Wall clock time and date at job start Sat Apr 11 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.46841 * 2 1 4 4 C 1.33001 * 119.99744 * 125.02585 * 3 2 1 5 5 C 1.50701 * 119.99623 * 185.90053 * 4 3 2 6 6 C 1.47094 * 119.99998 * 5.90576 * 4 3 2 7 7 O 1.21611 * 120.00381 * 260.15178 * 6 4 3 8 8 N 1.34779 * 120.00294 * 80.15464 * 6 4 3 9 9 C 1.46508 * 119.99762 * 4.51346 * 8 6 4 10 10 C 1.46500 * 120.00434 * 184.51586 * 8 6 4 11 11 C 1.52995 * 109.47183 * 272.24843 * 10 8 6 12 12 H 1.09001 * 112.73910 * 316.37251 * 11 10 8 13 13 C 1.53503 * 113.46717 * 87.18803 * 11 10 8 14 14 C 1.53236 * 83.42873 * 140.68005 * 13 11 10 15 15 N 1.47071 * 113.46625 * 185.62322 * 11 10 8 16 16 C 1.34777 * 136.05827 * 38.06689 * 15 11 10 17 17 O 1.21279 * 119.99612 * 354.74563 * 16 15 11 18 18 C 1.50692 * 119.99934 * 174.74290 * 16 15 11 19 19 S 1.81005 * 109.47214 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99856 * 180.02562 * 19 18 16 21 21 H 1.07991 * 120.00468 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99420 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00197 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99684 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47034 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47322 * 120.00080 * 24 22 20 27 27 H 1.48498 * 109.46616 * 240.00098 * 24 22 20 28 28 H 1.08995 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46870 * 299.99935 * 1 2 3 30 30 H 1.09003 * 109.46903 * 59.99737 * 1 2 3 31 31 H 1.08994 * 109.46951 * 240.00241 * 2 1 3 32 32 H 1.08994 * 109.46747 * 119.99661 * 2 1 3 33 33 H 1.07995 * 120.00286 * 305.02189 * 3 2 1 34 34 H 1.09001 * 109.47522 * 275.08097 * 5 4 3 35 35 H 1.08996 * 109.47097 * 35.08601 * 5 4 3 36 36 H 1.09003 * 109.46711 * 155.08715 * 5 4 3 37 37 H 1.08997 * 109.47317 * 265.94919 * 9 8 6 38 38 H 1.08997 * 109.46796 * 25.95139 * 9 8 6 39 39 H 1.08994 * 109.46800 * 145.94955 * 9 8 6 40 40 H 1.09004 * 109.47100 * 152.24345 * 10 8 6 41 41 H 1.08999 * 109.46670 * 32.25091 * 10 8 6 42 42 H 1.09003 * 114.20474 * 254.43473 * 13 11 10 43 43 H 1.09004 * 114.20559 * 27.06242 * 13 11 10 44 44 H 1.09007 * 113.38293 * 219.29615 * 14 13 11 45 45 H 1.08996 * 113.47269 * 88.93011 * 14 13 11 46 46 H 1.09002 * 109.46972 * 60.00363 * 18 16 15 47 47 H 1.08992 * 109.47655 * 300.00314 * 18 16 15 48 48 H 0.96996 * 119.99818 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8773 1.8274 0.9432 5 6 3.2758 3.2786 1.0231 6 6 3.4227 0.8607 1.9084 7 8 2.9430 0.7772 3.0228 8 7 4.4543 0.0673 1.5578 9 6 5.0965 0.2351 0.2517 10 6 4.9334 -0.9630 2.4826 11 6 5.9838 -0.3604 3.4176 12 1 6.6964 0.2778 2.8951 13 6 5.3843 0.2899 4.6722 14 6 6.6002 -0.3364 5.3633 15 7 6.6208 -1.3509 4.2986 16 6 7.0356 -2.6280 4.1829 17 8 6.8166 -3.2466 3.1630 18 6 7.7714 -3.2873 5.3208 19 16 8.1906 -4.9877 4.8636 20 6 9.0174 -5.5042 6.3314 21 1 9.1278 -4.8188 7.1586 22 6 9.5267 -6.7920 6.4243 23 7 9.3916 -7.6276 5.4162 24 14 10.4026 -7.3399 7.9807 25 1 10.4210 -6.2220 8.9579 26 1 9.6872 -8.5005 8.5689 27 1 11.7966 -7.7324 7.6520 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7063 2.1089 -0.7659 34 1 4.1070 3.4651 0.3431 35 1 2.4287 3.9040 0.7415 36 1 3.5800 3.5162 2.0424 37 1 4.6452 -0.4500 -0.4659 38 1 4.9610 1.2611 -0.0906 39 1 6.1612 0.0193 0.3400 40 1 5.3778 -1.7814 1.9162 41 1 4.0970 -1.3404 3.0708 42 1 5.3889 1.3798 4.6563 43 1 4.4281 -0.1325 4.9811 44 1 6.3749 -0.7455 6.3482 45 1 7.4787 0.3088 5.3651 46 1 7.1371 -3.2957 6.2072 47 1 8.6849 -2.7320 5.5330 48 1 8.9365 -7.3432 4.6083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001684061691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:07 Heat of formation + Delta-G solvation = -25.156885 kcal Electronic energy + Delta-G solvation = -27340.417422 eV Core-core repulsion = 23523.284056 eV Total energy + Delta-G solvation = -3817.133367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.85934 -39.87761 -37.55742 -36.11249 -35.67656 -32.65710 -32.53365 -30.93400 -29.20270 -28.20643 -27.47458 -26.78255 -24.85240 -24.30140 -22.80651 -22.14698 -21.51035 -19.00779 -18.54153 -18.19744 -16.97858 -16.73184 -16.44352 -16.17796 -15.59390 -15.44054 -14.81452 -14.46041 -14.23297 -14.08519 -13.93585 -13.84097 -13.52570 -13.45021 -13.20890 -13.09462 -12.85092 -12.67291 -12.64229 -12.58548 -12.36656 -12.34679 -12.09366 -11.88649 -11.74832 -11.55040 -11.44516 -11.36344 -10.90317 -10.76670 -10.20917 -10.11765 -9.59775 -9.43021 -9.28987 -9.02680 -9.00542 -8.58070 -8.22951 -6.67873 -6.62961 -4.00695 1.36314 2.32328 2.53745 2.88497 2.99328 3.32642 3.40298 3.43008 3.54636 4.14273 4.22337 4.27333 4.38472 4.66074 4.67505 4.77746 4.79621 4.91786 4.93315 4.95327 4.97020 5.06146 5.13633 5.17194 5.21876 5.26340 5.27681 5.37261 5.40046 5.40508 5.45296 5.53250 5.58241 5.68878 5.70822 5.72541 5.77744 5.79809 5.92517 5.99166 6.03293 6.09390 6.19605 6.31733 7.08185 7.80513 7.89126 7.93245 8.44073 8.49800 9.26480 10.81164 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.002130 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.973156 B =13140.775505 C =13695.747525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.111 4.111 4 C -0.166 4.166 5 C -0.104 4.104 6 C 0.558 3.442 7 O -0.529 6.529 8 N -0.608 5.608 9 C 0.079 3.921 10 C 0.110 3.890 11 C 0.121 3.879 12 H 0.089 0.911 13 C -0.138 4.138 14 C 0.098 3.902 15 N -0.646 5.646 16 C 0.562 3.438 17 O -0.517 6.517 18 C -0.122 4.122 19 S -0.117 6.117 20 C -0.606 4.606 21 H 0.066 0.934 22 C 0.035 3.965 23 N -0.885 5.885 24 Si 1.090 2.910 25 H -0.288 1.288 26 H -0.282 1.282 27 H -0.283 1.283 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.099 24.730 -10.735 29.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.130 4.130 4 C -0.169 4.169 5 C -0.161 4.161 6 C 0.346 3.654 7 O -0.406 6.406 8 N -0.341 5.341 9 C -0.064 4.064 10 C -0.013 4.013 11 C 0.016 3.984 12 H 0.106 0.894 13 C -0.176 4.176 14 C -0.025 4.025 15 N -0.385 5.385 16 C 0.351 3.649 17 O -0.391 6.391 18 C -0.273 4.273 19 S 0.110 5.890 20 C -0.754 4.754 21 H 0.085 0.915 22 C -0.176 4.176 23 N -0.519 5.519 24 Si 0.917 3.083 25 H -0.214 1.214 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.119 0.881 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.815 22.211 -10.981 27.895 hybrid contribution -0.240 2.114 0.552 2.198 sum -13.054 24.324 -10.429 29.510 Atomic orbital electron populations 1.21668 0.94351 1.02132 1.02044 1.20756 0.96838 0.93854 1.02852 1.23349 0.95894 0.97786 0.95980 1.21484 1.01749 0.96439 0.97186 1.20669 1.01920 0.90515 1.02985 1.18537 0.79248 0.80375 0.87249 1.90816 1.59660 1.68792 1.21314 1.47841 1.33191 1.35375 1.17713 1.21822 0.98428 1.02232 0.83919 1.21772 0.97490 0.89848 0.92203 1.22985 0.93448 0.88462 0.93513 0.89351 1.23413 0.98354 1.00671 0.95149 1.22916 0.97881 0.88445 0.93291 1.49743 1.62667 1.10189 1.15938 1.19909 0.77348 0.78873 0.88731 1.90680 1.55423 1.61984 1.31059 1.23254 1.02069 1.02759 0.99228 1.84781 1.74292 1.04258 1.25699 1.23754 1.45772 1.04033 1.01858 0.91535 1.26069 0.95967 0.91781 1.03755 1.70737 1.38573 1.37185 1.05454 0.83243 0.76287 0.75569 0.73234 1.21397 1.20853 1.20880 0.92212 0.92416 0.92484 0.90531 0.91398 0.85735 0.91107 0.90976 0.91315 0.92329 0.90749 0.90840 0.88362 0.89399 0.89872 0.88065 0.90157 0.89961 0.89097 0.89085 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.90 37.16 0.37 -0.64 16 2 C -0.11 -0.82 6.19 -27.88 -0.17 -1.00 16 3 C -0.11 -0.77 9.15 -36.13 -0.33 -1.10 16 4 C -0.17 -1.34 3.85 -102.85 -0.40 -1.74 16 5 C -0.10 -0.61 10.01 36.01 0.36 -0.25 16 6 C 0.56 6.14 5.06 -12.67 -0.06 6.07 16 7 O -0.53 -7.61 15.45 5.27 0.08 -7.53 16 8 N -0.61 -6.19 2.88 -182.98 -0.53 -6.72 16 9 C 0.08 0.57 10.21 59.85 0.61 1.18 16 10 C 0.11 1.40 5.16 -4.04 -0.02 1.38 16 11 C 0.12 1.47 4.29 -72.39 -0.31 1.16 16 12 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 13 C -0.14 -1.48 6.96 -26.35 -0.18 -1.66 16 14 C 0.10 1.08 8.41 -8.64 -0.07 1.01 16 15 N -0.65 -9.64 3.57 -177.59 -0.63 -10.27 16 16 C 0.56 10.99 8.02 -10.99 -0.09 10.90 16 17 O -0.52 -11.72 15.20 5.56 0.08 -11.63 16 18 C -0.12 -2.59 5.99 36.00 0.22 -2.37 16 19 S -0.12 -3.19 19.60 -107.50 -2.11 -5.30 16 20 C -0.61 -17.71 9.50 30.94 0.29 -17.41 16 21 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 22 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 23 N -0.89 -27.75 13.67 55.49 0.76 -26.99 16 24 Si 1.09 25.31 29.92 -169.99 -5.09 20.23 16 25 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.70 6.35 -51.93 -0.33 0.37 16 33 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 36 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.41 6.81 -51.93 -0.35 0.05 16 39 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 40 H 0.10 1.43 6.89 -51.93 -0.36 1.07 16 41 H 0.09 1.28 7.28 -51.93 -0.38 0.90 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 1.25 7.68 -51.93 -0.40 0.85 16 44 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.83 8.14 -51.91 -0.42 1.41 16 47 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 48 H 0.28 8.90 7.12 -40.82 -0.29 8.61 16 LS Contribution 409.76 15.07 6.18 6.18 Total: -1.00 -36.36 409.76 -9.21 -45.57 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -8.07 Total: 0.02 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 0.11 Total: -3.54 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.40 Total: -43.98 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.17 Total: -19.17 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.09 Total: 20.23 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.11 Total: -5.30 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.36 -9.21 -45.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684061691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.410 kcal (2) G-P(sol) polarization free energy of solvation -36.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds