Wall clock time and date at job start Sat Apr 11 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.46841 * 2 1 4 4 C 1.33001 * 119.99744 * 125.02585 * 3 2 1 5 5 C 1.50701 * 119.99623 * 185.90053 * 4 3 2 6 6 C 1.47094 * 119.99998 * 5.90576 * 4 3 2 7 7 O 1.21611 * 120.00381 * 260.15178 * 6 4 3 8 8 N 1.34779 * 120.00294 * 80.15464 * 6 4 3 9 9 C 1.46508 * 119.99762 * 4.51346 * 8 6 4 10 10 C 1.46500 * 120.00434 * 184.51586 * 8 6 4 11 11 C 1.52995 * 109.47183 * 272.24843 * 10 8 6 12 12 H 1.09001 * 112.73910 * 316.37251 * 11 10 8 13 13 C 1.53503 * 113.46717 * 87.18803 * 11 10 8 14 14 C 1.53236 * 83.42873 * 140.68005 * 13 11 10 15 15 N 1.47071 * 113.46625 * 185.62322 * 11 10 8 16 16 C 1.34777 * 136.05827 * 38.06689 * 15 11 10 17 17 O 1.21279 * 119.99612 * 354.74563 * 16 15 11 18 18 C 1.50692 * 119.99934 * 174.74290 * 16 15 11 19 19 S 1.81005 * 109.47214 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99856 * 180.02562 * 19 18 16 21 21 H 1.07991 * 120.00468 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99420 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00197 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99684 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47034 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47322 * 120.00080 * 24 22 20 27 27 H 1.48498 * 109.46616 * 240.00098 * 24 22 20 28 28 H 1.08995 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46870 * 299.99935 * 1 2 3 30 30 H 1.09003 * 109.46903 * 59.99737 * 1 2 3 31 31 H 1.08994 * 109.46951 * 240.00241 * 2 1 3 32 32 H 1.08994 * 109.46747 * 119.99661 * 2 1 3 33 33 H 1.07995 * 120.00286 * 305.02189 * 3 2 1 34 34 H 1.09001 * 109.47522 * 275.08097 * 5 4 3 35 35 H 1.08996 * 109.47097 * 35.08601 * 5 4 3 36 36 H 1.09003 * 109.46711 * 155.08715 * 5 4 3 37 37 H 1.08997 * 109.47317 * 265.94919 * 9 8 6 38 38 H 1.08997 * 109.46796 * 25.95139 * 9 8 6 39 39 H 1.08994 * 109.46800 * 145.94955 * 9 8 6 40 40 H 1.09004 * 109.47100 * 152.24345 * 10 8 6 41 41 H 1.08999 * 109.46670 * 32.25091 * 10 8 6 42 42 H 1.09003 * 114.20474 * 254.43473 * 13 11 10 43 43 H 1.09004 * 114.20559 * 27.06242 * 13 11 10 44 44 H 1.09007 * 113.38293 * 219.29615 * 14 13 11 45 45 H 1.08996 * 113.47269 * 88.93011 * 14 13 11 46 46 H 1.09002 * 109.46972 * 60.00363 * 18 16 15 47 47 H 1.08992 * 109.47655 * 300.00314 * 18 16 15 48 48 H 0.96996 * 119.99818 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8773 1.8274 0.9432 5 6 3.2758 3.2786 1.0231 6 6 3.4227 0.8607 1.9084 7 8 2.9430 0.7772 3.0228 8 7 4.4543 0.0673 1.5578 9 6 5.0965 0.2351 0.2517 10 6 4.9334 -0.9630 2.4826 11 6 5.9838 -0.3604 3.4176 12 1 6.6964 0.2778 2.8951 13 6 5.3843 0.2899 4.6722 14 6 6.6002 -0.3364 5.3633 15 7 6.6208 -1.3509 4.2986 16 6 7.0356 -2.6280 4.1829 17 8 6.8166 -3.2466 3.1630 18 6 7.7714 -3.2873 5.3208 19 16 8.1906 -4.9877 4.8636 20 6 9.0174 -5.5042 6.3314 21 1 9.1278 -4.8188 7.1586 22 6 9.5267 -6.7920 6.4243 23 7 9.3916 -7.6276 5.4162 24 14 10.4026 -7.3399 7.9807 25 1 10.4210 -6.2220 8.9579 26 1 9.6872 -8.5005 8.5689 27 1 11.7966 -7.7324 7.6520 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7063 2.1089 -0.7659 34 1 4.1070 3.4651 0.3431 35 1 2.4287 3.9040 0.7415 36 1 3.5800 3.5162 2.0424 37 1 4.6452 -0.4500 -0.4659 38 1 4.9610 1.2611 -0.0906 39 1 6.1612 0.0193 0.3400 40 1 5.3778 -1.7814 1.9162 41 1 4.0970 -1.3404 3.0708 42 1 5.3889 1.3798 4.6563 43 1 4.4281 -0.1325 4.9811 44 1 6.3749 -0.7455 6.3482 45 1 7.4787 0.3088 5.3651 46 1 7.1371 -3.2957 6.2072 47 1 8.6849 -2.7320 5.5330 48 1 8.9365 -7.3432 4.6083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001684061691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:06 Heat of formation + Delta-G solvation = -48.230882 kcal Electronic energy + Delta-G solvation = -27341.417986 eV Core-core repulsion = 23523.284056 eV Total energy + Delta-G solvation = -3818.133930 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.90071 -40.88598 -38.97473 -36.79621 -36.55182 -34.78078 -33.24556 -32.36706 -30.18004 -29.61497 -27.99760 -27.50133 -27.09064 -25.19125 -23.52457 -23.21751 -22.34005 -20.67335 -19.88504 -19.29664 -18.23855 -17.77622 -17.41543 -17.29086 -16.74889 -16.57003 -16.07847 -15.79334 -15.72310 -15.30837 -15.09153 -14.61643 -14.57088 -14.44212 -14.16322 -13.98077 -13.91191 -13.85333 -13.77490 -13.70651 -13.44797 -13.26177 -13.16246 -12.92475 -12.88243 -12.77814 -12.55474 -12.05758 -11.94945 -11.94438 -11.74410 -11.60438 -11.14270 -11.04245 -10.85953 -10.37204 -10.02634 -9.85902 -9.68391 -8.96053 -8.91343 -6.31480 0.77609 1.03839 1.41536 1.48121 1.53080 1.60213 1.71644 1.77894 2.13874 2.30343 2.99257 3.02481 3.25983 3.49206 3.52178 3.75892 3.79732 3.91231 3.97331 4.07072 4.08090 4.21352 4.28544 4.33834 4.34395 4.44773 4.46981 4.49011 4.52743 4.54544 4.64930 4.75700 4.79349 4.85036 4.87296 4.87910 4.95768 5.04761 5.17118 5.18015 5.24567 5.34491 5.45652 5.61493 5.65317 6.11953 6.28288 6.50469 6.95789 7.02837 7.05229 8.47532 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.002130 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.973156 B =13140.775505 C =13695.747525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.098 4.098 4 C -0.180 4.180 5 C -0.099 4.099 6 C 0.555 3.445 7 O -0.572 6.572 8 N -0.604 5.604 9 C 0.075 3.925 10 C 0.118 3.882 11 C 0.120 3.880 12 H 0.112 0.888 13 C -0.122 4.122 14 C 0.099 3.901 15 N -0.646 5.646 16 C 0.560 3.440 17 O -0.561 6.561 18 C -0.099 4.099 19 S -0.190 6.190 20 C -0.613 4.613 21 H 0.073 0.927 22 C -0.019 4.019 23 N -0.912 5.912 24 Si 1.142 2.858 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.273 1.273 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.034 0.966 33 H 0.157 0.843 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.115 0.885 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.834 27.991 -10.572 32.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.117 4.117 4 C -0.183 4.183 5 C -0.156 4.156 6 C 0.345 3.655 7 O -0.451 6.451 8 N -0.337 5.337 9 C -0.067 4.067 10 C -0.006 4.006 11 C 0.016 3.984 12 H 0.130 0.870 13 C -0.160 4.160 14 C -0.023 4.023 15 N -0.383 5.383 16 C 0.349 3.651 17 O -0.439 6.439 18 C -0.251 4.251 19 S 0.036 5.964 20 C -0.761 4.761 21 H 0.091 0.909 22 C -0.222 4.222 23 N -0.547 5.547 24 Si 0.960 3.040 25 H -0.188 1.188 26 H -0.199 1.199 27 H -0.198 1.198 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.052 0.948 33 H 0.175 0.825 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.127 0.873 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.133 0.867 46 H 0.121 0.879 47 H 0.125 0.875 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.565 25.549 -10.836 30.464 hybrid contribution -0.443 1.217 0.433 1.365 sum -13.008 26.766 -10.403 31.525 Atomic orbital electron populations 1.21655 0.93675 1.02139 1.02519 1.20777 0.97467 0.94658 1.01742 1.23556 0.94640 0.97429 0.96038 1.21536 1.02813 0.96947 0.96965 1.20699 1.03267 0.88804 1.02840 1.19111 0.78669 0.80404 0.87275 1.90787 1.60858 1.70130 1.23349 1.47887 1.33243 1.34331 1.18230 1.22023 0.98285 1.03959 0.82408 1.21450 0.96589 0.90247 0.92340 1.23274 0.93541 0.87571 0.93996 0.86997 1.23254 0.97242 1.01840 0.93686 1.23269 0.99153 0.87254 0.92607 1.49762 1.60815 1.09365 1.18383 1.19557 0.77590 0.80383 0.87599 1.90662 1.57388 1.63565 1.32301 1.23115 1.03265 0.98406 1.00271 1.84993 1.74712 1.10002 1.26651 1.24066 1.45407 1.04473 1.02119 0.90852 1.27872 0.96098 0.92090 1.06178 1.70859 1.40112 1.37958 1.05817 0.82643 0.75490 0.76222 0.69631 1.18798 1.19927 1.19792 0.92563 0.93528 0.90309 0.89394 0.94760 0.82531 0.89097 0.89479 0.92515 0.91983 0.88158 0.90635 0.90633 0.92167 0.87306 0.90028 0.89406 0.86725 0.87914 0.87451 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.90 71.98 0.71 -1.14 16 2 C -0.11 -1.62 6.19 29.85 0.18 -1.43 16 3 C -0.10 -1.13 9.15 24.52 0.22 -0.90 16 4 C -0.18 -2.59 3.85 -18.70 -0.07 -2.66 16 5 C -0.10 -0.88 10.01 71.24 0.71 -0.17 16 6 C 0.56 12.06 5.06 86.57 0.44 12.50 16 7 O -0.57 -16.85 15.45 -4.07 -0.06 -16.91 16 8 N -0.60 -12.22 2.88 -851.08 -2.45 -14.66 16 9 C 0.08 0.99 10.21 127.77 1.30 2.30 16 10 C 0.12 3.13 5.16 86.38 0.45 3.58 16 11 C 0.12 2.80 4.29 41.79 0.18 2.98 16 12 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.12 -2.42 6.96 30.84 0.21 -2.21 16 14 C 0.10 1.92 8.41 83.09 0.70 2.62 16 15 N -0.65 -18.75 3.57 -834.17 -2.98 -21.72 16 16 C 0.56 22.17 8.02 87.65 0.70 22.87 16 17 O -0.56 -26.54 15.20 -3.03 -0.05 -26.58 16 18 C -0.10 -4.20 5.99 71.23 0.43 -3.77 16 19 S -0.19 -10.76 19.60 -56.49 -1.11 -11.87 16 20 C -0.61 -36.09 9.50 67.96 0.65 -35.45 16 21 H 0.07 4.09 7.80 -2.92 -0.02 4.06 16 22 C -0.02 -1.13 5.49 84.86 0.47 -0.67 16 23 N -0.91 -58.56 13.67 21.65 0.30 -58.26 16 24 Si 1.14 50.14 29.92 68.60 2.05 52.19 16 25 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.03 0.74 6.35 -2.39 -0.02 0.72 16 33 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 34 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.09 0.53 8.10 -2.39 -0.02 0.51 16 36 H 0.06 0.65 8.08 -2.39 -0.02 0.63 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.10 0.82 6.81 -2.39 -0.02 0.80 16 39 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 40 H 0.08 2.36 6.89 -2.39 -0.02 2.34 16 41 H 0.06 1.91 7.28 -2.39 -0.02 1.89 16 42 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 2.00 7.68 -2.39 -0.02 1.98 16 44 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 46 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 47 H 0.11 4.17 8.14 -2.40 -0.02 4.15 16 48 H 0.26 17.43 7.12 -92.71 -0.66 16.77 16 Total: -1.00 -83.70 409.76 4.03 -79.67 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 1.04 Total: 19.71 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 7.29 Total: -1.55 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -5.13 Total: -94.65 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.11 Total: -43.50 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.05 Total: 52.19 kcal Atomic # 16 Polarization: -10.76 SS G_CDS: -1.11 Total: -11.87 kcal Total: -83.70 4.03 -79.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684061691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.437 kcal (2) G-P(sol) polarization free energy of solvation -83.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds