 -13.18502 -13.17181 -13.02930 -13.00501 -12.72019 -12.62848 -12.54598 -12.50721 -12.34367 -12.20896 -12.06032 -12.01320 -11.78762 -11.69161 -11.64368 -11.29309 -10.61109 -10.40521 -10.32314 -9.65590 -9.33851 -8.76310 -7.77761 -5.23858 -0.54299 0.44337 0.89190 1.30156 1.46251 1.48526 1.56223 1.99685 2.12412 2.53079 2.84019 3.34601 3.67726 3.75034 3.76343 3.95120 4.09938 4.13597 4.19659 4.40675 4.42438 4.45281 4.50176 4.51094 4.57898 4.60831 4.68014 4.80548 4.83370 4.86271 4.90748 4.92677 4.99596 5.01585 5.06114 5.13248 5.20019 5.24734 5.31760 5.36137 5.41959 5.54635 5.66369 5.81279 6.33558 6.34382 6.44759 7.00599 7.18217 7.92594 8.37725 9.25325 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015413 B = 0.002378 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.251861 B =11774.211284 C =12256.902088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C -0.186 4.186 4 S 0.227 5.773 5 C -0.300 4.300 6 C 0.585 3.415 7 O -0.579 6.579 8 N -0.708 5.708 9 C 0.129 3.871 10 C 0.053 3.947 11 O -0.395 6.395 12 C 0.051 3.949 13 C 0.144 3.856 14 N -0.613 5.613 15 C 0.195 3.805 16 C -0.259 4.259 17 H 0.077 0.923 18 C -0.059 4.059 19 N -0.937 5.937 20 Si 0.967 3.033 21 H -0.287 1.287 22 H -0.300 1.300 23 H -0.266 1.266 24 C -0.052 4.052 25 C -0.134 4.134 26 C -0.091 4.091 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.409 0.591 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.023 0.977 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.061 0.939 41 H -0.002 1.002 42 H 0.007 0.993 43 H 0.019 0.981 44 H 0.244 0.756 45 H 0.145 0.855 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.903 -24.770 10.062 27.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.094 4.094 3 C -0.306 4.306 4 S 0.498 5.502 5 C -0.420 4.420 6 C 0.373 3.627 7 O -0.461 6.461 8 N -0.359 5.359 9 C 0.006 3.994 10 C -0.024 4.024 11 O -0.315 6.315 12 C -0.028 4.028 13 C 0.018 3.982 14 N -0.336 5.336 15 C 0.050 3.950 16 C -0.389 4.389 17 H 0.095 0.905 18 C -0.254 4.254 19 N -0.584 5.584 20 Si 0.796 3.204 21 H -0.214 1.214 22 H -0.227 1.227 23 H -0.190 1.190 24 C -0.086 4.086 25 C -0.146 4.146 26 C -0.150 4.150 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.245 0.755 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.041 0.959 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.017 0.983 42 H 0.026 0.974 43 H 0.038 0.962 44 H 0.053 0.947 45 H 0.162 0.838 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.839 -24.283 9.139 27.104 hybrid contribution -0.064 1.747 0.771 1.911 sum 7.775 -22.536 9.910 25.817 Atomic orbital electron populations 1.21813 0.93667 1.03147 1.02128 1.20297 0.96554 0.87618 1.04923 1.24522 1.06332 1.03123 0.96666 1.82848 1.59440 1.00661 1.07295 1.24384 1.18778 0.99689 0.99183 1.17326 0.76907 0.86156 0.82296 1.90787 1.51762 1.44503 1.59027 1.45709 1.67440 1.16722 1.05993 1.21365 1.00532 0.84960 0.92550 1.22718 0.85157 1.01950 0.92561 1.87972 1.26145 1.94484 1.22896 1.23282 1.00103 0.99075 0.80353 1.21159 0.89140 0.89013 0.98882 1.44131 1.60624 1.15470 1.13351 1.20305 0.94866 0.94174 0.85640 1.19588 1.41977 0.87684 0.89699 0.90540 1.25772 1.02828 0.99363 0.97435 1.70310 1.53373 1.20761 1.13991 0.85282 0.78198 0.78231 0.78724 1.21402 1.22703 1.19043 1.20791 0.96345 0.96664 0.94809 1.18860 1.04388 0.93155 0.98184 1.20573 1.03174 1.01404 0.89847 0.90051 0.92483 0.93290 0.89459 0.87945 0.75470 0.93529 0.88519 0.92133 0.90016 0.95872 0.91043 0.90708 0.92080 0.98320 0.97444 0.96211 0.94728 0.83767 0.90070 0.91291 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.89 71.98 0.71 -0.79 16 2 C -0.05 -0.55 5.72 29.85 0.17 -0.38 16 3 C -0.19 -3.04 5.53 24.68 0.14 -2.91 16 4 S 0.23 4.32 22.10 -56.49 -1.25 3.07 16 5 C -0.30 -7.91 6.45 24.08 0.16 -7.75 16 6 C 0.59 18.91 7.78 86.42 0.67 19.58 16 7 O -0.58 -23.00 16.84 -4.37 -0.07 -23.07 16 8 N -0.71 -20.38 5.50 -467.19 -2.57 -22.95 16 9 C 0.13 3.92 6.06 86.38 0.52 4.44 16 10 C 0.05 1.51 6.07 71.98 0.44 1.95 16 11 O -0.40 -14.56 9.85 -148.98 -1.47 -16.03 16 12 C 0.05 1.77 6.28 71.98 0.45 2.22 16 13 C 0.14 5.61 6.11 86.38 0.53 6.14 16 14 N -0.61 -31.31 2.89 -726.96 -2.10 -33.41 16 15 C 0.20 10.40 8.62 127.77 1.10 11.50 16 16 C -0.26 -14.34 9.68 84.03 0.81 -13.52 16 17 H 0.08 4.01 7.86 -2.91 -0.02 3.98 16 18 C -0.06 -3.41 5.06 84.86 0.43 -2.98 16 19 N -0.94 -57.97 10.67 21.65 0.23 -57.73 16 20 Si 0.97 46.09 29.58 68.60 2.03 48.12 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 C -0.05 -1.23 9.80 21.71 0.21 -1.02 16 25 C -0.13 -2.43 5.78 -21.05 -0.12 -2.55 16 26 C -0.09 -1.08 9.55 71.24 0.68 -0.40 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.62 7.81 -2.39 -0.02 0.60 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.71 7.25 -2.39 -0.02 0.69 16 32 H 0.41 10.08 7.59 -92.71 -0.70 9.38 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 2.65 8.03 -2.39 -0.02 2.63 16 40 H 0.06 2.16 7.86 -2.39 -0.02 2.14 16 41 H 0.00 -0.09 7.40 -2.39 -0.02 -0.11 16 42 H 0.01 0.40 7.21 -2.39 -0.02 0.38 16 43 H 0.02 0.92 7.84 -2.38 -0.02 0.90 16 44 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 45 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 46 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 47 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 48 H 0.08 0.73 6.86 -2.39 -0.02 0.72 16 Total: -1.00 -75.56 408.76 1.95 -73.61 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.24 Total: 14.86 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 6.90 Total: 13.52 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -4.44 Total: -114.09 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.54 Total: -39.10 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.25 Total: 3.07 kcal Total: -75.56 1.95 -73.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676135626.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.179 kcal (2) G-P(sol) polarization free energy of solvation -75.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds